BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13480.1
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471510 jgi|Araly1|471510|fgenesh2_kg.1__1464__AT1G13480.1 1912 0.0
Ahg312360 jgi|Araly1|312360|fgenesh1_pm.C_scaffold_1001140 893 0.0
Ahg471506 jgi|Araly1|471506|fgenesh2_kg.1__1460__AT1G13470.1 416 2e-115
> Ahg471510 jgi|Araly1|471510|fgenesh2_kg.1__1464__AT1G13480.1
Length=1299
Score = 1912 bits (1035), Expect = 0.0
Identities = 1201/1280 (94%), Gaps = 16/1280 (1%)
Strand=Plus/Plus
Query 1 ATCACCACCACAAGAACCAAACTAAAGATGTATGTTACAAGGCGTTTATCGGAATACCAG 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCACCATCACAAGAACCAAACTAAAGATGTATGTTACAAGGCGTTTATCGGAATACCAG 60
Query 61 AAAAAGCCATCGGAGCTGAAACTGCTTCCACCGGAAGGTCCAAACTCCGGCATAATGGTG 120
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 AAAAAACCATCGGAGCTGAAACTGCTTCCACCGGAAGGTCCAAACTCCGGAATAATGGTG 120
Query 121 ATTCAAGACGAAGAATCACAGGCCACTTGCTGCTTTGGTTCTTGCTATGAGGGTAGACTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTCAAGACGAAGAATCACAGGCCACTTGCTGCTTTGGTTCTTGCTATGAGGGTAGACTT 180
Query 181 AAGGGCTTGCCGTTTCCACAAAACGTGAAGCTGAATGCAGCGTATACTAGTGGAGGAGGA 240
|| ||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||
Sbjct 181 AAAGGCTTGCCGTTTCCACAAAACGTGAAGCTCAATGTAGCTTATACTAGTGGAGGAGGA 240
Query 241 GAACACCAGACAACACATCTTACTCCAGTTGTGTTCATTCCTGTTCTTGATCAGCCATTG 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GAACACCAGACAACACATCTTACTCCAGTTGTGTTCATCCCTGTTCTTGATCAGCCATTG 300
Query 301 TCTTCAAACCTTTACTATGTTTTACAAAGGCGTGGGAAGCATACTGGCAAAGCATCTGCA 360
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 301 TCTTCAAACCTTTACTATGTTATACAAAGGCGTGGGAAGCATACTGGGAAAGCATCTCCA 360
Query 361 AGTGCAACAGAGGAGGAGAGGGTTTCAAGCTGCTTTTGCTTTAGCTATATTCCTGACGCT 420
||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 361 AGTGCAAAAGAGGAGGAGAGAGTTTCAAGCTGCTTTTGCTTTAGCTATGTTCCTGAAGCT 420
Query 421 AAGCCACAAGAAGCAGATCCTTATGACATATACCAACAATTCGAGATCCATCAACGCCGA 480
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 AAGCCTCAAGAAGCTGATCCTTATGACATATACCAACAATTCGAGATCCATCAACGTCGA 480
Query 481 TCATCATCTCGCTATTACTCTGCCACTTCTGTTGCTTCTGATGGTGTACCACCAAATTAC 540
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 481 TCATCATCTCGCTATTACTCTGCCACTTCTGTTGCTTCTGATGGTGTGCCACCAGATTAC 540
Query 541 CTTAAGAGGAAAGATTGGTGGGTCAGCTACTCGACTTCGCACGACTTTGGTCTAAGAGAT 600
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 CTTAAGAGAAAAGATTGGTGGGTCAGTTACTCGACTTCGCACGACTTTGGTCTAAGAGAT 600
Query 601 GATGCAAAAGGGATTAACACAAAGCTTCGCTTAGACTCAGAACTTACTAGTTTAGGTAAG 660
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 601 GATGCTAAAGGGATTAACACAAAGCCTCGCTTAGACTCAGAGCTTACTAGTTTAGGTAAG 660
Query 661 AGTATTGAGATAGGGAAATGGTATGTTCCTTTCATATTTGTGATGGAAGGAGATGTAAAA 720
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGTGCTGAGGTAGGGAAATGGTATGTTCCTTTCATATTTGTGATGGAAGGAGATGTAAAA 720
Query 721 GATCAGATGAA-CAAATCGACGTTTTACAGCGTGACACTTCAACAAAGATGGGAAGAAGT 779
||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GATCAGATGAAGCAA-TCAACGTTTTACAGCGTGACACTTCAACAAAGATGGGAAGAAGT 779
Query 780 TTTCTTCTGCGAAAACATTGGCAATGAACATTTTGAGGTTGTAGTTGATGTTGATGTAGA 839
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTTCTTCTGCGAAAACATTAGCAATGAACATTTTGAGGTTGTAGTTGATGTTGATGTAGA 839
Query 840 AACAGAATCGGTGAAGCTTGAGGGACAAGAAACTAATTTGAGAGAGG-ATTCAGGTGATG 898
|||||||| ||||||||||||||||||||||||| | |||||||||| | ||||||||
Sbjct 840 AACAGAATTGGTGAAGCTTGAGGGACAAGAAACTCAGTTGAGAGAGGCAAA-AGGTGATG 898
Query 899 GAGTTGTTTGGTTTAGTGTCTTAAGGGATGAGAAAGACGACAAGAAGATAGGTCTTGGAT 958
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 899 GAGTTGTTTGGTTTAGTGTATTAAGGGATGAGAAAGAAGACAAGAAGATAGGTCTTGGGT 958
Query 959 CTGTGGTCGTAGAGAGGATGAAATGGGAAGAGGAAAGGTTTGGATGGTTAAACGAAGCAG 1018
|||||||||| ||||||||||||||||||||||||| |||||| ||||||||| || ||
Sbjct 959 CTGTGGTCGTGGAGAGGATGAAATGGGAAGAGGAAAAGTTTGGGTGGTTAAAC-AA--AG 1015
Query 1019 GCGAAAGATCTAACATTAAGAGATCAGAGAGATTTGAAGGCGGTTCATCGCATTGGAAGA 1078
||| ||||| || |||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 1016 GCGGAAGATTTAGCATTAAAAAATCAGAGCGATTTGAAGGCGGTTCATCGCATTGGAAGA 1075
Query 1079 GTTATCGATGTTATGTATTGATAGAGAGCTTTGAATTGACGAGAATGGATGGGAGTTTGG 1138
| |||| ||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||
Sbjct 1076 GCTATCAATGTTATGTATTGATAGAGAGCTTTGAGTTGAAGAGGATGGATGGGAGCTTGG 1135
Query 1139 TGTTGACATATGAGTTTAGGCATGTTGATAAGCTAAAGAGCAAGTGGGATTGATTTTCAT 1198
|||||||||| ||||||||||||||||||||| | |||||||||||||||||| |||| |
Sbjct 1136 TGTTGACATACGAGTTTAGGCATGTTGATAAGTTGAAGAGCAAGTGGGATTGAGTTTCTT 1195
Query 1199 TC-TGTTT-T--CAGTTTCGTT-GTGTGCCATCTTTTTGTTCAATAATCAATTTGGTGAA 1253
|| | ||| | ||||||| || ||||| |||||||| |||||||||||||||| ||||
Sbjct 1196 TCATCTTTGTAACAGTTTC-TTCGTGTGTCATCTTTTGGTTCAATAATCAATTTAATGAA 1254
Query 1254 TAAGTTTTTATGCAAGTTCA 1273
||||||||| | |||||||
Sbjct 1255 TAAGTTTTT-T--AAGTTCA 1271
> Ahg312360 jgi|Araly1|312360|fgenesh1_pm.C_scaffold_1001140
Length=2319
Score = 893 bits (483), Expect = 0.0
Identities = 974/1202 (81%), Gaps = 70/1202 (6%)
Strand=Plus/Plus
Query 25 AAGATGTATGTTACAAGGCGTTTATCGGAATACCAGAAAAAGC-CATCGGAGC-TGAAAC 82
||||||||||||||||||| | | ||||||||||||| ||| | | ||||| | ||| ||
Sbjct 1153 AAGATGTATGTTACAAGGCATCTCTCGGAATACCAGACAAA-CTCGTCGGA-CTTGACAC 1210
Query 83 TGCTTCCA---CCGGAAGGTCCAAACTCCGGCA-TAATGGTGATTCAAGACGAAGAATCA 138
| | || |||||||||||||||||||| | || | ||||||||||||||||| |||
Sbjct 1211 -G-AT-CATTGCCGGAAGGTCCAAACTCCGG-AGTACTTGTGATTCAAGACGAAGACTCA 1266
Query 139 CAGGCCACTTGCTGCTTTGGTTCTTGCTATGAGGGTAG-ACTTAAGGGCTTGCCGTTTCC 197
|| ||||||| |||||||| ||||||| || ||| | ||| || || || || || ||
Sbjct 1267 AAGCCCACTTGTTGCTTTGGAACTTGCTACGATGGT-GAACTCAAAGGATTACCATTCCC 1325
Query 198 ACAAAACGTGAAGCTGAATGCAG-CGTATACTAGTGGAGGAGG-AGAACACCAGACAACA 255
|||||||| ||||||| || | | || | | ||| || | || | ||| | ||
Sbjct 1326 ACAAAACGCAAAGCTGACTG-TGACTTACAGAACCGGAACTGGTA-AAGA-CAGGC-GCA 1381
Query 256 --CATC-TTACTCCAGTTGTGTTCATTCCTGTTCTTGATCAGCCATT-GTCTTCAAACCT 311
| | | || | ||| |||||||||| |||||||||||||| || | ||| ||||
Sbjct 1382 GTTACCATGAC-CAAGTCCTGTTCATTCCGGTTCTTGATCAGCC-TTATTATTCCAACCG 1439
Query 312 TTACTATGT-TTTACAAAGGCGTGGGAAGC-ATACTGGCA-AAGCATCTGCAAGTGCAAC 368
||| ||||| ||| || | |||||||||| || | || | | | || || |||||||
Sbjct 1440 TTATTATGTCATTA-AACGACGTGGGAAGCAAT-CAGG-AGGATCTTCAGCGAGTGCAAA 1496
Query 369 AGAGGAGGAGAGGGTTTCAAGCTGCTTTTGCTTTAGCTATATTCCTGACGCTAAGCCACA 428
||| || || || || | ||||||||||||| |||||| ||||||| | ||| |||||
Sbjct 1497 AGAAGAAGACAGAGTCCCTTGCTGCTTTTGCTTCAGCTATGTTCCTGAAGTTAAACCACA 1556
Query 429 AGAAGCAGATCCTTATGACATATACCAACAATTCGAGATCCATCAACGCCGATCATCATC 488
||||||||||||||||||||| || || |||||| ||||||||||| | |||||||||
Sbjct 1557 AGAAGCAGATCCTTATGACATTTATCAGCAATTCCAGATCCATCAAAAACAATCATCATC 1616
Query 489 TCGCTATTACT-CTGCCACTTCTGTTGCTTCTGATGGTG-TACCACCA-AATTACCTTAA 545
||||||||| | |||||||||| |||||| ||||||| | |||||||| | || ||||||
Sbjct 1617 TCGCTATTA-TACTGCCACTTCGGTTGCTCCTGATGG-GATACCACCAGAGTT-CCTTAA 1673
Query 546 GAGGAAAG-ATTGGTGGGTCAGCTACTCGACTTCGCACGACTTTGGTCTAAGAGATGATG 604
|| ||||| ||||| || | || |||| ||| || ||||||||| | | ||||||||
Sbjct 1674 GA-GAAAGTATTGGACCGTTGGGTATTCGAATTCCCAAGACTTTGGTTTGATAGATGATG 1732
Query 605 CAAAAGGGATTAACACAAAGCTTCGCTTAGA-C-TCAGAACTTACTAGTTTAGGTA-AGA 661
|||||||||| ||||| |||||||| ||||| | || ||| | | | | | || | |
Sbjct 1733 CAAAAGGGATCAACACTAAGCTTCGTTTAGAGCTTCCCAAC-GA-T-G-TGA-ATACA-A 1786
Query 662 GTATTGAGATAGGGAAATGGTATGTTCCTTTCATATTTGTGATGGAAGGAGATGTAAAAG 721
|| ||| | ||||||||||||||||||||||||||||||||| ||| |||||| ||| |
Sbjct 1787 GTGTTGTGGTAGGGAAATGGTATGTTCCTTTCATATTTGTGAAAGAAAGAGATGCAAATG 1846
Query 722 ATCAGATGAACAAATCGACG-TT-TTACAGCGTGACACTTCAACAAAGATGGGAAGAAGT 779
||||||| || | || | | || ||||||| |||| ||| |||||||||||||||| ||
Sbjct 1847 ATCAGATTAAGATCTC-A-GCTTATTACAGCATGACGCTTAAACAAAGATGGGAAGAGGT 1904
Query 780 TTTCTTC-TGCGAAAAC---ATTGGCAATG-AACA--TTTTGAGGTTGTAGTTGATGTTG 832
|| | || ||||||||| | | ||| | || | ||||||||| |||||||||
Sbjct 1905 TTAC-TCATGCGAAAACGTTAATAACAACGAAAAAGGAGGAGAGGTTGTACTTGATGTTG 1963
Query 833 ATGTAGAAACAGAA-TCGGTGAAGCTTGAGGGACAAGAAACTAATT-T-GAGAGAGGATT 889
| |||||||||||| | |||||||||||||||||||||||||| || | |||||| | |
Sbjct 1964 ACGTAGAAACAGAAGT-GGTGAAGCTTGAGGGACAAGAAACTATTTCTAGAGAGACAAGT 2022
Query 890 CAGGTGATGGAGTTGTTTGGTTTAGTGTCTTAAGGGATGAGAAAGACGACAAGAAGATAG 949
|||| |||| |||||||||||||||| ||| ||||||| | | | |||||||||||||
Sbjct 2023 --GGTGGTGGATTTGTTTGGTTTAGTGTTTTAGGGGATGACAGACAAGACAAGAAGATAG 2080
Query 950 GTCTTGGATCTGTGGTCGTAGAGAGGATGAAATGGGAAGAGGAAAGGTTTGGATGGTTAA 1009
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2081 GTCTTGGGTCTGTGGTCGTGGAGAGGATGAAATGGGAAGAGGAAAGGTTTGGGTGGTTAA 2140
Query 1010 ACGAAGCAGGCGAAAGATCTAACATTAAGAGATCAGAGAGATTTGAAGGCGGTTCATCGC 1069
|| || ||||||||||||||||||||||||||||||| |||| ||||| |||||| |||
Sbjct 2141 AC-AA--AGGCGAAAGATCTAACATTAAGAGATCAGAGGGATTCGAAGGTGGTTCAACGC 2197
Query 1070 ATTGGAAGAGTTATCGATGTTATGTATTGATAGAGAGCTTTGAATTGACGAGAATGGATG 1129
||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 2198 ATTGGAAGAGTTATCAATGTTATGTATTGATAGAGAGCTTCGAATTGAAGAGAATGGATG 2257
Query 1130 GGAGTTTGGTGTTGACATATGAGTTTAGGCATGTTGATAAGCTAAAGAGCAAGTGGGATT 1189
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2258 GGAGTTTGGTGTTGACATATGAGTTTAGGCATGTTGATAAGTTGAAGAGCAAGTGGGATT 2317
Query 1190 GA 1191
||
Sbjct 2318 GA 2319
> Ahg471506 jgi|Araly1|471506|fgenesh2_kg.1__1460__AT1G13470.1
Length=1216
Score = 416 bits (225), Expect = 2e-115
Identities = 718/945 (76%), Gaps = 77/945 (8%)
Strand=Plus/Plus
Query 274 TTCATTCCTGTTCTTGATCAGCCATTGTCTTCAAACCTTTACTATG-TTTTACAAAGG-C 331
|||||||| |||||||||||||| || |||||||||| |||||||| || |||||
Sbjct 304 TTCATTCCGGTTCTTGATCAGCCCTTATCTTCAAACCGTTACTATGCCATT--AAAGGAA 361
Query 332 GTGGGAAGCA-TACTGGCA-AAGCATCTGC-AAGTGCAACAGAGGAGGAGAGGGTTTCAA 388
| ||||| || | | || | |||| || || || ||||| |||||| || || || |
Sbjct 362 GCGGGAAACACT-CAGG-AGAAGCTTCGGCTAA-TGCAAAAGAGGAAGACAGAGTCCCCT 418
Query 389 GCTGCTTTTGCTTT-AGCTATATTCCTGACGCTAAGCCACAAGAAGCAGATCCTTATGAC 447
|||| ||||| ||| |||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct 419 GCTGTTTTTG-TTTCAGCTATGTTCCTGAAGCTAAGCCACAAGAAGCAGATCCTAATGAC 477
Query 448 ATATACCAACAATTCGAGATCCATCAACGCCGATCATCATCTCGCTATTACTCTGCCACT 507
||||| || |||||| ||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 478 ATATATCAGCAATTCCAGATCCATCAAAAACGATCATCATCTCGCTGTTACACTGCCACT 537
Query 508 TCTGTTGCTTCTGATGGTG-TACCACCAAA-TTACCTTAAGAGGAAAG-ATTGGTGGGTC 564
||||||||| || | || | |||||||||| || | | |||| |||| ||||| ||
Sbjct 538 TCTGTTGCTCCTAACGG-GATACCACCAAAGTTTC-TAAAGAC-AAAGTATTGGAACGTT 594
Query 565 -AGCTACTCGACTTCGCACGACTTTGGTCTAAGAGATGATGCAAAAGGGATTAACACAAA 623
|| || ||||| || | ||||||||||||||||||||||||||||| ||| |||| |
Sbjct 595 GAG-TATTCGACATCAAAAGACTTTGGTCTAAGAGATGATGCAAAAGGTATTTACACTGA 653
Query 624 GCTTCGCTTAGACTCAGAACTTACTAGTTTAGGT-AAGA---GTATTGAGATAGGGAAAT 679
| |||| || || || ||| ||| | | || || | || ||| | |||| ||||
Sbjct 654 GATTCG-TT---CTGAG--CTTCCTAATG-ATGTGAATACAAGTGTTGTGGTAGGAAAAT 706
Query 680 GGTATGTTCCTTTCATATTTGTGATGGAAGGAGATGTAAAAGATCAGATGAACAAATCGA 739
||||||| |||||||||||||||| ||||||| ||| ||| |||||| | || | || |
Sbjct 707 GGTATGTCCCTTTCATATTTGTGAAGGAAGGAAATGCAAAGGATCAGCTTAAGAGCTCAA 766
Query 740 CGTT-TTACAGCGTGACACTTCAACAAA-GATGGGAAGAAGTTTTCTTCT-GCGAAAACA 796
| || ||||||| ||| ||| | ||| |||||||||| |||| |||| | ||||||
Sbjct 767 C-TTATTACAGCATGATTCTT-ATTAAAAGATGGGAAGAGGTTTA-TTCTTGTGAAAACG 823
Query 797 T-TGGCAATGAACATTTTGAGGTTGTAGTTGATGTTGATGTAGAAACAGAA-TCGGTGAA 854
| || ||| | || ||||||||| ||||||| || ||||||||| | | ||||
Sbjct 824 CGTAT-AACGAAAACCGCGAAGTTGTAGTTAATGTTGAAGTGGAAACAGAAGTTG-TGAA 881
Query 855 GCTTGAGGGACAAGAAACTAATTTGAGAGAGG-ATTCAG-GTG-ATGGAGTTGT--TTGG 909
|||||| |||||||| | | | || | | | || ||| ||| | || |||
Sbjct 882 GCTTGAAGGACAAGAGA-T--TGGGAAAAATACAAAAAGTGTGGATGAAAATGGGGTTG- 937
Query 910 TTTAGTGTCTTAAGGGATGAGAAAGACGACAAGAAGATAGGTCTTG-GATCTGTGGTCGT 968
||| | || || || || | ||| | | || ||||||| ||| |||||| |||| |
Sbjct 938 TTT-G-GT-TTGCGGT-TGC-A--GAC-A-A-GAGGATAGGT-TTGAGATCTGCGGTCAT 986
Query 969 AGAGAGGATGAAATGGGAAGAGGAAAGGTTTGGATGGTTAAA-CGAAGCAGGCGAAAGAT 1027
||||| ||||||||||||||||| || ||||| ||| ||| |||| | | |||| ||
Sbjct 987 GGAGAGAATGAAATGGGAAGAGGAGAGATTTGGGTGGA-AAAGCGAACC-G-CGAA-GAG 1042
Query 1028 CTAACA-TTAAGAGATCAGAGAGATTTGA---AGGCGGTTCATCGCATTGGAAGAGTTAT 1083
| | |||||| ||| ||||||||||| ||||||||| | ||||||||||||||
Sbjct 1043 C-AGTGGTTAAGAAATCTGAGAGATTTGATGGAGGCGGTTC---GAATTGGAAGAGTTAT 1098
Query 1084 CGATGTTATGTATTGATAGAGAGCTTTGAATTGACGAGAATGGATGGGAGTTTGGTGTTG 1143
|||||||||| ||| | ||||||||||| |||| ||||| ||||| |||||| || |||
Sbjct 1099 AGATGTTATGTGTTGGTGGAGAGCTTTGAGTTGAGGAGAAAGGATGAGAGTTTAGTATTG 1158
Query 1144 ACATATGAGTTTAGGCATGTTGATAAGCTAAAGAGC-AAGTGGGA 1187
||| ||| |||| |||||||||||| | | || | ||||||||
Sbjct 1159 TCATTTGATTTTAAACATGTTGATAAGTTGA-GAACCAAGTGGGA 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50131635855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5