BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13450.1
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920224 jgi|Araly1|920224|scaffold_101505.1 1857 0.0
Ahg484361 jgi|Araly1|484361|fgenesh2_kg.5__353__AT3G25990.1 695 0.0
> Ahg920224 jgi|Araly1|920224|scaffold_101505.1
Length=1283
Score = 1857 bits (1005), Expect = 0.0
Identities = 1197/1282 (93%), Gaps = 44/1282 (3%)
Strand=Plus/Plus
Query 83 ACACAGCAATGTTCATTTCCGACAAATCTCGTCC---TACTGATTTCTACAAAGACGATC 139
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 15 ACACTGCAATGTTCATTTCCGACAAATCTCGTCCTAGTACTGATTTCTACAAAGACGATA 74
Query 140 ATCACAATTCCTCCACCACCAGCACCACACGCGATATGATGATCGATGTACTCACCACTA 199
||| ||||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct 75 ATCCCAATTCCTCCACCACCA-CA--ACACGCGATATGATGATCGATG---TCACCACTA 128
Query 200 CCAACGAATCAGTAGatctacaatct---caccaccac---cacaatcaccacaatcatc 253
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 129 CCAACGAATCAGTAGATCTACAATCTCACCACCACCACAATCACAATCACCACAATCGTC 188
Query 254 atctccaccaatctcagccacaacaacaGATTCTCCTCGGAGAAAGCAGTGGAGAAGATC 313
||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 189 ATCTCCACCAACCTCAGCCACAACAACAGATTCTCCTCGGAGAAAGCAGTGGTGAGGATC 248
Query 314 ACGAAGTTAAAGCACCAAAGAAACGAGCGGAGACATGGGTTCAAGACGAAACTCGTAGCT 373
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 249 ACGAAGTTAAAGCACCAAAGAAACGAGCAGAGACATGGGTTCAAGACGAAACTCGTAGCT 308
Query 374 TAATCATGTTCCGTAGAGGTATGGATGGTTTATTCAATACATCCAAATCTAATAAACATC 433
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 309 TAATCATGTTCCGTAGAGGTATGGATGGTTTATTCAACACATCCAAATCTAATAAGCATC 368
Query 434 TCTGGGAACAGATTTCGT-CTAAGATGAGAGAAAAAGGGTTTGATCGATCTCCGACTATG 492
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TCTGGGAACAGATTTC-TGCTAAGATGAGAGAAAAAGGGTTTGATCGATCTCCGACTATG 427
Query 493 TGTACTGATAAATGGAGGAATCTGTTGAAAGAGTTTAAGAAAGCTAAGCATCATGATAGA 552
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 428 TGTACTGATAAGTGGAGGAATCTATTGAAAGAGTTTAAGAAAGCAAAGCATCATGATAGA 487
Query 553 GGAAATGGATCGGCGAAGATGTCGTATTACAAAGAGATTGAAGATATTCTTAGAGAGAGG 612
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 488 GGGAATGGATCAGCGAAGATGTCGTATTACAAGGAGATTGAAGATATTCTTAGAGAGAGG 547
Query 613 AGCAAAAAAGTGACACCACCACAGTATAATAAGAGCCCTAATACACCACCTACATCAGCC 672
| ||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 AACAAGAAAGTG--A-CACCACAGTATAATAAGAGCCCTAATACACCACCTACATCAGCC 604
Query 673 AAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGATGATACGAGCATTTCTTTT 732
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 605 AAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGATGATACAAGCATTTCTTTT 664
Query 733 GGATCCGTTGAAGCTAATGGCAGGCCAGCCTTAAACCTTGAAAGGCGTCTTGATCATGAT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GGATCCGTTGAAGCTAATGGCAGGCCAGCCTTAAACCTTGAAAGGCGTCTTGATCATGAT 724
Query 793 GGTCATCCTCTTGCAATCACTACAGCAGTTGATGCTGTTGCAGCAAATGGAGTTACTCCT 852
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 725 GGTCATCCTCTTGCAATCACTACAG---TTGATGCTGTTGCAGCAAATGGAGTTACCCCT 781
Query 853 TGGAATTGGAGAGAGACTCCTGGAAACGGTGATGATAGTCATGGTCAGCCTTTTGGTGGT 912
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 782 TGGAATTGGAGAGAGACTCCTGGAAACGGTGGTGATAGTCATGGTCAGGCTTTTGGTGGG 841
Query 913 AGGGTCATAACAGTGAAATTTGGTGACTATACAAGAAGAATCGGTGTTGATGGTAGTGCA 972
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 842 AGGGTCATAACTGTGAAATTTGGTGACTATACAAGAAGAATCGGCGTTGATGGTAGTGCA 901
Query 973 GAAGCAATCAAAGAGGTAATCAGATCTGCTTTTGGGTTAAGAACTCGAAGGGCTTTTTGG 1032
|||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 902 GAAGCAATCAAAGAGGCAATCAGATCTGCTTTTGGGTTAAGAACTCGACGAGCTTTTTGG 961
Query 1033 TTAGAAGATGAAGATCAGATTATTCGCTGTCTTGACCGAGACATGCCCTTAGGGAACTAT 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TTAGAAGATGAAGATCAGATTATTCGCTGTCTTGACCGAGACATGCCCTTAGGGAACTAT 1021
Query 1093 CTACTCCGTCT-G-----G-ATG-A-------T---G--G-ACTGGCCATTAGGGTTTGC 1131
||||||| ||| | | ||| | | | | |||||||||||||||||||
Sbjct 1022 CTACTCCATCTCGATAATGTATGCAAAACCCATCTTGCAGGACTGGCCATTAGGGTTTGC 1081
Query 1132 CATTATGATGAATCCAACCAATTACCAGTCCATTCAGAAGAGAAAATCTTCTACACTGAA 1191
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1082 CATTATGATGAATCCAACCAATTACCAGTCCATTCAGAAGAGAAGATCTTCTACACGGAA 1141
Query 1192 GAAGACTACCGCGAGTTTCTGGCTCGACAGGGATGGTCAAGCCTGCAAGTTGATGGTTTT 1251
||||| |||||||| ||||||||||||| ||||||| || || |||||||||||||||||
Sbjct 1142 GAAGATTACCGCGATTTTCTGGCTCGACGGGGATGGACATGCTTGCAAGTTGATGGTTTT 1201
Query 1252 AGGAACATAGAAAACATGGATGATCTTCAACCTGGTGCTGTGTATCGAGGTGTGAGATGA 1311
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1202 AGGAACATAGAAAACATGGATGATCTTCAACCTGGTGCCGTGTACCGAGGTGTGAGATGA 1261
Query 1312 GGAAATGAGATCACAAAACTTC 1333
| |||| |||||||||||||||
Sbjct 1262 GAAAATAAGATCACAAAACTTC 1283
> Ahg484361 jgi|Araly1|484361|fgenesh2_kg.5__353__AT3G25990.1
Length=1332
Score = 695 bits (376), Expect = 0.0
Identities = 880/1108 (79%), Gaps = 96/1108 (9%)
Strand=Plus/Plus
Query 273 acaacaacaGATTC-TCCTCGGAGAAAGCAGTGGA-GA-A-GATCACGAAG-T--T-AAA 324
||| || |||| || |||||||||| ||||||||| || | ||||| | || | | |||
Sbjct 137 ACATCATCAGA-TCATCCTCGGAGATAGCAGTGGAGGAGAGGATCATG-AGATCATCAAA 194
Query 325 GCACCAAAGAAACGAGCGGAGACATGGGTTCAAGACGAAACTCGTA-GCTTAATCAT-GT 382
||||||||||||||||| |||||||||| |||||||| ||||| | |||||||| | ||
Sbjct 195 GCACCAAAGAAACGAGCAGAGACATGGGCACAAGACGAGACTCG-ATGCTTAATC-TCGT 252
Query 383 TCCGTAGAGGTATGGATGGT-TTATTCAATACATCCAAATCTAATAAACATCTCTGGGAA 441
| || |||| ||||| | || ||||| ||||| |||||||| |||||||| ||||||
Sbjct 253 TACGGAGAGAAATGGACAATCTT-TTCAACACATCTAAATCTAACAAACATCTTTGGGAA 311
Query 442 CAGATTTCG-TCTAAGATGAGAGAAAAAGGGTTTGATCGATCTCCGACTATGTGTACTGA 500
||||||||| | || |||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 312 CAGATTTCGAGC-AAAATGAGAGAGAAAGGGTTTGATCGATCACCAACTATGTGTACGGA 370
Query 501 TAAATGGAGGAATC-TGTTGAAAGAGTTTAAGAAAGCTAAG---C---ATCATGATAGAG 553
|| |||||||| | | |||||||||||||||||||||||| | || |||||| ||
Sbjct 371 CAAGTGGAGGAA-CATATTGAAAGAGTTTAAGAAAGCTAAGTATCAAGATGATGATAAAG 429
Query 554 -GA-AA-T---GGATCGGCGAAGATGTCGTATTACAAAGAGATTGAAGATATTCTTAGAG 607
| || | ||||| |||||||||| |||||||||||||||||||| ||| ||| ||
Sbjct 430 CAACAAGTGGAGGATCAACGAAGATGTCTTATTACAAAGAGATTGAAGACATTTTTACAG 489
Query 608 AGAGGAGCAAAAAAGTGACACCACCACAGTATAATAAGAG-CC--CTA--A-TACACCAC 661
| || | ||| |||||| | | | | ||||||| || ||| | ||| ||||
Sbjct 490 AAAGAAACAAGAAAGTG------GC-C-TTGT-ATAAGAGTCCTTCTACTACTACTCCAC 540
Query 662 CTA-CATCAGCCAAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGATGATAC- 719
| | | || || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 C-ATCTTCTGCTAAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGAAGATACT 599
Query 720 GAGCATTTCTTTTGGATCCGTTGAAGCTAATGGCAGGCCAGC-CTTAAACCTTGAAAGGC 778
| | ||| | ||| ||| ||||||||||||||||||||| | || ||| ||||||| ||
Sbjct 600 G-GTATTCCATTTACATCTGTTGAAGCTAATGGCAGGCCAACGCT-AAATCTTGAAACGC 657
Query 779 -GTCTTGATCATGATGGTCATCCTCTTGCAATCACTACAGCAGTTGATGCTGTTGCAGCA 837
| |||||||||||||||| |||||| | || || || | ||| | || |||||
Sbjct 658 AG-CTTGATCATGATGGTCTTCCTCTCCCCATTGCT---GC--T-GATCCCGTCACAGCA 710
Query 838 AATGGAGTTACTCCTTGGAATTGGAGAGAGACTC-CTGGAAACGGTGATGATAGTCATGG 896
||||||||| ||||||||| ||||||||| || | ||||||| || | | | | ||||
Sbjct 711 AATGGAGTTCCTCCTTGGAGTTGGAGAGACAC-CGCTGGAAATGGGG--G-T-G--ATGG 763
Query 897 TCAGCCTTTTGGTGGTAGGGTCATAACAGTGAAATTTGGTGACTATACAAGAAGAATCGG 956
|||||| |||| ||| ||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct 764 TCAGCCATTTGTTGGGAGGATCATAACAGTGAAATTTGGAGATTATACAAGAAGATTTGG 823
Query 957 TG-TTGATGGTAGTGCAGAAGCAATCAAAGAGG-TAATCAGATCTGCTTTTGGGTTAAGA 1014
| ||||||||| ||| ||||||||||| || | || ||||||| || ||| | ||||||
Sbjct 824 -GATTGATGGTACTGCTGAAGCAATCAAGGAAGCTA-TCAGATCCGCGTTTAGATTAAGA 881
Query 1015 ACTCGAAGGGCTTTTTGGTTAGAAGATGAAGATCAGATTATTCGCTGTCTTGACCGAGAC 1074
|| || | ||||||||| ||||||||||||| ||| ||||||||| |||||||||||||
Sbjct 882 ACAAGACGAGCTTTTTGGCTAGAAGATGAAGAACAGGTTATTCGCTCTCTTGACCGAGAC 941
Query 1075 ATGCCCTTAGGGAACTAT-CTACTCCGTCTGGATGATGG-ACTGGCCATTAGGGTTTGCC 1132
||||| |||||||||||| | ||||||| | ||||| || | | ||| |||| || ||||
Sbjct 942 ATGCCTTTAGGGAACTATAC-ACTCCGTGTTGATGAAGGGA-TAGCCGTTAGAGTGTGCC 999
Query 1133 ATTATGATGAATCCAA-CCAATTACCAGTCCATTCA-GAAGAGAAAATCTTCTACACTGA 1190
| ||||||||||| | || | |||||||||| || || ||||| || |||||||| ||
Sbjct 1000 ACTATGATGAATCTGATCCGCT-ACCAGTCCAT-CAAGAGGAGAAGATATTCTACACCGA 1057
Query 1191 AGAAGACTACCGCGAGTTTCT-GGCTCGAC-AGGGATGGTCAAGCCTGC-A-AGTT-GAT 1245
|||||| ||||| || ||||| |||||||| ||| |||| || | ||| | |||| ||
Sbjct 1058 AGAAGATTACCGAGA-TTTCTTGGCTCGACGAGG-ATGGACATGTCTGAGAGAGTTTGAC 1115
Query 1246 G-GTTTTAGGAACATAGAAAACATGGATGATCTTCAA-CCTGGTG-CTGTGTATCGAGGT 1302
| |||| |||||||||| || ||||| ||||||||| || |||| || | || |||||
Sbjct 1116 GCGTTTC-GGAACATAGACAATATGGACGATCTTCAATCC-GGTGTCT-TATACCGAGGA 1172
Query 1303 GTGAGATGAGGAAATGAGATC-ACAAAA 1329
||||||||| ||| | | || ||||||
Sbjct 1173 ATGAGATGAGAAAACGGG-TCTACAAAA 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59154150485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5