BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13500.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312360 jgi|Araly1|312360|fgenesh1_pm.C_scaffold_1001140 1349 0.0
Ahg911139 jgi|Araly1|911139|Al_scaffold_0001_1393 1321 0.0
Ahg471510 jgi|Araly1|471510|fgenesh2_kg.1__1464__AT1G13480.1 472 4e-132
> Ahg312360 jgi|Araly1|312360|fgenesh1_pm.C_scaffold_1001140
Length=2319
Score = 1349 bits (730), Expect = 0.0
Identities = 1024/1163 (88%), Gaps = 32/1163 (3%)
Strand=Plus/Plus
Query 1 ATGTATGTGACAAAGCGTTTGTCTGAATACAAGAGAAACCCATCGGAGCTAACATTGCTT 60
|||||||| |||||||||||||| |||||| |||||||||| |||||||| || || |||
Sbjct 1 ATGTATGTAACAAAGCGTTTGTCCGAATACCAGAGAAACCCGTCGGAGCTTACTTTACTT 60
Query 61 CCGACAGAAGGTCCGAACTCCGGAGTATTGGTCATTCAAGACGAAGAATCACGGCCTACA 120
|| || |||||||| |||||||| |||||||| ||||||||| ||||||||| ||||||
Sbjct 61 CCAACGGAAGGTCCAAACTCCGGCGTATTGGTGATTCAAGACCAAGAATCACAGCCTAC- 119
Query 121 TTGAAATGCTGCTTT-GTCAATTCCTTTGATTGGGAACTCAATGGTTTGCCGTTTCCTCA 179
|||||| ||| || || | ||||| ||| || || ||||||||||||||||||||
Sbjct 120 -----ATGCTGTTTTGGT-AAATGCTTTGGTTGTGATCTAAATGGTTTGCCGTTTCCTCA 173
Query 180 GAACACAAGAGTCATCGTCAAACGCCAAATCGGA-AC-----TG-C-----TCTCTAT-C 226
|||||||||||||| ||| ||| |||||||||| || || | | ||| | |
Sbjct 174 GAACACAAGAGTCACCGTTAAATACCAAATCGGACACGGAGATGACAGAATTGTCT-TGC 232
Query 227 TTGACCCGGTCGCGTTCATCCCCGTTCTTCATCAGCCACCTTCCTCCAATCTTTACTATG 286
||||| |||| ||||||||||| || ||||||||||| ||||| |||||||||||||| |
Sbjct 233 TTGACTCGGTTGCGTTCATCCCTGTCCTTCATCAGCCTCCTTCTTCCAATCTTTACTACG 292
Query 287 TTATAAGGGGAAGCGGGAAACACACAGGTGAAGCATGTGTTAGTGCAAAAGAAGGGGACA 346
|||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 293 TTATAAGGCGAAGAGGGAAACACGCAGGGGAAGCATGTGTTAGTGCAAAAGAAGGGGACA 352
Query 347 GAGCTTCTTGTTGCTTTTGCTTTACTTATATCCCTGAGGCTGTTCCAAGGCCTCTGGATC 406
||| |||||||||| |||| ||||||||| || || | ||| ||||| ||||| ||||
Sbjct 353 GAGTTTCTTGTTGCCTTTGTTTTACTTATGTCTCTAATGCTACGCCAAGACCTCTTGATC 412
Query 407 CTTTTGACATAAACCAACAATTTGAGATCCATCAAGGAAGATCATCAACCAAG-AAGTTC 465
|||| |||||| |||||||||||||||| |||||| || ||||||||||| | ||||||
Sbjct 413 CTTTCGACATATACCAACAATTTGAGATACATCAAAGAGGATCATCAACC-CGCAAGTTC 471
Query 466 TTTGCTACATCTGTTGCTTCAGATGGGATACCACCTCAGTTCCTGACGAGAAAAGGTTGG 525
|| |||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||
Sbjct 472 TTCGCTACATCAGTTGCTTCAGATGGAATACCACCTCGGTTCCTGAGGAGAAAAGGTTGG 531
Query 526 TCGGTTATTTTCTCGGCCCCCGAAGTCGAAGACTATGGTTTGATTGATGATGCAAAAGGC 585
||||| |||||| || || | |||||||||||||||||||||||||||| ||
Sbjct 532 ACGGTTCCTTTCTCTGCTTCC-----C-AAGACTATGGTTTGATTGATGATGCAAAGGGT 585
Query 586 ATAGTTGACGCAAAGCTGCGCTATGAGCTTCCTGATTTAGATAACAGCGTTGTAGTTGGG 645
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 586 GTAGTTGACGCAAAGCTGCGCTATGAGCTTCCTGATTTCTATAAGAGCGTTGTAGTTGGG 645
Query 646 AAATGGTATGTTCCGTTCTTGTTTGTTAAGGAAGGTGATGCAAAAGATCAGATGTATAAG 705
||||||||||| |||||||||||||| |||||||| ||||| |||||||||||| | ||
Sbjct 646 AAATGGTATGTCCCGTTCTTGTTTGTAAAGGAAGGAGATGCTAAAGATCAGATGAAGAAA 705
Query 706 TCAATGTATTATAGTATGACGCTTCAGCAAAGATTTGAAGAGGTTTTCTTCTGTGAAAAC 765
|| |||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 706 TCGATGTATTACAGCATGACACTTCACCAAAGATTTGAAGAGGTTTTCTTCTGTGAAAAC 765
Query 766 GTTGGCAACAATAAACGTTTTGAGGTTGTAGTTGATGTGGAGGTAGAAACAGAAGTGGTC 825
|||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 766 GTTGACAACGATAAAAATTGCGAGGTTGTAGTTGATGTGGAGGTAGAAACAGAAGTGGTT 825
Query 826 AAGCTTGAAGGAGAGAGGATTGCAAGAGAGACACAAGGTGTGAACTCAGATGGAGTTGTG 885
|||||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 826 AAGCTTGAAGGAGACAAGATTGCAAGAGCGACAAAAGGTGTGAACTCAGATGGAGTTGTG 885
Query 886 TGGTTTAATGCCTCAGGGAATGAGAAGATAGGTCTTGGGTCTGTTGTCTTAGAGAGGATG 945
||||||| || |||||||| ||||||||| |||||||||||||| |||||||||||||||
Sbjct 886 TGGTTTAGTGTCTCAGGGACTGAGAAGATTGGTCTTGGGTCTGTGGTCTTAGAGAGGATG 945
Query 946 AAATGGGAAGAGGAGAGGTTTGGGTGGTTAAACAAAGGCTATGAACAAAGGTCTAGCATT 1005
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 946 AAATGGGAAGAGGAGAGGTTTGGGTGGTTAAACAAAGGCGATGAACTAAGGTCTAGCATT 1005
Query 1006 AAGAGAACTGA-AAGATTTGAAGGCGGTGGACCATATTGGAAGAGTTATAGATGCTATGT 1064
||||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1006 AAGAGAATTGAGAA-ATTTGAAGGCGGTGGACCACATTGGAAGAGTTATAGATGCTATGT 1064
Query 1065 ATTGGTAGAGACCTTTGAATTGAAGAGAACTGATGGGAGTTTGGTATTGACATATGAGTT 1124
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1065 ACTGGTAGAGACCTTTGAATTGAAGAGAACTGATGGGAGTTTGGTATTGACGTATGAGTT 1124
Query 1125 TAAACATGTTGATAAGTTGAAGA 1147
|| ||||||||||||||||||||
Sbjct 1125 TAGACATGTTGATAAGTTGAAGA 1147
Score = 375 bits (203), Expect = 3e-103
Identities = 717/956 (75%), Gaps = 71/956 (7%)
Strand=Plus/Plus
Query 240 GTTCATCCCCGTTCTTCATCAGCCACCTTCCTCCAATCTTTACTATGTTA-TAAGGGGAA 298
|||||| || |||||| ||||||| || ||||| | ||| ||||| | ||| ||
Sbjct 1401 GTTCATTCCGGTTCTTGATCAGCCTTATTATTCCAACCGTTATTATGTCATTAA-ACGAC 1459
Query 299 GCGGGAAACACA-CAGGTGAAGCATGTGTTAGTGCAAAAGAAGGGGACAGAGCT-TCTTG 356
| ||||| || | |||| | | | | | ||||||||||||| ||||||| | ||||
Sbjct 1460 GTGGGAAGCA-ATCAGGAGGATCTTCAGCGAGTGCAAAAGAAGAAGACAGAG-TCCCTTG 1517
Query 357 TTGCTTTTGCTTTA-CTTATATCCCTGAGGCTGTTCCA-AGGCCTCTGGATCCTTTTGAC 414
||||||||||| | | ||| | ||||| | | ||| | | | ||||||| ||||
Sbjct 1518 CTGCTTTTGCTTCAGC-TATGTTCCTGAAGTTAAACCACAAGAAGC-AGATCCTTATGAC 1575
Query 415 ATAAACCAACAATTTGAGATCCATCAAGGAA-GATCATCAACCAAG-AAGTTCT-TTGCT 471
|| | || ||||| ||||||||||| || |||||| | | | | || | |||
Sbjct 1576 ATTTATCAGCAATTCCAGATCCATCAA-AAACAATCATC-ATCTCGCTA-TTATACTGCC 1632
Query 472 ACATCTGTTGCTTCAGATGGGATACCACCTCAGTTCCTGACGAGAAAAGGTTGGTCGGTT 531
|| || |||||| | |||||||||||||| ||||||| | ||| ||| | | | ||
Sbjct 1633 ACTTCGGTTGCTCCTGATGGGATACCACCAGAGTTCCTTAAGAG-AAA-G-T-ATTGG-- 1686
Query 532 ATTTTCTCGGCCCCCGAAGT-CGAAGACTATGGTTTGATTGATGATGCAAAAGGCATAGT 590
| | | || |||| | | |||||| ||||||||| |||||||||||||| | |
Sbjct 1687 ACCGT-TGGGTATTCGAATTCCCAAGACTTTGGTTTGATAGATGATGCAAAAGG--GA-T 1742
Query 591 TGACGCAAAGCTGCGCTAT-GAGCTT-CC--TGAT-TTAGATAAC-AGCGTTGTAGTTGG 644
|| | ||||| || | | |||||| || ||| | | || || || ||||| || ||
Sbjct 1743 CAACACTAAGCTTCG-TTTAGAGCTTCCCAACGATGTGA-AT-ACAAGTGTTGTGGTAGG 1799
Query 645 GAAATGGTATGTTCCGTTCTTGTTTGTTAAGGAAGGTGATGCAAAAGATCAGATGT-ATA 703
||||||||||||||| ||| | ||||| || ||| | |||||||| |||||||| | | |
Sbjct 1800 GAAATGGTATGTTCCTTTCATATTTGTGAAAGAAAGAGATGCAAATGATCAGAT-TAAGA 1858
Query 704 AGTCA-ATGTATTATAGTATGACGCTTCAGCAAAGATTTGAAGAGGTTTTCTTC-TGTGA 761
||| | ||||| || ||||||||| | ||||||| |||||||||| | || || ||
Sbjct 1859 TCTCAGCT-TATTACAGCATGACGCTTAAACAAAGATGGGAAGAGGTTTAC-TCATGCGA 1916
Query 762 AAACG-T--TGGCAAC-AATAAACGTTTTGAGGTTGTAGTTGATGTGGAGGTAGAAACAG 817
||||| | | |||| || ||| | ||||||||| ||||||| || ||||||||||
Sbjct 1917 AAACGTTAATAACAACGAA-AAAGGAGGAGAGGTTGTACTTGATGTTGACGTAGAAACAG 1975
Query 818 AAGTGGTCAAGCTTGAAGG---AGAGAGGATTGCAAGAGAGACACA-AGGT-GTGAACTC 872
||||||| |||||||| || ||| | ||| | ||||||||| | ||| ||| | |
Sbjct 1976 AAGTGGTGAAGCTTGAGGGACAAGAAACTATTTCTAGAGAGACA-AGTGGTGGTGGA-TT 2033
Query 873 AGATGGAGTTGT-GTGGTTTAATGCCT--CAG-GGA-ATGAGAAGATAGGTCTTGGGTCT 927
| | | ||| | ||| |||| | | ||| | | ||||||||||||||||||||
Sbjct 2034 TGTTTG-GTT-TAGTGTTTTAGGGGATGACAGACAAGACAAGAAGATAGGTCTTGGGTCT 2091
Query 928 GTTGTCTTAGAGAGGATGAAATGGGAAGAGGAGAGGTTTGGGTGGTTAAACAAAGGCTAT 987
|| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2092 GTGGTCGTGGAGAGGATGAAATGGGAAGAGGAAAGGTTTGGGTGGTTAAACAAAGGC--- 2148
Query 988 GAACAAAGGTCTAGCATTAAGAGAACTGAAAGATTTGAAGGCGGTGGACCATATTGGAAG 1047
| |||| |||| |||||||||| | || |||| ||||| ||| | | ||||||||
Sbjct 2149 G---AAAGATCTAACATTAAGAGATCAGAGGGATTCGAAGGTGGTTCAACGCATTGGAAG 2205
Query 1048 AGTTAT-AGATGCTATGTATTGGTAGAGACCTTTGAATTGAAGAGAACT-GATGGGAGTT 1105
|||||| | ||| ||||||||| |||||| ||| ||||||||||||| | ||||||||||
Sbjct 2206 AGTTATCA-ATGTTATGTATTGATAGAGAGCTTCGAATTGAAGAGAA-TGGATGGGAGTT 2263
Query 1106 TGGTATTGACATATGAGTTTAAACATGTTGATAAGTTGAAGAGCAAGTGGGATTGA 1161
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2264 TGGTGTTGACATATGAGTTTAGGCATGTTGATAAGTTGAAGAGCAAGTGGGATTGA 2319
> Ahg911139 jgi|Araly1|911139|Al_scaffold_0001_1393
Length=2049
Score = 1321 bits (715), Expect = 0.0
Identities = 902/992 (91%), Gaps = 14/992 (1%)
Strand=Plus/Plus
Query 174 TCCTCAGAACACAAGAGTCATC-GTCAAACGCCAAA-TCGGAACTGCTCTCTATCTTGAC 231
|||||||||||||| ||||| | |||| | |||| |||||| ||| ||| |||||||
Sbjct 1068 TCCTCAGAACACAAAAGTCA-CTGTCAGA-TTCAAAGTCGGAAAGGCTGTCTTTCTTGAC 1125
Query 232 CCGGTCGCGTTCATCCCCGTTCTTCATCAGCCACCTTCCTCCAATCTTTACTATGTTATA 291
||||||||||||||||||||| ||||||| |||||||| || ||||||||||| ||||||
Sbjct 1126 CCGGTCGCGTTCATCCCCGTTGTTCATCAACCACCTTCATCTAATCTTTACTACGTTATA 1185
Query 292 AGGGGAAGCGGGAAACACACAGGTGAAGCATGTGTTAGTGCAAAAGAAGGGGACAGAGCT 351
||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 AGGCAAAGCGGGAATCACATAGGTGAAGCATGTGTTAGTGCAAAAGAAGGGGACAGAGCT 1245
Query 352 TCTTGTTGCTTTTGCTTTACTTATATCCCTGAGGCTGTTCCAAGGCCTCTGGATCCTTTT 411
||||||||| | |||||||||||||| ||||| |||| ||||||||||| |||||||||
Sbjct 1246 TCTTGTTGCATGTGCTTTACTTATATGCCTGATGCTGAACCAAGGCCTCTAGATCCTTTT 1305
Query 412 GACATAAACCAACAATTTGAGATCCATCAAGGAAGATCATCAACCAAGAAGTTCTTTGCT 471
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 1306 GACATAAACCAACAATTTGAGATCCATCAAAGTGGATCATCAACCCAGAAGTTCTTTGCT 1365
Query 472 ACATCTGTTGCTTCAGATGGGATACCACCTCAGTTCCTGACGAGAAAAGGTT-GGTCGGT 530
||||||||||||||||| || |||||||||||||||||||||| |||||||| ||| |||
Sbjct 1366 ACATCTGTTGCTTCAGACGGAATACCACCTCAGTTCCTGACGAAAAAAGGTTGGGT-GGT 1424
Query 531 TATTTTCTCGGCCCCCGAAGTCGAAGACTATGGTTTGATTGATGATGCAAAAGGCATAGT 590
||||| || | || | ||||||| ||| |||||||||||||||||| || |||||
Sbjct 1425 TATTTCCT-TG---CC-TA-TCGAAGAAAATGCTTTGATTGATGATGCAAAGGGAATAGT 1478
Query 591 TGACGCAAAGCTGCGCTATGAGCTTCCTGATTTAGATAACAGCGTTGTAGTTGGGAAATG 650
|||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 1479 TGACGCAAAGCTGCGCTATGAGTTTCCTGATTTCGATAAGAGCGTTGTAGTTGGGAAATG 1538
Query 651 GTATGTTCCGTTCTTGTTTGTTAAGGAAGGTGATGCAAAAGATCAGATGTATAAGTCAAT 710
||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 1539 GTATGTTCCCTTCTTATTTGTTAAGGATGGTGATGCAAAAGATCAGATGAATAAATCAAT 1598
Query 711 GTATTATAGTATGACGCTTCAGCAAAGATTTGAAGAGGTTTTCTTCTGTGAAAACGTTGG 770
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 GTATTATAGTATGACGCTTCAGCAAAGATTTGAAGAGGTTTTCTTCTGTGAAAACGTTGA 1658
Query 771 CAACAATAAACGTTTTGAGGTTGTAGTTGATGTGGAGGTAGAAACAGAAGTGGTCAAGCT 830
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 CAACAATAAATATCGTGAGGTTGTAGTTGATGTGGAGGTAGAAACAGAAGTGGTCAAGCT 1718
Query 831 TGAAGGAGAGAGGATTGCAAGAGAGACACAAGGTGTGAACTCAGATGGAGTTGTGTGGTT 890
||||||||| | |||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 1719 TGAAGGAGACAAGATTGCAAGAGAGATAAAAGGTGTGAATTCAGATGGAGTTGTGTGGTT 1778
Query 891 TAATGCCTCAGGGAATGAGAAGATAGGTCTTGGGTCTGTTGTCTTAGAGAGGATGAAATG 950
|| || ||||| || ||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1779 TAGTGTCTCAGCGACTGATAAGATTGGTCTTGGGTCTGTGGTCTTGGAGAGGATGAAATG 1838
Query 951 GGAAGAGGAGAGGTTTGGGTGGTTAAACAAAGGCTATGAACAAAGGTCTAGCATTAAGAG 1010
|||||||||||||||||| |||| ||||||||| |||||| ||||||||||||||||||
Sbjct 1839 GGAAGAGGAGAGGTTTGGTTGGTCGAACAAAGGCGATGAACTAAGGTCTAGCATTAAGAG 1898
Query 1011 AACTGA-AAGATTTGAAGGCGGTGGACCATATTGGAAGAGTTATAGATGCTATGTATTGG 1069
|||||| || |||||||| ||||||||| |||||||||||||||||||||||||| |||
Sbjct 1899 AACTGAGAA-ATTTGAAGACGGTGGACCGCATTGGAAGAGTTATAGATGCTATGTACTGG 1957
Query 1070 TAGAGACCTTTGAATTGAAGAGAACTGATGGGAGTTTGGTATTGACATATGAGTTTAAAC 1129
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1958 TAGAGAGCTTTGAATTGAAGAGAGCTGATGGGAGTTTGGTATTGACATATGAGTTTAAAC 2017
Query 1130 ATGTTGATAAGTTGAAGAGCAAGTGGGATTGA 1161
||||||||||||||||||||||||||||||||
Sbjct 2018 ATGTTGATAAGTTGAAGAGCAAGTGGGATTGA 2049
> Ahg471510 jgi|Araly1|471510|fgenesh2_kg.1__1464__AT1G13480.1
Length=1299
Score = 472 bits (255), Expect = 4e-132
Identities = 921/1223 (75%), Gaps = 124/1223 (10%)
Strand=Plus/Plus
Query 1 ATGTATGTGACAAAGCGTTTGTCTGAATACAAGAGAAACCCATCGGAGCT-AACATTGCT 59
|||||||| |||| |||||| || |||||| ||| ||| ||||||||||| || | ||||
Sbjct 28 ATGTATGTTACAAGGCGTTTATCGGAATACCAGAAAAAACCATCGGAGCTGAA-ACTGCT 86
Query 60 TCCGA-CAGAAGGTCCGAACTCCGGAGTATTGGTCATTCAAGACGAAGAATCAC-GGCCT 117
||| | | |||||||| ||||||||| || |||| ||||||||||||||||||| ||||
Sbjct 87 TCC-ACCGGAAGGTCCAAACTCCGGAATAATGGTGATTCAAGACGAAGAATCACAGGCC- 144
Query 118 ACATTGAAATGCTGCTTT-G-TCAATTCCTTTGATTGGG-A-ACTCAATGGTTTGCCGTT 173
|| | ||||||||| | || || || ||| ||| | ||| || || ||||||||
Sbjct 145 AC--T----TGCTGCTTTGGTTC--TTGCTATGA--GGGTAGACTTAAAGGCTTGCCGTT 194
Query 174 TCCTC---A---GAA-CACAA-G-AG-TCAT-C--GT-CA-AACGCCAA-ATCGGAACTG 217
||| | | ||| | ||| | || | || | || | | | || | | | ||
Sbjct 195 TCCACAAAACGTGAAGCTCAATGTAGCTTATACTAGTGGAGGAGGAGAACACCAG-AC-- 251
Query 218 CTCTCTATCTTGAC-CCGGTCGCGTTCATCCCCGTTCTTCATCAGCCACCT-TCCTCCAA 275
| | ||||| || || || | ||||||||| |||||| |||||||| | || || ||
Sbjct 252 AACAC-ATCTT-ACTCCAGTTGTGTTCATCCCTGTTCTTGATCAGCCA-TTGTCTTCAAA 308
Query 276 TCTTTACTATGTTATA-AGGGGAAGCGGGAAACACACAGGTG-AAGCATGTGTTAGTGCA 333
||||||||||||||| | || | ||||| || || || | |||||| | ||||||
Sbjct 309 CCTTTACTATGTTATACAAAGG-CGTGGGAAGCATACTGG-GAAAGCATCTCCAAGTGCA 366
Query 334 AAAGAAGG-GGACAGAGCTTCTTGTTGCTTTTGCTTTA-CTTATATCCCTGAGGCT--GT 389
|||| ||| ||| |||| ||| | ||||||||||||| | ||| | ||||| ||| |
Sbjct 367 AAAG-AGGAGGAGAGAGTTTCAAGCTGCTTTTGCTTTAGC-TATGTTCCTGAAGCTAAG- 423
Query 390 TC-CAAGGCCTCTGGATCCTTTTGACATAAACCAACAATTTGAGATCCATCAAGGAAGAT 448
| ||| | || ||||||| ||||||| |||||||||| |||||||||||| | |||
Sbjct 424 CCTCAA-GAAGCT-GATCCTTATGACATATACCAACAATTCGAGATCCATCAACGTCGAT 481
Query 449 CATCAACCAAG-AAGTT-CTTTGCTACATCTGTTGCTTCAGATGG-GATACCACCTCAG- 504
|||| | | | | || || ||| || ||||||||||| ||||| | | ||| | |||
Sbjct 482 CATC-ATCTCGCTA-TTACTCTGCCACTTCTGTTGCTTCTGATGGTG-TGCCA-C-CAGA 536
Query 505 TT-CCTGACGAGAAAAGGTTGGTCGGTTATTTTCTCGGCCCCCGAAGTCGAAGACTATGG 563
|| ||| | |||||||| ||||| ||| | || ||| | | | | | | |||| |||
Sbjct 537 TTACCTTAAGAGAAAAGATTGGTGGGTCAGTTACTC-GACTTC---G-C-ACGACTTTGG 590
Query 564 TTTGATTGATGATGCAAAAGGCATAGTTGACGCAAAG-CTGCGC-T--A-T--GAGCTTC 616
| | | |||||||| ||||| | || || ||||| || ||| | | | ||||||
Sbjct 591 TCTAAGAGATGATGCTAAAGG--GA-TTAACACAAAGCCT-CGCTTAGACTCAGAGCTTA 646
Query 617 CTGA-TTTAGATAACAGCGTTGTA-GTTGGGAAATGGTATGTTCCGTTCTTGTTTGTTAA 674
|| | ||||| ||| || | || | || ||||||||||||||||| ||| | ||||| |
Sbjct 647 CT-AGTTTAGGTAAGAGTGCTG-AGGTAGGGAAATGGTATGTTCCTTTCATATTTGTGAT 704
Query 675 GGAAGGTGATGCAAAAGATCAGATGTA-TAAGTCAATGTATTATAGTATGACGCTTCAGC 733
|||||| |||| ||||||||||||| | || |||| || ||| || |||| ||||| |
Sbjct 705 GGAAGGAGATGTAAAAGATCAGATGAAGCAA-TCAACGTTTTACAGCGTGACACTTCAAC 763
Query 734 AAAGATTTGAAGAGGTTTTCTTCTGTGAAAACGTTGGCAACAATAAACGTTTTGAGGTTG 793
|||||| ||||| ||||||||||| |||||| || | |||| ||| |||||||||||
Sbjct 764 AAAGATGGGAAGAAGTTTTCTTCTGCGAAAACATT---AGCAATGAACATTTTGAGGTTG 820
Query 794 TAGTTGATGTGGAGGTAGAAACAGAAGTGGTCAAGCTTGAAGG---AGAGA-GGA-TTGC 848
|||||||||| || |||||||||||| |||| |||||||| || ||| | | |||
Sbjct 821 TAGTTGATGTTGATGTAGAAACAGAATTGGTGAAGCTTGAGGGACAAGAAACTCAGTTG- 879
Query 849 AAGAGAGACACAAGGTG-TGAACTCAGATGGAGTTGT-GTGGT-TTAATGCCTCAG---G 902
|||||| || |||||| || | | | | | ||| | || || |||| | | || |
Sbjct 880 -AGAGAGGCAAAAGGTGATGGAGT-TGTTTG-GTT-TAGT-GTATTAAGGGATGAGAAAG 934
Query 903 GA-ATGAGAAGATAGGTCTTGGGTCTGTTGTCTTAGAGAGGATGAAATGGGAAGAGGAGA 961
| | |||||||||||||||||||||| ||| | ||||||||||||||||||||||| |
Sbjct 935 AAGACAAGAAGATAGGTCTTGGGTCTGTGGTCGTGGAGAGGATGAAATGGGAAGAGGAAA 994
Query 962 GGTTTGGGTGGTTAAACAAAGGCTATGAACAAAGGTCTAGCATTAAGAGAA-CTGAAAGA 1020
|||||||||||||||||||||| | ||| | ||||||||| | || | || ||
Sbjct 995 AGTTTGGGTGGTTAAACAAAGGC---G---GAAGATTTAGCATTAA-AAAATCAGAGCGA 1047
Query 1021 TTTGAAGGCGGTGGACCATATTGGAAGAGTTAT-AGATGCTATGTATTGGTAGAGACCTT 1079
|||||||||||| | | |||||||||| ||| | ||| ||||||||| |||||| |||
Sbjct 1048 TTTGAAGGCGGTTCATCGCATTGGAAGAGCTATCA-ATGTTATGTATTGATAGAGAGCTT 1106
Query 1080 TGAATTGAAGAGAACT-GATGGGAGTTTGGTATTGACATATGAGTTTAAACATGTTGATA 1138
||| |||||||| | | |||||||| ||||| |||||||| ||||||| ||||||||||
Sbjct 1107 TGAGTTGAAGAGGA-TGGATGGGAGCTTGGTGTTGACATACGAGTTTAGGCATGTTGATA 1165
Query 1139 AGTTGAAGAGCAAGTGGGATTGA 1161
|||||||||||||||||||||||
Sbjct 1166 AGTTGAAGAGCAAGTGGGATTGA 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5