BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13440.1
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471499 jgi|Araly1|471499|fgenesh2_kg.1__1453__AT1G13440.1 1914 0.0
Ahg477673 jgi|Araly1|477673|fgenesh2_kg.3__374__AT3G04120.1 1365 0.0
> Ahg471499 jgi|Araly1|471499|fgenesh2_kg.1__1453__AT1G13440.1
Length=1361
Score = 1914 bits (1036), Expect = 0.0
Identities = 1152/1206 (96%), Gaps = 16/1206 (1%)
Strand=Plus/Plus
Query 23 TTTCATCATCACGTTCTTCTTCTCTTTTAAATAACCCTAAATCCTCACCAAACCCAAACC 82
||||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct 1 TTTCATCATCACGTTCTTCTTCTCTTTTAAATAACCCTAAAGCCT---C--A-CCAAACC 54
Query 83 CTCACTCACTATTTTCACATtctcttctctctcgatatcatctaaatctctctcgatctc 142
||||||||||| ||||||| | |||||||||||||||||||| ||| ||||||||||||
Sbjct 55 CTCACTCACTAATTTCACA-T-TCTTCTCTCTCGATATCATCGAAA--TCTCTCGATCTC 110
Query 143 -AATTTCGCAAAATGGCTGACAAGAAGATCAGAATCGGAATCAACGGTTTCGGAAGAATC 201
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 AAATTTCG-AAAATGGCTGACAAGAAGATCAGAATCGGAATCAACGGTTTCGGAAGAATC 169
Query 202 GGTCGTTTGGTTGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTTAAC 261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 170 GGTCGTTTGGTTGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTCAAC 229
Query 262 GATCCTTTCATCACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGT 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GATCCTTTCATCACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGT 289
Query 322 CAGTGGAAGCACCATGAGCTTAAGGTGAAGGATGACAAAACTCTTCTCTTCGGTGAGAAG 381
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 290 CAGTGGAAGCACCATGAACTTAAGGTCAAGGATGATAAAACTCTTCTCTTCGGTGAGAAG 349
Query 382 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGACATCCCATGGGGTGAGGCTGGAGCT 441
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 350 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGAGATCCCATGGGGTGAGGCTGGAGCT 409
Query 442 GACTTTGTTGTTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCTGCTCACTTG 501
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 410 GACTTTGTTGTTGAGTCTACTGGTGTCTTCACTGACAAGGACAAGGCAGCTGCTCACTTG 469
Query 502 AAGGGTGGTGCTAAAAAGGTTGTCATCTCTGCCCCAAGCAAAGATGCGCCCATGTTCGTT 561
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 470 AAGGGTGGTGCTAAAAAGGTTGTCATCTCTGCGCCAAGCAAAGATGCTCCCATGTTTGTC 529
Query 562 GTTGGTGTCAACGAGCACGAGTACAAGTCTGACCTTGACATTGTTTCCAACGCTAGTTGC 621
||||||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 530 GTTGGTGTCAATGAGCATGAATACAAGTCTGATCTTGACATTGTTTCCAATGCTAGTTGC 589
Query 622 ACCACTAACTGCCTTGCTCCTCTTGCCAAGGTTATTAATGACAGGTTTGGCATTGTTGAG 681
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 590 ACCACTAACTGCCTTGCTCCTCTTGCCAAGGTTATTAACGACAGATTTGGGATTGTTGAG 649
Query 682 GGACTCATGACCACTGTCCACTCTATCACTGCTACTCAGAAGACAGTTGATGGTCCATCA 741
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 650 GGACTCATGACCACTGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCA 709
Query 742 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGT 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGT 769
Query 802 GCCGCCAAGGCTGTTGGGAAAGTGTTGCCATCCCTCAATGGAAAATTGACCGGAATGTCT 861
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 770 GCCGCCAAGGCTGTTGGCAAAGTGTTGCCATCCCTCAATGGAAAATTGACTGGAATGTCT 829
Query 862 TTCCGTGTTCCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCT 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TTCCGTGTTCCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCT 889
Query 922 GCAACATACGACGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAAATGAAGGGA 981
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 890 GCAACATACGATGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAACTGAAGGGA 949
Query 982 ATTTTGGGATACACTGAGGATGATGTTGTGTCTACCGACTTTGTTGGTGACAACAGGTCA 1041
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 950 ATTTTGGGATACACCGAGGATGATGTTGTGTCTACTGACTTTGTCGGTGACAACAGGTCA 1009
Query 1042 AGCATTTTCGATGCCAAGGCTGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCA 1101
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AGCATATTCGATGCTAAGGCAGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCA 1069
Query 1102 TGGTACGACAACGAATGGGGTTACAGTTCTCGTGTCGTTGACCTTATCGTTCACATGTCA 1161
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1070 TGGTACGACAACGAGTGGGGTTACAGTTCTCGTGTCGTCGACCTTATCGTTCACATGTCA 1129
Query 1162 AAGGCCTAAGCTTACACCGGCGAGAGTTTGTGTGTGGTTGAGTTCGTACTGTTCTGAATa 1221
|||||||||| ||||||| || ||||||||||||| | |||| ||||||||||||||||
Sbjct 1130 AAGGCCTAAGTTTACACCAGCAAGAGTTTGTGTGT--T-GAGT-CGTACTGTTCTGAATA 1185
Query 1222 aaaaaa 1227
||||||
Sbjct 1186 AAAAAA 1191
Score = 198 bits (107), Expect = 8e-50
Identities = 156/177 (88%), Gaps = 13/177 (7%)
Strand=Plus/Plus
Query 1259 TTTCACTGATTCCATGCGCAGTCATGAGAGTTTGTAGCTTTTGT--CTTTTTGCTTTCTC 1316
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1192 TTTCACTGATTCCATGCGCAGTCATGAGAGTTTGTAGCTTTTTTTTCTTTTTGCTTTCTA 1251
Query 1317 TTAATGTTTCCCTGCTTT-ATTTACT-GAAACCATTGGTTTGGTTTTTTATGTTAATTAA 1374
|||||||||||||||||| | | | ||||||||||||||||||||| |||||||| |
Sbjct 1252 TTAATGTTTCCCTGCTTTGAA--AGTTGAAACCATTGGTTTGGTTTTT-ATGTTAATGA- 1307
Query 1375 GTTTTTAGTTCATT-ACTTTCTCGTGCTAACTCAAACCCAACTGGCAACTGGAACAT 1430
|||| |||||||| | ||| ||||| ||||||||| |||||||||||||| |||||
Sbjct 1308 GTTT--AGTTCATTGA-TTT-TCGTGGTAACTCAAATCCAACTGGCAACTGCAACAT 1360
> Ahg477673 jgi|Araly1|477673|fgenesh2_kg.3__374__AT3G04120.1
Length=1429
Score = 1365 bits (739), Expect = 0.0
Identities = 933/1027 (91%), Gaps = 12/1027 (1%)
Strand=Plus/Plus
Query 153 AATGGCTGACAAGAAGA-TCAGAATCGGAATCAACGGTTTCGGAAGAATCGGTCGTTTGG 211
||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||
Sbjct 129 AATGGCTGACAAGAAGATTAAG-ATCGGAATCAACGGATTCGGAAGAATCGGTCGTTTGG 187
Query 212 TTGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTTAACGATCCTTTCA 271
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 188 TTGCTAGAGTTGTTCTTCAGAGGGACGATGTTGAGCTCGTCGCTGTTAACGACCCCTTCA 247
Query 272 TCACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGTCAGTGGAAGC 331
||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| |
Sbjct 248 TCACCACTGAGTACATGACCTACATGTTCAAGTATGACAGTGTTCACGGTCAATGGAAAC 307
Query 332 ACCATGAGCTTAAGGTGAAGGATGACAAAACTCTTCTCTTCGGTGAGAAGCCAGTCACTG 391
|| |||| || ||| | |||||||| || || ||||||||||||||||||||||||||||
Sbjct 308 ACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAGCCAGTCACTG 367
Query 392 TTTTCGGCATCAGGAACCCTGAGGACATCCCATGGGGTGAGGCTGGAGCTGACTTTGTTG 451
||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||
Sbjct 368 TTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCTGACTATGTTG 427
Query 452 TTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCTGCTCACTTGAAGGGTGGTG 511
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 428 TTGAGTCTACCGGTGTCTTCACTGACAAAGACAAGGCTGCCGCTCACTTGAAGGGTGGGG 487
Query 512 CTAAAAAGGTTGTCATCTCTGCCCCAAGCAAAGATGCGCCCATGTTCGTTGTTGGTGTCA 571
| || |||||||||||||||||||| |||||||| || |||||||| |||||||||||||
Sbjct 488 CCAAGAAGGTTGTCATCTCTGCCCCCAGCAAAGACGCTCCCATGTTTGTTGTTGGTGTCA 547
Query 572 ACGAGCACGAGTACAAGTCTGACCTTGACATTGTTTCCAACGCTAGTTGCACCACTAACT 631
|||||||||| |||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct 548 ACGAGCACGAATACAAGTCCGACCTTGACATCGTCTCCAACGCTAGCTGCACCACTAACT 607
Query 632 GCCTTGCTCCTCTTGCCAAGGTTATTAATGACAGGTTTGGCATTGTTGAGGGACTCATGA 691
|||||||||| |||||||||||||| |||||||||||||| |||||||| || || ||||
Sbjct 608 GCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGGTTTGGAATTGTTGAAGGTCTTATGA 667
Query 692 CCACTGTCCACTCTATCACTGCTACTCAGAAGACAGTTGATGGTCCATCAATGAAGGACT 751
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 668 CAACAGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCAATGAAGGACT 727
Query 752 GGAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGTGCCGCCAAGG 811
|||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct 728 GGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGAGCTGCCAAGG 787
Query 812 CTGTTGGGAAAG-TG-TTGCCATCCCTCAATGGAAAATTGACCGGAATGTCTTTCCGTGT 869
|||| || |||| || || ||| |||| || ||||| |||||||| ||||||||||||||
Sbjct 788 CTGTCGG-AAAGGTGCTT-CCAGCCCTTAACGGAAAGTTGACCGGCATGTCTTTCCGTGT 845
Query 870 TCCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCTGCAACATA 929
|||||||||||||||||||||||||| || || || ||||| ||||||||||| || ||
Sbjct 846 CCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCTGCTACCTA 905
Query 930 CGACGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAAATGAAGGGAATT-TTGG 988
|| |||||||| ||||| |||||||||||||||||||||||| | ||||||||| ||||
Sbjct 906 TGATGAAATCAAAAAGGCTATCAAGGAGGAATCTGAAGGCAAACTCAAGGGAATTCTTGG 965
Query 989 GATACACTGAGGATGATGTTGTGTCTACCGACTTTGTTGGTGACAACAGGTCAAGCAT-T 1047
|||||| |||||||||||||| || || ||||| ||||||||||||||||| ||||| |
Sbjct 966 -ATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGTGACAACAGGTCGAGCATAT 1024
Query 1048 TTCGATGCCAAGGCTGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCATGGTAC 1107
|| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1025 TT-GACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAACTGGTGTCATGGTAC 1083
Query 1108 GACAACGAATGGGGTTACAGTTCTCGTGTCGTTGACCTT-ATCGTTCACATGTCAAAGGC 1166
|||||||||||||||||||||||||| || || ||| || ||||||||||||||||||||
Sbjct 1084 GACAACGAATGGGGTTACAGTTCTCGAGTGGTCGAC-TTGATCGTTCACATGTCAAAGGC 1142
Query 1167 CTAAGCT 1173
|||||||
Sbjct 1143 CTAAGCT 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53821516185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5