BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13420.1
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471497 jgi|Araly1|471497|fgenesh2_kg.1__1451__AT1G13420.1 1417 0.0
Ahg471498 jgi|Araly1|471498|fgenesh2_kg.1__1452__AT1G13430.1 641 0.0
> Ahg471497 jgi|Araly1|471497|fgenesh2_kg.1__1451__AT1G13420.1
Length=1021
Score = 1417 bits (767), Expect = 0.0
Identities = 871/922 (94%), Gaps = 4/922 (0%)
Strand=Plus/Plus
Query 107 aaagTTTGATCTCTTCACTTCCTTCAGACATAGATTGCTCAGGGACCAAGTTGTACAAGT 166
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 56 AAAGTTTGATCTCTTCACTTCCTTCAGACATAGATTGCTCTGGGACCAAGTTGTTCAAGT 115
Query 167 ACCAAGGATGTTGGTACGACAAAGATATTCTCCAAGCAATCCTCAATTTCAACAAAAACT 226
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 116 ACCAAGGATGTTGGTACGACAAAGACATTCTCCAAGCAATCCTCAATTTCAACAAAAACT 175
Query 227 TTCAGCCACAAGAAACGGATATAATTGTTGCTTCTTTCCCCAAATCGGGTACGACTTGGC 286
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 176 TTCAGCCACAAGAAACCGATATAATAGTTGCTTCTTTCCCCAAATCGGGTACGACTTGGC 235
Query 287 TCAAGGCACTCACATTCGCACTCGCGCAAAGATCAAAACACACTTCAGACAATCATCCTC 346
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 236 TCAAGGCACTCACATTCGCACTCGCTCAAAGATCAAAACACCCTTCAGACCATCATCCTC 295
Query 347 TGCTAACTCATAATCCTCATGAGCTAGTGCCGTACCTCGAGCTCGATCTTTATCTCAAAA 406
|||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 296 TGCTAAGTCACAATCCTCATGAGCTAGTGCCGTACCTCGAGCTAGATCTGTATCTCAAAA 355
Query 407 GCTCGAAACCGGATTTGACCAAGTTGCCATCATCATCTCCGAGATTGTTCTCAACCCACA 466
||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct 356 GCTCGAAACCGGATTTGACCAAGTTACCATCATCATATCCGAGATTGTTCTCAACTCACA 415
Query 467 TGTCCTTTGATGCGCTTAAAGTACCGTTGAAAGAGTCTCCTTGCAAGATCGTGTACGTGT 526
|||| || ||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 416 TGTCGTTCGATGCGCTTCAAGTACCCTTGAAGGAGTCTCCTTGCAAGATTGTGTACGTGT 475
Query 527 GCAGGAACGTGAAAGACGTATTGGTATCACTTTGGTGTTTCGAAAACTCCATGAGTGGAG 586
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GCAGGAACGTGAAAGACGTGTTGGTATCACTTTGGTGTTTCGAAAACTCCATGAGTGGAG 535
Query 587 AAAACAATTTAAGTCTCGAGGCTTTGTTCGAGTCTTTATGTAGCGGAGTTAACTTATGCG 646
||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 536 AAAGCAATGTAAGTCTCGAGGCTTTGTTCGAGTCTTTCTGTAGCGGAGTTAGCTTATGCG 595
Query 647 GTCCCTTATGGGAAAATGTGTTAGGCTATTGGAGAGGAAGCTTGGAAGATCCTAAGCATG 706
||||||||||||||||||| ||| ||||||||||||||||||| || ||||||| ||| |
Sbjct 596 GTCCCTTATGGGAAAATGTCTTAAGCTATTGGAGAGGAAGCTTAGATGATCCTAGGCAGG 655
Query 707 TGCTTTTCTTGAGGTACGAGGAGTTGAAGACGGAGCCTCGTGTGCAAATCAAGAGACTTG 766
| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 656 TTCTTTTCTTGAGGTACGAGGAGTTGAAAACGGAGCCTCGTGAGCAAATCAAGAAACTTG 715
Query 767 CAGAGTTCTTAGATTGTCCATTCACAAAGGAAGAAGAAGATAGTGGAGGTGTAGACAAGA 826
| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 716 CTCAGTTCTTGGATTGTCCATTCACAAAGGAAGAAGAAGACAACGGAGGTGTAGACAAGA 775
Query 827 TCTTGGAACTTTGTTCTCTAAGAAACCTTAGCGGTTTGGAGATCAACAAAACAGGAAG-C 885
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 776 TCTTGGAACTTTGCTCTCTAAGAAACCTGAGCGGTTTGGAGATCAACAAAACAGGAAAAC 835
Query 886 TTGTCGGAAGGAGTAAGTTTCAAGAGTTTTTTCCGTAAAGGGGAAGTTGGTGATTGGAAG 945
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 T-GTCGGAAGGAGTAAGTTTCAAGAGTTTTTTCCGTAAAGGGGAAGTCGGTGATTGGAAG 894
Query 946 AGTTATATGACTCCTGAAATGGA-AAACAAAATCGACATGATTGTTGAGGAGAAACTTCA 1004
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 895 AGTTATATGACTCCTGAAATGGAGAAA-AAAATCGACATGATTGTTGAGGAGAAACTTCA 953
Query 1005 AGGCTCTGGTTTGAAATTGTAG 1026
||| ||||||||||||||||||
Sbjct 954 AGGTTCTGGTTTGAAATTGTAG 975
> Ahg471498 jgi|Araly1|471498|fgenesh2_kg.1__1452__AT1G13430.1
Length=1119
Score = 641 bits (347), Expect = 0.0
Identities = 494/563 (88%), Gaps = 18/563 (3%)
Strand=Plus/Plus
Query 13 ACaaaagcaaaaacaaaaaTGGGTGAGAAAGATATTCCAAGGAACTTgaaggaagaagaa 72
|||| ||| ||| |||||||| ||| |||||||||||||||||||||| ||||||||||
Sbjct 7 ACAACAGC-CAAA-AAAAATGGATGAAAAAGATATTCCAAGGAACTTGAGGGAAGAAGAA 64
Query 73 gaagaagaagaagaaaaccaaagtgaagaaaccaaaagTTTGATCTCTTCACTTCCTTCA 132
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 65 GAAGAAGAAGAAGAAAACCTAAGTGAAGAAACCAAAAGTTTGATCTCTTCACTTCCTTGG 124
Query 133 GACATAGATT-GCTCAGGGACCAAGTTGTACAAGTACCAAGGATGTTGGTACGACAAAGA 191
|| ||||||| || |||| |||| ||| |||||||||||||| ||||||| || ||||
Sbjct 125 GAGATAGATTACCT-TGGGAACAAGCTGTTCAAGTACCAAGGATATTGGTACTACGAAGA 183
Query 192 TATTCTCCAAGCAATCCTCAATTTCAACAAAAACTTTCAGCCACAAGAAACGGATATAAT 251
|||||||||||||||| ||||||| |||| | ||||| ||||||||||| ||||||||
Sbjct 184 CATTCTCCAAGCAATCCCCAATTTCCACAAGAGTTTTCAACCACAAGAAACCGATATAAT 243
Query 252 TGTTGCTTCTTTCCCCAAATCGGGTACGACTTGGCTCAAGGCACTCACATTCGCACTCGC 311
||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 244 TGTTGCTGCTTTCCCCAAATCGGGCACGACTTGGCTCAAGGCACTCACATTTGCACTCAT 303
Query 312 GCAAAGATCAAAACA-CACTT-----CAGACAATCATCCTCTGCTAACTCATAATCCTCA 365
||| |||||||||| | ||| ||| ||||||||||||||| |||||||||||||
Sbjct 304 TCAACGATCAAAACATCCCTTAGAAGAAGATAATCATCCTCTGCTATCTCATAATCCTCA 363
Query 366 TGAGCTAGTGCCGTACCTCGAGCTCGATCTTTATCTCAAAAGCTCGAAACCGGATTTGAC 425
|||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 364 TGAGATAGTGCCGTACCTCGAGCTCGATCTGTATCTCAAAAGCTCAAAACCGGACTTGAC 423
Query 426 CAAG---TT-GC--CATCATCATCTCCGAGATTGTTCTCAACCCACATGTCCTTTGATGC 479
|||| || | |||||| ||||||||||||||||||||| |||||||| || |||||
Sbjct 424 CAAGTTCTTATCATCATCATTATCTCCGAGATTGTTCTCAACTCACATGTCGTTGGATGC 483
Query 480 GCTTAAAGTACCGTTGAAAGAGTC-TCCTTGCAAGATCGTGTACGTGTGCAGGAACGTGA 538
|||||||| ||| ||||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 484 GCTTAAAGCACCCTTGAAGGAGTCAT-CTTGCAAGATCGTGTACGTGTGCAGGAACGTGA 542
Query 539 AAGACGTATTGGTATCACTTTGG 561
||||||| ||||| || ||||||
Sbjct 543 AAGACGTGTTGGTGTCTCTTTGG 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45290025396
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5