BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13420.1 Length=1213 Score E Sequences producing significant alignments: (Bits) Value Ahg471497 jgi|Araly1|471497|fgenesh2_kg.1__1451__AT1G13420.1 1417 0.0 Ahg471498 jgi|Araly1|471498|fgenesh2_kg.1__1452__AT1G13430.1 641 0.0 > Ahg471497 jgi|Araly1|471497|fgenesh2_kg.1__1451__AT1G13420.1 Length=1021 Score = 1417 bits (767), Expect = 0.0 Identities = 871/922 (94%), Gaps = 4/922 (0%) Strand=Plus/Plus Query 107 aaagTTTGATCTCTTCACTTCCTTCAGACATAGATTGCTCAGGGACCAAGTTGTACAAGT 166 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 56 AAAGTTTGATCTCTTCACTTCCTTCAGACATAGATTGCTCTGGGACCAAGTTGTTCAAGT 115 Query 167 ACCAAGGATGTTGGTACGACAAAGATATTCTCCAAGCAATCCTCAATTTCAACAAAAACT 226 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 116 ACCAAGGATGTTGGTACGACAAAGACATTCTCCAAGCAATCCTCAATTTCAACAAAAACT 175 Query 227 TTCAGCCACAAGAAACGGATATAATTGTTGCTTCTTTCCCCAAATCGGGTACGACTTGGC 286 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 176 TTCAGCCACAAGAAACCGATATAATAGTTGCTTCTTTCCCCAAATCGGGTACGACTTGGC 235 Query 287 TCAAGGCACTCACATTCGCACTCGCGCAAAGATCAAAACACACTTCAGACAATCATCCTC 346 ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| Sbjct 236 TCAAGGCACTCACATTCGCACTCGCTCAAAGATCAAAACACCCTTCAGACCATCATCCTC 295 Query 347 TGCTAACTCATAATCCTCATGAGCTAGTGCCGTACCTCGAGCTCGATCTTTATCTCAAAA 406 |||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 296 TGCTAAGTCACAATCCTCATGAGCTAGTGCCGTACCTCGAGCTAGATCTGTATCTCAAAA 355 Query 407 GCTCGAAACCGGATTTGACCAAGTTGCCATCATCATCTCCGAGATTGTTCTCAACCCACA 466 ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| Sbjct 356 GCTCGAAACCGGATTTGACCAAGTTACCATCATCATATCCGAGATTGTTCTCAACTCACA 415 Query 467 TGTCCTTTGATGCGCTTAAAGTACCGTTGAAAGAGTCTCCTTGCAAGATCGTGTACGTGT 526 |||| || ||||||||| ||||||| ||||| ||||||||||||||||| |||||||||| Sbjct 416 TGTCGTTCGATGCGCTTCAAGTACCCTTGAAGGAGTCTCCTTGCAAGATTGTGTACGTGT 475 Query 527 GCAGGAACGTGAAAGACGTATTGGTATCACTTTGGTGTTTCGAAAACTCCATGAGTGGAG 586 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 476 GCAGGAACGTGAAAGACGTGTTGGTATCACTTTGGTGTTTCGAAAACTCCATGAGTGGAG 535 Query 587 AAAACAATTTAAGTCTCGAGGCTTTGTTCGAGTCTTTATGTAGCGGAGTTAACTTATGCG 646 ||| |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 536 AAAGCAATGTAAGTCTCGAGGCTTTGTTCGAGTCTTTCTGTAGCGGAGTTAGCTTATGCG 595 Query 647 GTCCCTTATGGGAAAATGTGTTAGGCTATTGGAGAGGAAGCTTGGAAGATCCTAAGCATG 706 ||||||||||||||||||| ||| ||||||||||||||||||| || ||||||| ||| | Sbjct 596 GTCCCTTATGGGAAAATGTCTTAAGCTATTGGAGAGGAAGCTTAGATGATCCTAGGCAGG 655 Query 707 TGCTTTTCTTGAGGTACGAGGAGTTGAAGACGGAGCCTCGTGTGCAAATCAAGAGACTTG 766 | |||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct 656 TTCTTTTCTTGAGGTACGAGGAGTTGAAAACGGAGCCTCGTGAGCAAATCAAGAAACTTG 715 Query 767 CAGAGTTCTTAGATTGTCCATTCACAAAGGAAGAAGAAGATAGTGGAGGTGTAGACAAGA 826 | ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 716 CTCAGTTCTTGGATTGTCCATTCACAAAGGAAGAAGAAGACAACGGAGGTGTAGACAAGA 775 Query 827 TCTTGGAACTTTGTTCTCTAAGAAACCTTAGCGGTTTGGAGATCAACAAAACAGGAAG-C 885 ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| | Sbjct 776 TCTTGGAACTTTGCTCTCTAAGAAACCTGAGCGGTTTGGAGATCAACAAAACAGGAAAAC 835 Query 886 TTGTCGGAAGGAGTAAGTTTCAAGAGTTTTTTCCGTAAAGGGGAAGTTGGTGATTGGAAG 945 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 836 T-GTCGGAAGGAGTAAGTTTCAAGAGTTTTTTCCGTAAAGGGGAAGTCGGTGATTGGAAG 894 Query 946 AGTTATATGACTCCTGAAATGGA-AAACAAAATCGACATGATTGTTGAGGAGAAACTTCA 1004 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 895 AGTTATATGACTCCTGAAATGGAGAAA-AAAATCGACATGATTGTTGAGGAGAAACTTCA 953 Query 1005 AGGCTCTGGTTTGAAATTGTAG 1026 ||| |||||||||||||||||| Sbjct 954 AGGTTCTGGTTTGAAATTGTAG 975 > Ahg471498 jgi|Araly1|471498|fgenesh2_kg.1__1452__AT1G13430.1 Length=1119 Score = 641 bits (347), Expect = 0.0 Identities = 494/563 (88%), Gaps = 18/563 (3%) Strand=Plus/Plus Query 13 ACaaaagcaaaaacaaaaaTGGGTGAGAAAGATATTCCAAGGAACTTgaaggaagaagaa 72 |||| ||| ||| |||||||| ||| |||||||||||||||||||||| |||||||||| Sbjct 7 ACAACAGC-CAAA-AAAAATGGATGAAAAAGATATTCCAAGGAACTTGAGGGAAGAAGAA 64 Query 73 gaagaagaagaagaaaaccaaagtgaagaaaccaaaagTTTGATCTCTTCACTTCCTTCA 132 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 65 GAAGAAGAAGAAGAAAACCTAAGTGAAGAAACCAAAAGTTTGATCTCTTCACTTCCTTGG 124 Query 133 GACATAGATT-GCTCAGGGACCAAGTTGTACAAGTACCAAGGATGTTGGTACGACAAAGA 191 || ||||||| || |||| |||| ||| |||||||||||||| ||||||| || |||| Sbjct 125 GAGATAGATTACCT-TGGGAACAAGCTGTTCAAGTACCAAGGATATTGGTACTACGAAGA 183 Query 192 TATTCTCCAAGCAATCCTCAATTTCAACAAAAACTTTCAGCCACAAGAAACGGATATAAT 251 |||||||||||||||| ||||||| |||| | ||||| ||||||||||| |||||||| Sbjct 184 CATTCTCCAAGCAATCCCCAATTTCCACAAGAGTTTTCAACCACAAGAAACCGATATAAT 243 Query 252 TGTTGCTTCTTTCCCCAAATCGGGTACGACTTGGCTCAAGGCACTCACATTCGCACTCGC 311 ||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 244 TGTTGCTGCTTTCCCCAAATCGGGCACGACTTGGCTCAAGGCACTCACATTTGCACTCAT 303 Query 312 GCAAAGATCAAAACA-CACTT-----CAGACAATCATCCTCTGCTAACTCATAATCCTCA 365 ||| |||||||||| | ||| ||| ||||||||||||||| ||||||||||||| Sbjct 304 TCAACGATCAAAACATCCCTTAGAAGAAGATAATCATCCTCTGCTATCTCATAATCCTCA 363 Query 366 TGAGCTAGTGCCGTACCTCGAGCTCGATCTTTATCTCAAAAGCTCGAAACCGGATTTGAC 425 |||| ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct 364 TGAGATAGTGCCGTACCTCGAGCTCGATCTGTATCTCAAAAGCTCAAAACCGGACTTGAC 423 Query 426 CAAG---TT-GC--CATCATCATCTCCGAGATTGTTCTCAACCCACATGTCCTTTGATGC 479 |||| || | |||||| ||||||||||||||||||||| |||||||| || ||||| Sbjct 424 CAAGTTCTTATCATCATCATTATCTCCGAGATTGTTCTCAACTCACATGTCGTTGGATGC 483 Query 480 GCTTAAAGTACCGTTGAAAGAGTC-TCCTTGCAAGATCGTGTACGTGTGCAGGAACGTGA 538 |||||||| ||| ||||| ||||| | ||||||||||||||||||||||||||||||||| Sbjct 484 GCTTAAAGCACCCTTGAAGGAGTCAT-CTTGCAAGATCGTGTACGTGTGCAGGAACGTGA 542 Query 539 AAGACGTATTGGTATCACTTTGG 561 ||||||| ||||| || |||||| Sbjct 543 AAGACGTGTTGGTGTCTCTTTGG 565 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45290025396 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5