BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13430.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471498 jgi|Araly1|471498|fgenesh2_kg.1__1452__AT1G13430.1 1500 0.0
Ahg471497 jgi|Araly1|471497|fgenesh2_kg.1__1451__AT1G13420.1 455 4e-127
> Ahg471498 jgi|Araly1|471498|fgenesh2_kg.1__1452__AT1G13430.1
Length=1119
Score = 1500 bits (812), Expect = 0.0
Identities = 1009/1102 (92%), Gaps = 21/1102 (2%)
Strand=Plus/Plus
Query 9 AACAAAACAAGAACCaaaaaaaaTGGATGAGAAAGATATTCTAAGGAACTTGAGGgaaga 68
|||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1 AACAAAACAACAGCCAAAAAAAATGGATGAAAAAGATATTCCAAGGAACTTGAGGGAAGA 60
Query 69 agaagaagaagaagaagaaAATCAAAGCGAAGAAACCAAAATTTTGATCTCTTCACTTCC 128
||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||
Sbjct 61 AGAAGAAGAAGAAGAAGAAAACCTAAGTGAAGAAACCAAAAGTTTGATCTCTTCACTTCC 120
Query 129 TTGGGAGATAGATTACCTTGGGAACAAGCTTTTCAAGTACCAAGGATATTGGTACTACGA 188
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TTGGGAGATAGATTACCTTGGGAACAAGCTGTTCAAGTACCAAGGATATTGGTACTACGA 180
Query 189 AGACGTTCTCCAATCAATCCCCAATATACACTCGAGTTTTCAGCCACAAGAAACCGATAT 248
|||| |||||||| ||||||||||| | ||| ||||||||| |||||||||||||||||
Sbjct 181 AGACATTCTCCAAGCAATCCCCAATTTCCACAAGAGTTTTCAACCACAAGAAACCGATAT 240
Query 249 AGTTGTTGCTTCTTTCTACAAATCGGGCACGACTTGGCTCAAAGCACTCACATTTGCACT 308
| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 AATTGTTGCTGCTTTCCCCAAATCGGGCACGACTTGGCTCAAGGCACTCACATTTGCACT 300
Query 309 CGTTCAACGATCAAAACACT-CGTTAGAAGATCATCATCATCCTCTGCTATCTCATAACC 367
| |||||||||||||||| | | |||||||| || |||||||||||||||||||||| |
Sbjct 301 CATTCAACGATCAAAACA-TCCCTTAGAAGAAGATAATCATCCTCTGCTATCTCATAATC 359
Query 368 CTCATGAGATAGTACCGTACCTCGAGCTAGATCTGTATCTCAACAGCTCAAAACCGGACT 427
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 360 CTCATGAGATAGTGCCGTACCTCGAGCTCGATCTGTATCTCAAAAGCTCAAAACCGGACT 419
Query 428 TGACCAAGTTCTTatcatcatcatcatcatcatcatcTCCGAGATTGTTCTCAACTCATA 487
||||||||||| | | ||||||||||| | |||||||||||||||||||||||| |
Sbjct 420 TGACCAAGTTC---T--T-ATCATCATCAT--T-ATCTCCGAGATTGTTCTCAACTCACA 470
Query 488 TGTCCTTGGACGCGCTTAAA-CTACCCTTGAAGAAGTC-TCCTTGCAAGGTAGTGTACGT 545
|||| ||||| ||||||||| | |||||||||| |||| | |||||||| | ||||||||
Sbjct 471 TGTCGTTGGATGCGCTTAAAGC-ACCCTTGAAGGAGTCAT-CTTGCAAGATCGTGTACGT 528
Query 546 GTGCAGGAACGTGAAAGACGTGTTGGTGTCACTTTGGTGTTTCCTCAATGCCAACAAGGG 605
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 529 GTGCAGGAACGTGAAAGACGTGTTGGTGTCTCTTTGGCATTTCCTCAATGCCAACAAGGG 588
Query 606 AGTAGAATGGGGAGATTTTAGCCAAAATGAAAAGATCATTCGAGCGGA-GAATTATTCTT 664
|||||||||||||||||| ||||||| |||||||||| | ||| ||| | || | ||||
Sbjct 589 AGTAGAATGGGGAGATTTCAGCCAAAGCGAAAAGATCAGTGGAGTGGATG-ATCACTCTT 647
Query 665 TCAAGGCTATATTTGAGTCATTCTGCAACGGAGTTACCCTACACGGTCCCTTTTG-GGAC 723
|| ||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||||
Sbjct 648 TCGAGGCTATGTTTGAGTCATTCTGCAACGGAGTTACCTTATACGGTCCC-TTTGAGGAC 706
Query 724 CATGCACAGAGCTATTGGCGAGGCAGCTTGGAAGATCCTAAGCATTTTCTTTTCATGAGG 783
||||| ||||||||||| |||||||||||||||||| |||||| |||||||||||| |
Sbjct 707 CATGCTTTGAGCTATTGGCAAGGCAGCTTGGAAGATCCAAAGCATGTTCTTTTCATGATG 766
Query 784 TACGAGGAGTTGAAAGCGGAGCCTCGTACTCAGGTCAAGAGACTTGCAGAGTTCTTGGAT 843
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 767 TACGAGGAGTTCAAAGCGGAGCCTCGTACTCAGGTTAAGAGACTTGCGGAGTTCTTGGAT 826
Query 844 TGTCCATTCACTAAGGAAGAGGAAGATAGCGGAACTGTAGACAAGATCTTGGAACTTTGC 903
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 827 TGTCCATTCACTAAGGAAGAGGAAGATAGCGGATCTGTAGATAAGATCTTGGAACTTTGC 886
Query 904 TCTCTAAGTAATTTAAGCAGTTTGGAGATCAACAAAACTGGATCCTTGGGTGGAGTAGAT 963
|||||||||||| ||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct 887 TCTCTAAGTAATCTAAGCAGTTTGGAGATCAACAAAACTGGAACGTTAGATGGAGTAGAT 946
Query 964 TACAAGACTTATTTCCGTAAAGGACAAGTTGGTGACTGGAAGAGTTATATGACCTCTGAA 1023
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 947 TTCAAGACTTATTTCCGTAAAGGACAAGTTGGTGACTGGAAGAGTTATATGACCCCTGAA 1006
Query 1024 ATGGTAAATAAAATCGATATGATCGTCGAGGAGAAACTCAAAGGTTCCGGTTTGAAATTC 1083
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1007 ATGGTAAACAAAATCGATATGATCATCGAGGAGAAACTCAAAGGTTCCGGTTTGAAATTC 1066
Query 1084 TAGAATTATGCGTGTGCTTTGT 1105
|||||||||| ||||||||||
Sbjct 1067 TAGAATTATG--TGTGCTTTGT 1086
> Ahg471497 jgi|Araly1|471497|fgenesh2_kg.1__1451__AT1G13420.1
Length=1021
Score = 455 bits (246), Expect = 4e-127
Identities = 410/485 (85%), Gaps = 27/485 (6%)
Strand=Plus/Plus
Query 107 AAATTTTGATCTCTTCACTTCCTTGGGAGATAGATTACCT-TGGGAACAAGCTT-TTCAA 164
||| |||||||||||||||||||| || ||||||| || ||||| |||| || |||||
Sbjct 56 AAAGTTTGATCTCTTCACTTCCTTCAGACATAGATT-GCTCTGGGACCAAG-TTGTTCAA 113
Query 165 GTACCAAGGATATTGGTACTACGAAGACGTTCTCCAATCAATCCCCAATATAC-ACTCGA 223
||||||||||| ||||||| || ||||| |||||||| |||||| |||| | | || |
Sbjct 114 GTACCAAGGATGTTGGTACGACAAAGACATTCTCCAAGCAATCCTCAAT-TTCAACAAAA 172
Query 224 GTTTTCAGCCACAAGAAACCGATATAGTTGTTGCTTCTTTCTACAAATCGGGCACGACTT 283
|||||||||||||||||||||||| | |||||||||||| ||||||||| |||||||
Sbjct 173 ACTTTCAGCCACAAGAAACCGATATAATAGTTGCTTCTTTCCCCAAATCGGGTACGACTT 232
Query 284 GGCTCAAAGCACTCACATTTGCACTCGTTCAACGATCAAAACACTCGTTAGAAGATCATC 343
||||||| ||||||||||| ||||||| |||| ||||||||||| | || | || | |
Sbjct 233 GGCTCAAGGCACTCACATTCGCACTCGCTCAAAGATCAAAACACCC-TTC-A-GA-C--C 286
Query 344 ATCATCCTCTGCTATCTCATAACCCTCATGAGATAGTACCGTACCTCGAGCTAGATCTGT 403
|||||||||||||| ||| || ||||||||| |||| ||||||||||||||||||||||
Sbjct 287 ATCATCCTCTGCTAAGTCACAATCCTCATGAGCTAGTGCCGTACCTCGAGCTAGATCTGT 346
Query 404 ATCTCAACAGCTCAAAACCGGACTTGACCAAGTTCTTatcatcatcatcatcatcatcat 463
||||||| ||||| |||||||| ||||||||||| | | ||||||||| ||| |
Sbjct 347 ATCTCAAAAGCTCGAAACCGGATTTGACCAAGTT---A-C--CATCATCAT-ATC--C-- 395
Query 464 cTCCGAGATTGTTCTCAACTCATATGTCCTTGGACGCGCTTAAACTACCCTTGAAGAAGT 523
|||||||||||||||||| ||||| || || |||||| || ||||||||||| |||
Sbjct 396 ----GAGATTGTTCTCAACTCACATGTCGTTCGATGCGCTTCAAGTACCCTTGAAGGAGT 451
Query 524 CTCCTTGCAAGGTAGTGTACGTGTGCAGGAACGTGAAAGACGTGTTGGTGTCACTTTGGT 583
||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 452 CTCCTTGCAAGATTGTGTACGTGTGCAGGAACGTGAAAGACGTGTTGGTATCACTTTGGT 511
Query 584 GTTTC 588
|||||
Sbjct 512 GTTTC 516
Score = 366 bits (198), Expect = 2e-100
Identities = 354/428 (83%), Gaps = 15/428 (4%)
Strand=Plus/Plus
Query 668 AGGCTATATTTGAGTCATTCTGCAACGGAGTTACCCTACACGGTCCCTTTTGGGACCATG 727
||||| | || ||||| ||||| | |||||||| | || ||||||||| ||||| |||
Sbjct 554 AGGCTTTGTTCGAGTCTTTCTGTAGCGGAGTTAGCTTATGCGGTCCCTTATGGGAAAATG 613
Query 728 -CACAGAGCTATTGGCGAGGCAGCTTGGAAGATCCTAAGCATTTTCTTTTCATGAGGTAC 786
| | ||||||||| |||| ||||| || ||||||| ||| |||||||| ||||||||
Sbjct 614 TCTTA-AGCTATTGGAGAGGAAGCTTAGATGATCCTAGGCAGGTTCTTTTCTTGAGGTAC 672
Query 787 GAGGAGTTGAAAGCGGAGCCTCGT-ACTCAGGTCAAGAGACTTGCAGAGTTCTTGGATTG 845
|||||||||||| ||||||||||| | || |||||| |||||| |||||||||||||
Sbjct 673 GAGGAGTTGAAAACGGAGCCTCGTGA-GCAAATCAAGAAACTTGCTCAGTTCTTGGATTG 731
Query 846 TCCATTCACTAAGGAAGAGGAAGATAGCGGAACTGTAGACAAGATCTTGGAACTTTGCTC 905
||||||||| |||||||| ||||| | |||| |||||||||||||||||||||||||||
Sbjct 732 TCCATTCACAAAGGAAGAAGAAGACAACGGAGGTGTAGACAAGATCTTGGAACTTTGCTC 791
Query 906 TCTAAGTAATTTAAGCAGTTTGGAGATCAACAAAACTGGATC-CT-TGGGT-GGAGTA-G 961
|||||| || | ||| ||||||||||||||||||| ||| || | || |||||| |
Sbjct 792 TCTAAGAAACCTGAGCGGTTTGGAGATCAACAAAACAGGAAAACTGTCGGAAGGAGTAAG 851
Query 962 ATTACAAGACTTATTTCCGTAAAGGACAAGTTGGTGACTGGAAGAGTTATATGACCTC-T 1020
|| ||||| || |||||||||||| |||| ||||| ||||||||||||||||| || |
Sbjct 852 TTT-CAAGAGTTTTTTCCGTAAAGGGGAAGTCGGTGATTGGAAGAGTTATATGAC-TCCT 909
Query 1021 GAAATGGT-AAATAAAATCGATATGATCGTCGAGGAGAAACT-CAAAGGTTCCGGTTTGA 1078
||||||| ||| |||||||| ||||| || ||||||||||| ||| ||||| |||||||
Sbjct 910 GAAATGGAGAAA-AAAATCGACATGATTGTTGAGGAGAAACTTCAA-GGTTCTGGTTTGA 967
Query 1079 AATTCTAG 1086
|||| |||
Sbjct 968 AATTGTAG 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5