BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13460.1
Length=1870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471504 jgi|Araly1|471504|fgenesh2_kg.1__1458__AT1G13460.2 2560 0.0
Ahg936295 jgi|Araly1|936295|scaffold_500486.1 1208 0.0
> Ahg471504 jgi|Araly1|471504|fgenesh2_kg.1__1458__AT1G13460.2
Length=1927
Score = 2560 bits (1386), Expect = 0.0
Identities = 1607/1712 (94%), Gaps = 21/1712 (1%)
Strand=Plus/Plus
Query 171 AGTTGATGAAATTGTTCTTCT-AGATGTTTGTTTTGGGGATATGAACAAAGAAGAATCTG 229
|||| ||||| |||||||| | || || |||||||||||||||||||| |||||||||||
Sbjct 221 AGTT-ATGAATTTGTTCTTATAAGGTG-TTGTTTTGGGGATATGAACAGAGAAGAATCTG 278
Query 230 AGTTTAATACACTATGTGGAAACAGATTCTGAGTAAGCTTCCTAAGAAGTCTTCTTCTAA 289
||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 279 AGTTTAATAAACTATGTGGAAACAGATTCTAAGTAAGCTTCCTAAGAAGGCTTCTTCTAA 338
Query 290 GAACCATTCTTCTTCATCTAG-T----T-C--C-ACTTCAAAAAGTAGTGATAATGGCGC 340
|| |||||||||||||||||| | | | | ||||| ||||||||||||||||||||
Sbjct 339 GAGCCATTCTTCTTCATCTAGTTCCAATGCATCTACTTCCAAAAGTAGTGATAATGGCGC 398
Query 341 CAGTAAATCGGGTAATTCTCAAACCCAGAACGCTCCTCCTGTAAAACCTTCTGCTGATTC 400
| |||||||| |||||||| ||| ||||||||||| ||||||||||| ||||||||||
Sbjct 399 TGGGAAATCGGGGAATTCTCACACCAAGAACGCTCCTGCTGTAAAACCTGCTGCTGATTC 458
Query 401 AGGGTTTAAAGAAGGGAATTTGAAAGGAAATGGTAACGGTTTCACTCCATATGAAGCATT 460
|||||||||||| |||||||| ||||||||||| |||||||| || || |||||||||||
Sbjct 459 AGGGTTTAAAGATGGGAATTTAAAAGGAAATGGGAACGGTTTTACGCCGTATGAAGCATT 518
Query 461 GCCAGGTTTCAAAGATGTTCCTAATGCAGAGAAA-CAGAACTTGTTTGTGAGAAAA-CTC 518
||| ||||| ||||||||||| |||||||| ||| |||||||||||||||| |||| |||
Sbjct 519 GCCGGGTTTTAAAGATGTTCCAAATGCAGA-AAAGCAGAACTTGTTTGTGA-AAAAGCTC 576
Query 519 AGCTTGTGCTGTGTTGTTTTCGATTTCTCGGATCCAACGAAGAACGTTAAGGAAAAGGAT 578
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AACTTGTGCTGTGTACCGTTCGATTTCTCGGATCCAACGAAGAACGTTAAGGAAAAGGAG 636
Query 579 ATTAAGCGGCAGACATTGCTTGAGCTTGTGGATTATGTAGCTTCTCCTAATGGAAAGTTT 638
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 637 ATTAAGCGGCAGACATTGCTTGAGCTTGTGGATTATGTGGCTTCTCCCAATGGAAAGTTC 696
Query 639 AGTGAAACTGTGATTCAAGAAGTGGTTAGAATGGTTTCTGTTAACATATTCAGAACCTTG 698
|| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 697 AGCGAAACGGTTATTCAAGAAGTGGTTAGAATGGTTTCTGTTAATATATTCAGAACCTTG 756
Query 699 AATCCTCAACCGCGCGAGAATAAAGTTATTGATGCGTTAGACTTGGAGGAAGAAGAGCCT 758
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 757 AATCCTCAACCGCGCGAGAATAAAGTTATTGATGCCTTAGACGTGGAGGAAGAAGAGCCT 816
Query 759 TCTATGGATCCTACTTGGCCTCACTTGCAGCTTGTCTATGAAATTCTCCTGCGGCTTATT 818
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 817 TCTATGGATCCTACGTGGCCTCACTTGCAGCTTGTCTATGAGATTCTCCTGCGGCTTATT 876
Query 819 GCTTCACCAGAGACAGACACCAAGCTGGCTAAGAAATACATTGACCAATCTTTTGTCTCA 878
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GCTTCACCCGAGACAGACACCAAGCTGGCTAAGAAATACATTGACCAATCTTTTGTCTCA 936
Query 879 AGGTTACTTGATTTATTTGATTCAGAGGATCCTAGAGAAAGAGATTGTCTTAAGACCGTT 938
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 937 CGGATACTTGATTTATTTGATTCCGAGGATCCTAGAGAAAGAGATTGTCTTAAGACCGTT 996
Query 939 CTACATCGCATCTACGGTAAATTTATGGTTCATCGTCCTTTCATAAGGAAATCCATTAAT 998
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 CTACATCGCATCTACGGTAAATTTATGGTTCATCGTCCTTTCATAAGGAAATCCATTAAC 1056
Query 999 AACATTTTCTATCGGTTTGTTTTCGAGACTGAGAAACACAATGGGATTGCTGAGTTTCTA 1058
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1057 AACATTTTCTATCGGTTTGTTTTCGAGACTGAGAAACATAACGGGATTGCTGAGTTTCTA 1116
Query 1059 GAGATTTTGGGAAGTATCATCAATGGATTTGCTCTGCCGCTTAAAGACGAGCATAAAGTG 1118
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1117 GAGATTTTGGGAAGTATCATCAATGGATTTGCTCTGCCGCTTAAAGATGAGCATAAAGTG 1176
Query 1119 TTTTTGGTTAGAGCTTTGGTACCTCTTCACAAACCGAAAAGCTTGCAAATGTATCATCAG 1178
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TTTCTGGTTAGAGCGTTGGTACCTCTTCACAAACCGAAAAGCTTGCAAATGTATCATCAG 1236
Query 1179 CAATTGTCTTATTGTATCACACAGTTTGTGGAAAAAGATTGCAAACTCGCTGATACGGTT 1238
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1237 CAATTGTCTTATTGTATCACACAGTTTGTGGAAAAAGATTGCAAACTTGCTGATACGGTT 1296
Query 1239 ATAAGGGGACTACTCAAGTCTTGGCCTGTCACAAATAGTTCCAAAGAAGTCATGTTTCTA 1298
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1297 ATAAGAGGACTACTCAAGTCTTGGCCCGTCACAAATAGTTCCAAAGAAGTCATGTTTCTA 1356
Query 1299 AACGAGCTAGAGGAAGTATTAGAAGCAACTCAACCACCTGAATTCCAACGGTGTATGGTC 1358
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1357 AACGAGCTAGAGGAAGTATTAGAAGCAACTCAACCACCAGAATTCCAGCGATGTATGGTC 1416
Query 1359 CCATTGTTTCGCCAAGTTGCTCGGTGTTTGAACAGTCTCCATTTTCAGGTTGCAGAAAGA 1418
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1417 CCGTTGTTTCGCCAAGTTGCTCGGTGTTTGAACAGTCTCCATTTTCAGGTTGCCGAAAGA 1476
Query 1419 GCTTTGTTCTTATGGAACAACGATCATATCGAGAATCTAATAATGCAGAACCGGAAAGTT 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1477 GCTTTGTTCTTATGGAACAACGATCATATCGAGAATCTAATAATGCAGAACCGTAAAGTG 1536
Query 1479 ATTCTTCCAATCATATTCCCTGCATTGGAGAGAAACACTCAGAAGCATTGGAACCAAGCT 1538
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1537 ATTCTTCCAATCATTTTCCCTGCATTGGAAAGAAACACTCAGAAGCATTGGAACCAAGCT 1596
Query 1539 GTTCATAGCTTGACGTTGAATGTGCAGAAGATCTTTAATGACATTGATGCAGAGTTGTTT 1598
||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1597 GTTCATAGCTTAACGCTGAACGTGCAGAAGATATTTAATGACATTGATGCAGAGTTGTTC 1656
Query 1599 AAGGATTGTCTTGCTAAGTTTAGAGAAGATGAATCAAAAGAAGCTGAAATTGGCGCAAAA 1658
||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1657 AAGGAATGTCTTGCTAAGTTTAGAGAAGATGAATCGAAAGAAGCTGAAATTGACGCAAAA 1716
Query 1659 CGTGAGGCAACGTGGAAACGGTTGGAAGAAATTGGTAATCAAAAGCAAAAGAGTTCATTG 1718
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1717 CGTGAGGCGATATGGAAACGGTTGGAAGAAATTGGTAATCAAAAGCAGAAGAGTTCATTG 1776
Query 1719 TAAGATGTTTTAGTTGTAGAGACAGAGGTTTTGTTCTGTATTTTCTCGTTTTTTACTACA 1778
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1777 TAAGATGTTTTAGTTGTAGAGACAGAGGTTTTGTTCTGTAATTTCTTGTTTTTTACTACA 1836
Query 1779 TTGGAAAATTGGGTTTGTTTTTCTT---A-CTCTCCAGAAAAACTTAGTGAGAAAAAAGT 1834
||||||| | |||||| ||||| || | ||||||||||||||||||||||||||| ||
Sbjct 1837 TTGGAAACTAGGGTTTTTTTTTTTTTTTATCTCTCCAGAAAAACTTAGTGAGAAAAA-GT 1895
Query 1835 TTCAGATTCGTTTTCTTTGAAGAGATTGCAAA 1866
||||||||||| ||||||||||||||||||||
Sbjct 1896 TTCAGATTCGTCTTCTTTGAAGAGATTGCAAA 1927
Score = 213 bits (115), Expect = 4e-54
Identities = 129/135 (96%), Gaps = 3/135 (2%)
Strand=Plus/Plus
Query 1 AAATTAAAATAGAATTGAGaaaaaaaaGTTTGATCAGCCATCGGAGGAGAAGAGAGAATG 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1 AAATTAAAATAGAATTGAGAAAAAAAAGTTTGATCAGCCATCGGAG-AGAAGAAAGAATG 59
Query 61 ATAGATAACTGGATCACGAGAAGTCACAAATCTCAAAGAAGAAGAAAGAAAACCAAAA-T 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 60 ATAGATAACTGGATCACGAGAAGTCACAAATCTCAAAGAAGAAGAAAGAAAAC-AAAACT 118
Query 120 CAAGAACAATAACAA 134
|||||||| |||||
Sbjct 119 TAAGAACAAGAACAA 133
> Ahg936295 jgi|Araly1|936295|scaffold_500486.1
Length=1602
Score = 1208 bits (654), Expect = 0.0
Identities = 1063/1261 (84%), Gaps = 25/1261 (2%)
Strand=Plus/Plus
Query 440 TTTCACTCCATATGAAGCATTGCCAG-GTTTCAAAGATGTTCCTAATGCAGAGAAA-CAG 497
||| ||||| |||||||||||||| | |||| ||||||||||| || | || ||| ||
Sbjct 308 TTT-ACTCCTTATGAAGCATTGCC-GAGTTTTAAAGATGTTCCAAACACGGA-AAAGCAA 364
Query 498 AACTTGTTTGTGAGAAAA-CTCAGCTTGTGCTGTGTTGT-TTTCGATTTCTCGGATCCAA 555
|||||||| | | |||| | | ||||||| |||| || ||| |||||| | ||||| |
Sbjct 365 AACTTGTTCAT-AAAAAAGTTGAACTTGTGCCGTGTAGTGTTT-GATTTCACAGATCCTA 422
Query 556 CGAAGAACGTTAAGGAAAAGGATATTAAGCGGCAGACATTGCTTGAGCTTGTGGATTATG 615
| ||||| | |||||||| || |||||| |||||||||| || ||||||||||| ||||
Sbjct 423 CAAAGAATATCAAGGAAAAAGAGATTAAGAGGCAGACATTACTGGAGCTTGTGGACTATG 482
Query 616 TAG-CTTCTCCTAATGGAAAGTTTAGTGAAACTGTG-ATTCAAGAAGTGGTTAGAATGGT 673
| | ||||||||||||||||||||| | || || | || |||||||| ||| | |||||
Sbjct 483 T-GAATTCTCCTAATGGAAAGTTTAGCG-AAGTGGGTATCCAAGAAGTCGTTCGGATGGT 540
Query 674 TTCTGTTAACATATTCAGAAC-CTTGAATCCTCAACCGCGCGAGAATAAAGTTATTGATG 732
|||| ||||||||| ||||| | | ||||||||||| || || ||||||||||||||||
Sbjct 541 CTCTGCTAACATATTTAGAACGC-TAAATCCTCAACCACGGGAAAATAAAGTTATTGATG 599
Query 733 CGTTAGACTTGGAGGAAGAAGAGCCTTCTATGGATCCTACTTGGCCTCACTTGCAGCTTG 792
| |||||| ||||||| ||||| ||||| ||||||| | | |||||||||||||||||||
Sbjct 600 CCTTAGACCTGGAGGAGGAAGAACCTTCCATGGATCTTGCATGGCCTCACTTGCAGCTTG 659
Query 793 TCTATGAAATTCTCCTGCGGCTTATTGCTTCACCAGAGACAGACACCAAGCTGGCTAAGA 852
| ||||| || || || || || ||||||| || || || ||||||||| |||| ||||
Sbjct 660 TGTATGAGCTTTTCTTGAGGTTTGTTGCTTCGCCTGAAACTGACACCAAGTTGGCGAAGA 719
Query 853 AATACATTGACCAATCTTTTGTCTCAAGGTTACTTGATTTATTTGATTCAGAGGATCCTA 912
||| || || ||||||||||||| |||| || |||||||||||||| ||||||||||
Sbjct 720 GATATATAGATCAATCTTTTGTCTTGCGGTTGCTCGATTTATTTGATTCCGAGGATCCTA 779
Query 913 GAGAAAGAGATTGTCTTAAGACCGTTCTACATCGCATCTACGGTAAATTTATGGTTCATC 972
|||||||||||||||| || ||| |||| ||||| ||||| |||||||||||||| || |
Sbjct 780 GAGAAAGAGATTGTCTGAAAACCATTCTCCATCGGATCTATGGTAAATTTATGGTACACC 839
Query 973 GTCCTTTCATAAGGAAATCCATTAATAACATTTTCTATCGGTTTGTTTTCGAGACTGAGA 1032
| |||||||| ||||||||||| || ||||| |||||| ||||||||||||| || ||||
Sbjct 840 GACCTTTCATCAGGAAATCCATAAACAACATCTTCTATAGGTTTGTTTTCGAAACAGAGA 899
Query 1033 AACACAATGGGATTGCTGAGTTTCTAGAGATTTTGGGAAGTATCATCAATGGATTTGCTC 1092
|||| || ||||||||||||||||| || || ||||| ||||||||||||||||||||||
Sbjct 900 AACATAACGGGATTGCTGAGTTTCTTGAAATCTTGGGTAGTATCATCAATGGATTTGCTC 959
Query 1093 TGCCGCTT-AAAGACGAGCATAAAGTGTTT-TTGGTTAGAGCTTTGGTACCTCTTCACAA 1150
| || ||| ||||||||||| ||||||||| || || ||| |||| ||||||| |||||
Sbjct 960 TTCC-CTTGAAAGACGAGCACAAAGTGTTTCTT-GTCCGAGTTTTGATACCTCTCCACAA 1017
Query 1151 ACCGAAAA-GCTTGCAAATGTATCATCAGCAATTGTCTTATTGTATCACACAGTTTGTGG 1209
||| |||| |||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1018 ACC-AAAATGCTTGCAAATGTATCAGCAACAATTGTCTTATTGTATCACACAGTTTGTGG 1076
Query 1210 AAAAAGATTGCAAACTCGCTGATACGGTTATAAGGGGACTACTCAAGTCTTGGCCTGTCA 1269
|||| ||||||||||| |||||||| |||||||| ||| | | || | |||||| || |
Sbjct 1077 AAAAGGATTGCAAACTTGCTGATACAGTTATAAGAGGATTGTTGAAATATTGGCCAGTGA 1136
Query 1270 CAAATAGTTCCAAAGAAGTCATGTTTCTAAACGAGCTAGAGGAAGTATTAGAAGCAACTC 1329
|||||||||||||||||||||||||||| || ||| | ||||||||| | ||||||||||
Sbjct 1137 CAAATAGTTCCAAAGAAGTCATGTTTCTGAATGAGTTGGAGGAAGTACTCGAAGCAACTC 1196
Query 1330 AACCACCTGAATTCCAACGGTGTATGGTCCCATTGTTTCGCCAAGTTGCTCGGTGTTTGA 1389
| ||||| ||||| |||||||| ||||| ||| ||||||||||| | || || |||||||
Sbjct 1197 AGCCACCAGAATTTCAACGGTGCATGGTACCACTGTTTCGCCAAATAGCCCGATGTTTGA 1256
Query 1390 ACAGTCTCCATTTTCAGGTTGCAGAAAGAGCTTTGTTCTTATGGAACAACGATCATATCG 1449
||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||| || |
Sbjct 1257 ACAGTCTGCATTTTCAGGTTGCAGAGAGAGCTTTATTCTTATGGAACAACAATCACATTG 1316
Query 1450 AGAATCTAATAATGCAGAACCGGAAAGTTATTCTTCCAATCATATTCCCTGCATTGGAGA 1509
||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 1317 AGAATCTGATAATGCAGAACCGTAAAGTCATTCTTCCAATTATATTCCCTGCATTGGAGA 1376
Query 1510 GAAACACTCAGAAGCATTGGAACCAAGCTGTTCATAGCTTGACGTTGAATGTGCAGAA-G 1568
|||| | ||||| ||||||||||||||||||||||||||||| | || || | ||| |
Sbjct 1377 GAAATGCACAGAAACATTGGAACCAAGCTGTTCATAGCTTGACACTAAACGTAC-GAAAG 1435
Query 1569 ATCTTTAATGACATTGATGCAGAGTTGTTTAAGGATTGTCTTGCTAAGTTTAGAG-AAGA 1627
|| ||| ||||| |||| | |||||||| || || || ||||||||||| | || ||||
Sbjct 1436 ATATTTCATGACCTTGACCCTGAGTTGTTCAAAGAATGCCTTGCTAAGTTCA-AGGAAGA 1494
Query 1628 TGAATCAAAAGAAGCTGAAATTGGCGCAAAACGTGAGGCAACGTGGAAACGGTTGGAAGA 1687
||||||||||| |||||||| | ||||||||||| || || |||||||| ||||||||
Sbjct 1495 TGAATCAAAAGCAGCTGAAACCGAAGCAAAACGTGAAGCCACTTGGAAACGATTGGAAGA 1554
Query 1688 A 1688
|
Sbjct 1555 A 1555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70238411780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5