BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13470.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471506 jgi|Araly1|471506|fgenesh2_kg.1__1460__AT1G13470.1 1408 0.0
Ahg312360 jgi|Araly1|312360|fgenesh1_pm.C_scaffold_1001140 793 0.0
Ahg920228 jgi|Araly1|920228|scaffold_101509.1 643 0.0
Ahg911139 jgi|Araly1|911139|Al_scaffold_0001_1393 250 2e-65
> Ahg471506 jgi|Araly1|471506|fgenesh2_kg.1__1460__AT1G13470.1
Length=1216
Score = 1408 bits (762), Expect = 0.0
Identities = 869/922 (94%), Gaps = 2/922 (0%)
Strand=Plus/Plus
Query 264 CCTGTCGTTTTCATTCCTGTTCTTGATCAACCCTTATCTTCAAACCGTTACTATGTCATT 323
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 295 CCTGTCGTTTTCATTCCGGTTCTTGATCAGCCCTTATCTTCAAACCGTTACTATGCCATT 354
Query 324 AAACGAGGCGGGAAACACTCAGGAAAAGCTTCGGCTAATGCGAAAGAGGAAGACAGAGTC 383
||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 355 AAAGGAAGCGGGAAACACTCAGGAGAAGCTTCGGCTAATGCAAAAGAGGAAGACAGAGTC 414
Query 384 CCCTGCTGTTTTTGTTTCAGCTATGTTCCTGAAGCTAAGCCACAAGAAGCAGATCCTAAT 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CCCTGCTGTTTTTGTTTCAGCTATGTTCCTGAAGCTAAGCCACAAGAAGCAGATCCTAAT 474
Query 444 GACATATATCAGCAATTCCAGATCCATCAAAAACGATCATCATCTCGCTATTACACTGCC 503
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 475 GACATATATCAGCAATTCCAGATCCATCAAAAACGATCATCATCTCGCTGTTACACTGCC 534
Query 504 ACTTCTGTTGCTCCTAACGGGAAACCACCAGAGTTTCTTAAGAGAAAGTATTGGAACGCT 563
|||||||||||||||||||||| ||||||| ||||||| |||| |||||||||||||| |
Sbjct 535 ACTTCTGTTGCTCCTAACGGGATACCACCAAAGTTTCTAAAGACAAAGTATTGGAACGTT 594
Query 564 GAGTACTCGACATCTGAGGACTTTGGTCTAAAAGATGATGCAAAAGGTATTTACACTGAG 623
||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 595 GAGTATTCGACATCAAAAGACTTTGGTCTAAGAGATGATGCAAAAGGTATTTACACTGAG 654
Query 624 ATTCGTTCTGAGCTTCCTAGTGATTTTAATACAAGCGTTGTGGTAGGAAAATGGTATGTC 683
||||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||
Sbjct 655 ATTCGTTCTGAGCTTCCTAATGATGTGAATACAAGTGTTGTGGTAGGAAAATGGTATGTC 714
Query 684 CCTTTCATATTTGTGAAGGAAGGAAATGCAAAGGATCAGCTTAAGAGCTCAGCTTATTAC 743
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 715 CCTTTCATATTTGTGAAGGAAGGAAATGCAAAGGATCAGCTTAAGAGCTCAACTTATTAC 774
Query 744 AGCATGATTCTTCT-ACAAAGATGGGAGGAGGTTTACTCTTGTGAAAACGCTTACAACGA 802
|||||||||||| | | |||||||||| |||||||| |||||||||||||| || |||||
Sbjct 775 AGCATGATTCTTATTA-AAAGATGGGAAGAGGTTTATTCTTGTGAAAACGCGTATAACGA 833
Query 803 AAACCGCGAGGTTGTAGTTGATGTTGAAGTGGAACCAGAAGTTGTGAAGCTTGAGGGACA 862
||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| |||||
Sbjct 834 AAACCGCGAAGTTGTAGTTAATGTTGAAGTGGAAACAGAAGTTGTGAAGCTTGAAGGACA 893
Query 863 AGAAATTGGGAAAAATACAAAAAGGGTGGATGAAAATGGGGTTTTTTGGTTTGCGGTTGC 922
||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 894 AGAGATTGGGAAAAATACAAAAAGTGTGGATGAAAATGGGGTTGTTTGGTTTGCGGTTGC 953
Query 923 AGAGAAGAGGATAGGTTTGAGATCTGTGGTCATGGAGAGGATGAAATGGGAAGAGGAGAG 982
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 954 AGACAAGAGGATAGGTTTGAGATCTGCGGTCATGGAGAGAATGAAATGGGAAGAGGAGAG 1013
Query 983 ATTCGGGTGGAAGATTGAACCGCAAAGAGCAGTGGTTAAGAAATCTGAGAGATTTAATGG 1042
||| |||||||| | ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1014 ATTTGGGTGGAAAAGCGAACCGCGAAGAGCAGTGGTTAAGAAATCTGAGAGATTTGATGG 1073
Query 1043 AGGCGGTTCGAATTGGAAGAGTTATAGATGTTATGTGTTGGTGGAGAGCTTTGAATTGAG 1102
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1074 AGGCGGTTCGAATTGGAAGAGTTATAGATGTTATGTGTTGGTGGAGAGCTTTGAGTTGAG 1133
Query 1103 GAGAAAGGATAAGAGTTTAGTGTTGACATTTGAGTTTAAGCATGTTGATAAGTTGAGAAC 1162
|||||||||| |||||||||| ||| ||||||| ||||| ||||||||||||||||||||
Sbjct 1134 GAGAAAGGATGAGAGTTTAGTATTGTCATTTGATTTTAAACATGTTGATAAGTTGAGAAC 1193
Query 1163 CAAGTGGGAATCATGAGAGATT 1184
|||||||||||||||| |||||
Sbjct 1194 CAAGTGGGAATCATGAAAGATT 1215
Score = 359 bits (194), Expect = 3e-98
Identities = 227/242 (94%), Gaps = 5/242 (2%)
Strand=Plus/Plus
Query 1 AAAAACCACTGAAATATCTTCGCCGGTTATAAC-CAAAAATGTATGTTACGAGGCGTTTG 59
||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 1 AAAAACCACTGAAATATCTTCACCGGTTATAACAAAAAAATGTATGTTACAAGGCGTTTG 60
Query 60 TCGGAATACCAAAGAAACAGATCGGAGTTGCCGGAAAGTCCAAACTCCGGCGTACTTATA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGGAATACCAAAGAAACAGATCGGAGTTGCCGGAAAGTCCAAACTCCGGCGTACTTATA 120
Query 120 ATTCAAGATGAAGAGTCAAGGCCAACTTGTTGCTTCGGATCTTGCTACCG-GGCTACACT 178
||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||| |||
Sbjct 121 ATTCAAGATGATGAGTCAAAGCCAACTTGTTGCTTCGGATCTTGCTAC-GAGGCTAAACT 179
Query 179 CAAAGGCTTACC-TTTCCCACAGAACGCGAACCTGATTGTATCTGAAAGCCGCATATTTC 237
|||||||||||| ||||| |||||||||||| |||| ||||| ||||||||||| |||||
Sbjct 180 CAAAGGCTTACCGTTTCC-ACAGAACGCGAAGCTGAGTGTATATGAAAGCCGCACATTTC 238
Query 238 TT 239
||
Sbjct 239 TT 240
> Ahg312360 jgi|Araly1|312360|fgenesh1_pm.C_scaffold_1001140
Length=2319
Score = 793 bits (429), Expect = 0.0
Identities = 903/1124 (80%), Gaps = 63/1124 (6%)
Strand=Plus/Plus
Query 87 TTGCCGGAAAGTCCAAACTCCGGCGTACTTATAATTCAAGATGAAGAGTCAAGGCCAACT 146
||||||||| ||||||||||||| |||||| | |||||||| ||||| |||| ||| |||
Sbjct 1216 TTGCCGGAAGGTCCAAACTCCGGAGTACTTGTGATTCAAGACGAAGACTCAAAGCCCACT 1275
Query 147 TGTTGCTTCGGATCTTGCTACCG--GGCT-ACACTCAAAGGCTTACCTTTCCCACAGAAC 203
|||||||| ||| ||||||| || || | | ||||||||| ||||| |||||||| |||
Sbjct 1276 TGTTGCTTTGGAACTTGCTA-CGATGG-TGA-ACTCAAAGGATTACCATTCCCACAAAAC 1332
Query 204 GCGAACCTGATTGT-ATCTGA-A-AGCCGCATATTTCTTAA-CCAGACGATTACTTA-TA 258
|| || |||| ||| | || | | | ||| | | | | || ||| || | ||| |
Sbjct 1333 GCAAAGCTGACTGTGA-CTTACAGAACCGGA-ACTGGTAAAGACAGGCG--CAGTTACCA 1388
Query 259 TAGATCC-TGTCGTTTTCATTCCTGTTCTTGATCAACCCTTA-TCTTCAAACCGTTACTA 316
| || || ||| | |||||||| |||||||||| | ||||| | ||| |||||||| ||
Sbjct 1389 T-GA-CCAAGTCCTGTTCATTCCGGTTCTTGATC-AGCCTTATTATTCCAACCGTTATTA 1445
Query 317 TGTCATTAAACGAGGCGGGAAACACTCAGGAAAAGCTTCGGCTAATGCGAAAGAGGAAGA 376
||||||||||||| | ||||| || |||||| | |||| || | ||| ||||| |||||
Sbjct 1446 TGTCATTAAACGACGTGGGAAGCAATCAGGAGGATCTTCAGCGAGTGCAAAAGAAGAAGA 1505
Query 377 CAGAGTCCCCTGCTGTTTTTGTTTCAGCTATGTTCCTGAAGCTAAGCCACAAGAAGCAGA 436
||||||||| ||||| ||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 1506 CAGAGTCCCTTGCTGCTTTTGCTTCAGCTATGTTCCTGAAGTTAAACCACAAGAAGCAGA 1565
Query 437 TCCTAATGACATATATCAGCAATTCCAGATCCATCAAAAACGATCATCATCTCGCTATTA 496
|||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1566 TCCTTATGACATTTATCAGCAATTCCAGATCCATCAAAAACAATCATCATCTCGCTATTA 1625
Query 497 CACTGCCACTTCTGTTGCTCCTAACGGGAAACCACCAGAGTTTCTTAAGAGAAAGTATTG 556
||||||||||| ||||||||| | |||| |||||||||||| |||||||||||||||||
Sbjct 1626 TACTGCCACTTCGGTTGCTCCTGATGGGATACCACCAGAGTTCCTTAAGAGAAAGTATTG 1685
Query 557 GAACGCTGAGTACTCGACAT-CTGAGGACTTTGGTCTAAAAGATGATGCAAAAGGTATTT 615
|| || || ||| |||| || | | ||||||||| | | ||||||||||||||| ||
Sbjct 1686 GACCGTTGGGTATTCGA-ATTCCCAAGACTTTGGTTTGATAGATGATGCAAAAGGGATCA 1744
Query 616 ACACTGAGATTCGTTCT-GAGCTTCCTAGTGATTTTAATACAAGCGTTGTGGTAGGAAAA 674
||||| || |||||| | |||||||| | ||| | |||||||| ||||||||||| |||
Sbjct 1745 ACACTAAGCTTCGTT-TAGAGCTTCCCAACGATGTGAATACAAGTGTTGTGGTAGGGAAA 1803
Query 675 TGGTATGTCCCTTTCATATTTGTGAAGGAAGGAAATGCAAAGGATCAGCTTAAGAGCTCA 734
|||||||| ||||||||||||||||| ||| || ||||||| |||||| |||||| ||||
Sbjct 1804 TGGTATGTTCCTTTCATATTTGTGAAAGAAAGAGATGCAAATGATCAGATTAAGATCTCA 1863
Query 735 GCTTATTACAGCATGATTCTTCTACAAAGATGGGAGGAGGTTTACTCTTGTGAAAACGCT 794
|||||||||||||||| ||| |||||||||||| ||||||||||| || ||||||| |
Sbjct 1864 GCTTATTACAGCATGACGCTTAAACAAAGATGGGAAGAGGTTTACTCATGCGAAAACGTT 1923
Query 795 --TA-CAACGAAAACCGCG-AG-G-TTGTAGTTGATGTTGAAGTGGAACCAGAAGTTGTG 848
|| ||||||||| | | || | ||||| |||||||||| || ||| ||||||| |||
Sbjct 1924 AATAACAACGAAAAAGGAGGAGAGGTTGTACTTGATGTTGACGTAGAAACAGAAGTGGTG 1983
Query 849 AAGCTTGAGGGACAAGAAA-T-TGGGAAAA-ATACAAAAAG-GGTGGATGAAAATGGGGT 904
||||||||||||||||||| | | | | | |||| | ||||||| ||| |
Sbjct 1984 AAGCTTGAGGGACAAGAAACTATTTCTAGAGAGACAAGTGGTGGTGGATTTGTTTGG--T 2041
Query 905 TTTTTGGTTT-GCGGTTG-CAGAGAAGA---G--GATAGGT-TTGAGATCTGTGGTCATG 956
|| || ||| | || || |||| |||| | ||||||| ||| | ||||||||| ||
Sbjct 2042 TTAGTGTTTTAGGGGATGACAGACAAGACAAGAAGATAGGTCTTGGG-TCTGTGGTCGTG 2100
Query 957 GAGAGGATGAAATGGGAAGAGGAGAGATTCGGGTGG--AAGATTGAAC-CGCAAAGAGC- 1012
||||||||||||||||||||||| || || |||||| || | || || ||||| |
Sbjct 2101 GAGAGGATGAAATGGGAAGAGGAAAGGTTTGGGTGGTTAA-ACA-AAGGCG-AAAGATCT 2157
Query 1013 AGTGGTTAAGAAATCTGAGAGATTTAATGGAGGCGGTTCGA---ATTGGAAGAGTTAT-A 1068
| |||||| ||| ||| |||| | ||| ||||| | |||||||||||||| |
Sbjct 2158 AACA-TTAAGAGATCAGAGGGATTCGA---AGGTGGTTCAACGCATTGGAAGAGTTATCA 2213
Query 1069 GATGTTATGTGTTGGTGGAGAGCTTTGAATTGAGGAGAAAGGATAAGAGTTTAGTGTTGA 1128
||||||||| ||| | |||||||| ||||||| ||||| |||| |||||| |||||||
Sbjct 2214 -ATGTTATGTATTGATAGAGAGCTTCGAATTGAAGAGAATGGATGGGAGTTTGGTGTTGA 2272
Query 1129 CATTTGAGTTTAAGCATGTTGATAAGTTGA-GAACCAAGTGGGA 1171
||| |||||||| ||||||||||||||||| || | ||||||||
Sbjct 2273 CATATGAGTTTAGGCATGTTGATAAGTTGAAGAGC-AAGTGGGA 2315
> Ahg920228 jgi|Araly1|920228|scaffold_101509.1
Length=956
Score = 643 bits (348), Expect = 0.0
Identities = 454/505 (90%), Gaps = 8/505 (2%)
Strand=Plus/Plus
Query 349 AAGCTTCGGCTAATGCGAAAGAGGAAGACAGAGTCCCCTGCTGTTTTTGTTTCAGCTATG 408
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 AAGCTTCGGCTAATGCAAAAGAGGAAGACAGAGTCCCCTGCTGTTTTTGTTTCAGCTATG 225
Query 409 TTCCTGAAGCTAAGCCACAAGAAGCAGATCCTAATGACATATATCAGCAATTCCAGATCC 468
|||||||||||||||||||| || |||||||| |||| ||||| || ||||| ||||||
Sbjct 226 TTCCTGAAGCTAAGCCACAACAACCAGATCCTTATGATATATACCAACAATTTGAGATCC 285
Query 469 ATCAAAAACGATCATCA-TCTCGCTA--TTACACTGCCACTTCTGTTGCTCCTAACGGGA 525
||||| ||| |||| | ||| | |||| ||| || || ||||||||| | |||
Sbjct 286 ATCAAC--CGAA-ATCACTGTCGAGAAATTACTTTGCAACATCCGTTGCTCCTGATGGGG 342
Query 526 AACCACCAGAGTTTCTTAAGAGAAAGTATTGGAAC-GCTGAGTACTCGACATCTGAGGAC 584
|||||||||||||||||||||||||||||||| | | ||||||||||||||| || |||
Sbjct 343 TACCACCAGAGTTTCTTAAGAGAAAGTATTGGA-CTGTTGAGTACTCGACATCAGAAGAC 401
Query 585 TTTGGTCTAAAAGATGATGCAAAAGGTATTTACACTGAGATTCGTTCTGAGCTTCCTAGT 644
|||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 402 TTTGGTTTAAGAGATGATGCAAAAGGTATTTACAATGAGATTCGTTCTGAGCTTCCTAAT 461
Query 645 GATTTTAATACAAGCGTTGTGGTAGGAAAATGGTATGTCCCTTTCATATTTGTGAAGGAA 704
||| | ||| |||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 462 GATGTGAATGCAAGTGTTGTGGTAGGAAAATGGTATGTCCCTTTCATATCTGTGAAGGAA 521
Query 705 GGAAATGCAAAGGATCAGCTTAAGAGCTCAGCTTATTACAGCATGATTCTTCTACAAAGA 764
|||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||
Sbjct 522 GGAAATGCAAAGGATCAGCTTAAGAGCTCAACTTATTATAGCATGATTCTTATCCAAAGA 581
Query 765 TGGGAGGAGGTTTACTCTTGTGAAAACGCTTACAACGAAAACCGCGAGGTTGTAGTTGAT 824
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 582 TGGGAAGAGGTTTACTCTTGTGAAAACGCTTACAACGAGAACCGCGAGGTTGTAGTTAAT 641
Query 825 GTTGAAGTGGAACCAGAAGTTGTGA 849
|||||||||||| ||||||||||||
Sbjct 642 GTTGAAGTGGAAACAGAAGTTGTGA 666
Score = 346 bits (187), Expect = 2e-94
Identities = 235/258 (91%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 926 GAAG-AGGATAGGTTTGAGATCTGTGGTCA-TGGAGAGGATGAAATGGGAAGAGGAGAGA 983
|||| ||||| ||||||||| ||||||| | | |||||||||||||||||||||||||||
Sbjct 682 GAAGAAGGATGGGTTTGAGAACTGTGGTGACT-GAGAGGATGAAATGGGAAGAGGAGAGA 740
Query 984 TTCGGGTGGAAGATTGAACCGCAAAGAGCAGTGGTTAAGAAATCTGAGAGATTTAATGGA 1043
|| |||||||| | ||||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 741 TTTGGGTGGAAAAGCGAACCGCGAAGAGCAGTGGTTAAGAGATCTGAGAGATTTGATGGA 800
Query 1044 GGCGGTTCGAATTGGAAGAGTTATAGATGTTATGTGTTGGTGGAGAGCTTTGAATTGAGG 1103
|| |||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||
Sbjct 801 GGTGGTTCGAATTGGAAGAATTATAGATGTTATGTGTTTGTGGAGAGCTTTGAGTTGAGG 860
Query 1104 AGAAAGGATAAGAGTTTAGTGTTGACATTTGAGTTTAAGCATGTTGATAAGTTGAGAACC 1163
|||| |||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 861 AGAATGGATGAGAGTTTAGTGTTGGCATTTGAGTTTAAACATGTTGATAAGTTGAGGACC 920
Query 1164 AAGTGGGAATCATGAGAG 1181
|||||||| |||||||||
Sbjct 921 AAGTGGGATTCATGAGAG 938
> Ahg911139 jgi|Araly1|911139|Al_scaffold_0001_1393
Length=2049
Score = 250 bits (135), Expect = 2e-65
Identities = 425/558 (76%), Gaps = 48/558 (9%)
Strand=Plus/Plus
Query 644 TGATTTTAATACA-AGCGTTGTGGTAGGAAAATGGTATG-TCCCTTTCATATTTGTGAAG 701
|||||| ||| | |||||||| || || |||||||||| |||| ||| ||||||| |||
Sbjct 1506 TGATTTCGATA-AGAGCGTTGTAGTTGGGAAATGGTATGTTCCC-TTCTTATTTGTTAAG 1563
Query 702 GAAGGAAATGCAAAGGATCAGCTTAAGAGCTCAGCT-TATTACAGCATGATTCTTCTA-C 759
|| || ||||||| |||||| | || | ||| | ||||| || |||| |||| | |
Sbjct 1564 GATGGTGATGCAAAAGATCAGATGAATAAATCA-ATGTATTATAGTATGACGCTTC-AGC 1621
Query 760 AAAGATGGGAGGAGGTTTAC-TCTTGTGAAAACGCTT-ACAAC--GAAA-ACCGCGAGGT 814
|||||| || ||||||| | || |||||||||| || ||||| ||| | || |||||
Sbjct 1622 AAAGATTTGAAGAGGTTTTCTTC-TGTGAAAACG-TTGACAACAATAAATATCGTGAGGT 1679
Query 815 TGTAGTTGATGTTGAAGTGGAACCAGAAGTTGTGAAGCTTG-AGG-GACAAGAAATTGGG 872
|||||||||||| || || ||| ||||||| || ||||||| ||| |||||| ||| |
Sbjct 1680 TGTAGTTGATGTGGAGGTAGAAACAGAAGTGGTCAAGCTTGAAGGAGACAAG--ATT--G 1735
Query 873 AAAAATACA-AAAAGG-GTGGATGAAAATGGGGTTTTTTGGTTTGCG-GT-TGCAGAGA- 927
|| | | | |||||| ||| || | |||| ||| | |||||| | || | ||| ||
Sbjct 1736 CAAGAGAGATAAAAGGTGTGAATTCAGATGGAGTTGTGTGGTTT-AGTGTCT-CAGCGAC 1793
Query 928 --AGAGGATAGGT-TTGAGATCTGTGGTCATGGAGAGGATGAAATGGGAAGAGGAGAGAT 984
| | ||| ||| ||| | ||||||||| |||||||||||||||||||||||||||| |
Sbjct 1794 TGATAAGATTGGTCTTG-GGTCTGTGGTCTTGGAGAGGATGAAATGGGAAGAGGAGAGGT 1852
Query 985 TCGGGTGGAAGATTGAACCGCAAAGAGC-A-G-TG--G--TTAAGA-AATCTGAGAGATT 1036
| || ||| || || || | || | | | | | |||||| || |||||| |||
Sbjct 1853 TTGGTTGGTCGAACAAAG-GCGATGAACTAAGGTCTAGCATTAAGAGAA-CTGAGAAATT 1910
Query 1037 T-AATGGA-GGCGGTTCGAATTGGAAGAGTTATAGATGTTATGTGTTGGTGGAGAGCTTT 1094
| || | | || || || ||||||||||||||||||| ||||| |||| |||||||||
Sbjct 1911 TGAA-G-ACGGTGGACCGCATTGGAAGAGTTATAGATGCTATGTACTGGTAGAGAGCTTT 1968
Query 1095 GAATTGAGGAGAAAGGATAAGAGTTTAGTGTTGACATTTGAGTTTAAGCATGTTGATAAG 1154
||||||| |||| ||| |||||| || ||||||| ||||||||| ||||||||||||
Sbjct 1969 GAATTGAAGAGAGCTGATGGGAGTTTGGTATTGACATATGAGTTTAAACATGTTGATAAG 2028
Query 1155 TTGA-GAACCAAGTGGGA 1171
|||| || | ||||||||
Sbjct 2029 TTGAAGAGC-AAGTGGGA 2045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5