BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13520.1
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312360 jgi|Araly1|312360|fgenesh1_pm.C_scaffold_1001140 1777 0.0
Ahg471510 jgi|Araly1|471510|fgenesh2_kg.1__1464__AT1G13480.1 922 0.0
Ahg911139 jgi|Araly1|911139|Al_scaffold_0001_1393 255 4e-67
> Ahg312360 jgi|Araly1|312360|fgenesh1_pm.C_scaffold_1001140
Length=2319
Score = 1777 bits (962), Expect = 0.0
Identities = 1106/1176 (94%), Gaps = 8/1176 (1%)
Strand=Plus/Plus
Query 18 AATTCAAGATGTATGTTACAAGGCATCTCTCCGAATACCAGAGAAACTCGTCGGACTTGA 77
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1148 AATTCAAGATGTATGTTACAAGGCATCTCTCGGAATACCAGACAAACTCGTCGGACTTGA 1207
Query 78 CACGATCGTTGCCGGAAGGTCCAAACTCCGGCGTACTTGTGATTCAAGACGAAGAGTCAA 137
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1208 CACGATCATTGCCGGAAGGTCCAAACTCCGGAGTACTTGTGATTCAAGACGAAGACTCAA 1267
Query 138 AACCGACTTGTTGCTTTGGAAATTGCTACGATGGTGAACTCAAAGGCTTACCGTTCCCAC 197
| || |||||||||||||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct 1268 AGCCCACTTGTTGCTTTGGAACTTGCTACGATGGTGAACTCAAAGGATTACCATTCCCAC 1327
Query 198 AGAACGCAAAGCTGACTGTGACTTACAGAACCGGAACTGGTAATGACAGGCGCAGTTACC 257
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1328 AAAACGCAAAGCTGACTGTGACTTACAGAACCGGAACTGGTAAAGACAGGCGCAGTTACC 1387
Query 258 ATGACCAGGTTCTGTTCATTCCGGTTCTTGATCAGCCTTATTATTCGAACCGTTATTATG 317
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1388 ATGACCAAGTCCTGTTCATTCCGGTTCTTGATCAGCCTTATTATTCCAACCGTTATTATG 1447
Query 318 TCATTAAACGACGTGGGAAGCAATCAGGAGGAGCTTCGGCGAGTGCAAAGGAAGAAGACA 377
|||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 1448 TCATTAAACGACGTGGGAAGCAATCAGGAGGATCTTCAGCGAGTGCAAAAGAAGAAGACA 1507
Query 378 GAGTCCCCTGCTGCTTTTGCTTCAGCTATGTTCCTGAAGTTAAGCCACAAGAAGCAGATC 437
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1508 GAGTCCCTTGCTGCTTTTGCTTCAGCTATGTTCCTGAAGTTAAACCACAAGAAGCAGATC 1567
Query 438 CTTATGATATATATCAACAGTTCGAGGTCCATCAACGTA-AACCATCATCAGGCTATTAC 496
||||||| || ||||| || ||| || |||||||| | || ||||||| |||||||
Sbjct 1568 CTTATGACATTTATCAGCAATTCCAGATCCATCAA-AAACAATCATCATCTCGCTATTAT 1626
Query 497 ACTGCCACTTCAGTTGCTCCTAATGGGATACCACCAGAGTTCCTTAAGAGAAAGTACTGG 556
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1627 ACTGCCACTTCGGTTGCTCCTGATGGGATACCACCAGAGTTCCTTAAGAGAAAGTATTGG 1686
Query 557 ACCGTTGAGTATTCGAATTCCCAAGACTTTGGTTTGACAGATGATGCAAAAGGGATCAAC 616
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1687 ACCGTTGGGTATTCGAATTCCCAAGACTTTGGTTTGATAGATGATGCAAAAGGGATCAAC 1746
Query 617 ACTACGCTTCGTTCCA-AGCTTCCCAACGATATGAATACAAGTGTTGTGGTAGGGAAATG 675
|||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1747 ACTAAGCTTCGTT-TAGAGCTTCCCAACGATGTGAATACAAGTGTTGTGGTAGGGAAATG 1805
Query 676 GTATGTTCCTTTCATATTTGTGAAAGAAAGAGATGCAAAAGATCAGATTAAGAGCTCACC 735
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 1806 GTATGTTCCTTTCATATTTGTGAAAGAAAGAGATGCAAATGATCAGATTAAGATCTCAGC 1865
Query 736 TTATTACAGCATGACGCTTAAACAAAGATGGGAAGAGGTTTACTCATGCGTAAACGTTAA 795
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1866 TTATTACAGCATGACGCTTAAACAAAGATGGGAAGAGGTTTACTCATGCGAAAACGTTAA 1925
Query 796 CT-ACAACCAAAAAGGAGGAGAGGTTGTAGTTGATGTTGACGTAGAAACACAAGTGGTAA 854
| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 1926 -TAACAACGAAAAAGGAGGAGAGGTTGTACTTGATGTTGACGTAGAAACAGAAGTGGTGA 1984
Query 855 AGCTTGAGGGACAAGAAACTATTTCTAGAGAGACAAGTGGTGGTGGATTTGTTTGGTTTA 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1985 AGCTTGAGGGACAAGAAACTATTTCTAGAGAGACAAGTGGTGGTGGATTTGTTTGGTTTA 2044
Query 915 GTGTTTTAGGGGATGAGAGACAAGACAAGAAGATAGGTCTTGGGTCTGTTGTCGTGGAGA 974
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2045 GTGTTTTAGGGGATGACAGACAAGACAAGAAGATAGGTCTTGGGTCTGTGGTCGTGGAGA 2104
Query 975 GGATGAAATGGGAAGAGGAAAGGTTCGGATGGTTAAACAACGGTGAAAGATCTAACATTA 1034
||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||
Sbjct 2105 GGATGAAATGGGAAGAGGAAAGGTTTGGGTGGTTAAACAAAGGCGAAAGATCTAACATTA 2164
Query 1035 AGAGATCAGAGAGATTTGAAGGCGGGTCATCGCATTGGAAGAGTTATCGATGTT-TGGTA 1093
||||||||||| |||| ||||| || ||| |||||||||||||||||| ||||| || ||
Sbjct 2165 AGAGATCAGAGGGATTCGAAGGTGGTTCAACGCATTGGAAGAGTTATCAATGTTATG-TA 2223
Query 1094 TTGATAGAGAGCTTCGAATTGAAGAGAATGGATGGGAGTTTGGTGTTGACATATGAGTTT 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2224 TTGATAGAGAGCTTCGAATTGAAGAGAATGGATGGGAGTTTGGTGTTGACATATGAGTTT 2283
Query 1154 ACGCATGTTGATAAGTTAAAGAGCAAGTGGGATTGA 1189
| ||||||||||||||| ||||||||||||||||||
Sbjct 2284 AGGCATGTTGATAAGTTGAAGAGCAAGTGGGATTGA 2319
> Ahg471510 jgi|Araly1|471510|fgenesh2_kg.1__1464__AT1G13480.1
Length=1299
Score = 922 bits (499), Expect = 0.0
Identities = 1032/1279 (81%), Gaps = 78/1279 (6%)
Strand=Plus/Plus
Query 23 AAGATGTATGTTACAAGGCATCTCTCCGAATACCAG-AGAAACTCGTCGGA-CTTGACAC 80
||||||||||||||||||| | | || ||||||||| | |||| | ||||| | ||| ||
Sbjct 25 AAGATGTATGTTACAAGGCGTTTATCGGAATACCAGAAAAAAC-CATCGGAGC-TGAAAC 82
Query 81 GATCG-TT--GCCGGAAGGTCCAAACTCCGGCGTACTTGTGATTCAAGACGAAGAGTCA- 136
| | || |||||||||||||||||||| || | ||||||||||||||||| |||
Sbjct 83 --T-GCTTCCACCGGAAGGTCCAAACTCCGGAATAATGGTGATTCAAGACGAAGAATCAC 139
Query 137 AAACCGACTTGTTGCTTTGGAAATTGCTACGATGGTGA-ACTCAAAGGCTTACCGTTCCC 195
| || ||||| |||||||| |||||| || ||| | ||| |||||||| ||||| ||
Sbjct 140 AGGCC-ACTTGCTGCTTTGGTTCTTGCTATGAGGGT-AGACTTAAAGGCTTGCCGTTTCC 197
Query 196 ACAGAACGCAAAGCTGACTGTGA-CTTACAGAACCGGA--ACTG-GTA-A--TGACAGGC 248
||| |||| ||||| | ||| | |||| | | ||| | | | | | |||| |
Sbjct 198 ACAAAACGTGAAGCTCAATGT-AGCTTATACTAGTGGAGGA-GGAGAACACCAGACA-AC 254
Query 249 GCA-GTTACCATGACCAGGTTCTGTTCATTCCGGTTCTTGATCAGCC-TTATTATTCGAA 306
|| ||| | | ||| ||| ||||||| || |||||||||||||| || | ||| ||
Sbjct 255 ACATCTTA-C-T--CCA-GTTGTGTTCATCCCTGTTCTTGATCAGCCATT-GTCTTCAAA 308
Query 307 CCGTTATTATGTCATTA-AACGACGTGGGAAGCAAT-C-AGGAGGAGCTTCGGCGAGTGC 363
|| ||| ||||| | || || | |||||||||| || | ||| ||| || | |||||
Sbjct 309 CCTTTACTATGTTA-TACAAAGGCGTGGGAAGC-ATACTGGGA-AAGCATCTCCAAGTGC 365
Query 364 AAAGGAAGAAGACAGAGTCCCCTGCTGCTTTTGCTTCAGCTATGTTCCTGAAGTTAAGCC 423
||| || || || ||||| | ||||||||||||| |||||||||||||||| ||||||
Sbjct 366 AAAAGAGGAGGAGAGAGTTTCAAGCTGCTTTTGCTTTAGCTATGTTCCTGAAGCTAAGCC 425
Query 424 ACAAGAAGCAGATCCTTATGATATATATCAACAGTTCGAGGTCCATCAACGTAAACCATC 483
|||||||| ||||||||||| ||||| ||||| |||||| ||||||||||| | ||||
Sbjct 426 TCAAGAAGCTGATCCTTATGACATATACCAACAATTCGAGATCCATCAACGTCGATCATC 485
Query 484 ATCAGGCTATTACACTGCCACTTCAGTTGCTCCTAATGG-GATACCACCAGAGTT-CCTT 541
||| |||||||| |||||||||| |||||| || |||| | | |||||||| || ||||
Sbjct 486 ATCTCGCTATTACTCTGCCACTTCTGTTGCTTCTGATGGTG-TGCCACCAGA-TTACCTT 543
Query 542 AAGAG-AAAGTACTGGACCGTTGAG-TATTCGAATTCCCAAGACTTTGGTTTGACAGATG 599
||||| |||| | ||| | | || || |||| ||| || ||||||||| | | |||||
Sbjct 544 AAGAGAAAAG-ATTGG-TGGGTCAGTTACTCGACTTCGCACGACTTTGGTCTAAGAGATG 601
Query 600 ATGCAAAAGGGATCAACACTACGCTTCG-TT---C-CA-AGCTTCCCAACGATATGA-AT 652
|||| |||||||| ||||| | || ||| || | || ||||| | | | | | | |
Sbjct 602 ATGCTAAAGGGATTAACACAAAGCCTCGCTTAGACTCAGAGCTT-ACTA-G-T-TTAGGT 657
Query 653 ACA-AGTGTTGTGGTAGGGAAATGGTATGTTCCTTTCATATTTGTGAAAGAAAGAGATGC 711
| | |||| || ||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 658 A-AGAGTGCTGAGGTAGGGAAATGGTATGTTCCTTTCATATTTGTGATGGAAGGAGATGT 716
Query 712 AAAAGATCAGATTAAG-AGCTC-ACCTTATTACAGCATGACGCTTAAACAAAGATGGGAA 769
|||||||||||| ||| | || || || ||||||| |||| ||| ||||||||||||||
Sbjct 717 AAAAGATCAGATGAAGCA-ATCAACGTT-TTACAGCGTGACACTTCAACAAAGATGGGAA 774
Query 770 GAGGTTTAC-TCATGCGTAAACGTTAACTACAACCAAAAAGGAGGAGAGGTTGTAGTTGA 828
|| |||| | || |||| |||| || | ||| || | ||||||||||||||
Sbjct 775 GAAGTTTTCTTC-TGCGAAAACATT-A--GCAA-TGAACA--TTTTGAGGTTGTAGTTGA 827
Query 829 TGTTGACGTAGAAACACAAGTGGTAAAGCTTGAGGGACAAGAAACT-ATTTCTAGAGAGA 887
|||||| ||||||||| || |||| ||||||||||||||||||||| | || ||||||
Sbjct 828 TGTTGATGTAGAAACAGAATTGGTGAAGCTTGAGGGACAAGAAACTCAGTT-GAGAGAGG 886
Query 888 CAAGTGGTGGTGGATTTGTTTGGTTTAGTGTTTTAGGGGATGAGAGACAAGACAAGAAGA 947
||| |||| |||| |||||||||||||||| ||| ||||||||| | ||||||||||||
Sbjct 887 CAAAAGGTGATGGAGTTGTTTGGTTTAGTGTATTAAGGGATGAGAAAGAAGACAAGAAGA 946
Query 948 TAGGTCTTGGGTCTGTTGTCGTGGAGAGGATGAAATGGGAAGAGGAAAGGTTCGGATGGT 1007
|||||||||||||||| ||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 947 TAGGTCTTGGGTCTGTGGTCGTGGAGAGGATGAAATGGGAAGAGGAAAAGTTTGGGTGGT 1006
Query 1008 TAAACAACGGTGAAAGATCTAACATTAAGAGATCAGAGAGATTTGAAGGCGGGTCATCGC 1067
||||||| || | ||||| || |||||| | ||||||| ||||||||||||| |||||||
Sbjct 1007 TAAACAAAGGCGGAAGATTTAGCATTAAAAAATCAGAGCGATTTGAAGGCGGTTCATCGC 1066
Query 1068 ATTGGAAGAGTTATCGATGTT-TGGTATTGATAGAGAGCTTCGAATTGAAGAGAATGGAT 1126
|||||||||| |||| ||||| || |||||||||||||||| || |||||||| ||||||
Sbjct 1067 ATTGGAAGAGCTATCAATGTTATG-TATTGATAGAGAGCTTTGAGTTGAAGAGGATGGAT 1125
Query 1127 GGGAGTTTGGTGTTGACATATGAGTTTACGCATGTTGATAAGTTAAAGAGCAAGTGGGAT 1186
||||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||
Sbjct 1126 GGGAGCTTGGTGTTGACATACGAGTTTAGGCATGTTGATAAGTTGAAGAGCAAGTGGGAT 1185
Query 1187 TGAGTTTTTTATTCATCTTTGTT-CAGTTTCTTTGTGTGTCATCTTTTGGTTCAATAATT 1245
||||||| || | ||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1186 TGAGTTTCTT-T-CATCTTTGTAACAGTTTCTTCGTGTGTCATCTTTTGGTTCAATAATC 1243
Query 1246 AATTTAATGAATAAGTTTT 1264
|||||||||||||||||||
Sbjct 1244 AATTTAATGAATAAGTTTT 1262
> Ahg911139 jgi|Araly1|911139|Al_scaffold_0001_1393
Length=2049
Score = 255 bits (138), Expect = 4e-67
Identities = 606/818 (74%), Gaps = 88/818 (11%)
Strand=Plus/Plus
Query 364 AAAGGAAGAAGACAGAGTCCCCTGCTGCTTTTGCTTCAGCTATGTTCCTGAAGTTAAGCC 423
||| || |||||||||||||||||||||||||||| || ||||||||||||| || ||
Sbjct 303 AAA-GAGGAAGACAGAGTCCCCTGCTGCTTTTGCT--AGTTATGTTCCTGAAGCCAAACC 359
Query 424 ACAAGAAGCAGATCCTTATGATATATATCAACAGTTCGAGG-TCCATCAAC-GTAAACCA 481
| || | | |||||||||||| || || ||||| ||| | |||||||| | ||||||
Sbjct 360 AAAACAGGTAGATCCTTATGACATGTACCAACAATTC-ATTATCCATCAAAAG-AAACCA 417
Query 482 TCATCAG-GCTATTAC-ACTGCCACTTCAGTTGCTCCTAATGG-GATACCACCA-GAGTT 537
|| || | |||||||| || || || || ||||| ||| | || | | |||||| | |||
Sbjct 418 TCCTC-GCGCTATTACTAC-GCGACATCTGTTGCGCCTGACGGAG-TCCCACCATG-GTT 473
Query 538 CCTTAAGAGAAAGTAC-TGGACCGTTGAGTATTCGAA-TTCCCAAGACTTTGGT-TTGAC 594
|||||||| ||| || ||||| ||||| || |||| |||| ||||||||| || |
Sbjct 474 CCTTAAGAAAAA-TAAGTGGACAGTTGAATACTCGAGGTTCC-AAGACTTTGAACTT-AG 530
Query 595 AGATGATGCAAAAGGGA-TCAACACT-ACGCTTCGTTCCAAGCTTCCCAACGATAT-GAA 651
||||||||||||||| | | ||||| | | ||||| || |||||| | | | |
Sbjct 531 AGATGATGCAAAAGG-ACTAAACACAGA-GTTTCGTACCGAGCTTCTTG--G-TCTTGG- 584
Query 652 TACAAGTGTTGTGGTAGGGAAATGGTATGTTCCTTTCATATTTGTGAAAGAAAGAGATGC 711
|| ||||||||||| ||||| ||||| || ||||| ||||||||||| |||||||| |
Sbjct 585 TATGAGTGTTGTGGTTGGGAAGTGGTACGTCCCTTTTATATTTGTGAAGGAAAGAGACGT 644
Query 712 AAAAGATCAGATTAAGAGCTC-ACCTTATTACAGCATGACGCTTAAACAAAGATGGGAAG 770
| | |||||||| ||||| || | | | ||||||||||| ||| |||||||||||||||
Sbjct 645 AGAGGATCAGATCAAGAGATCGATGT-ACTACAGCATGACTCTTGAACAAAGATGGGAAG 703
Query 771 AGGTTTACTC--ATGCGTAAACGTTAACTACAACCAAAAAGGAGGAGAGGTTGTAGTTGA 828
| |||| || ||| | || || ||| | | | |||| | | | | ||||||||||
Sbjct 704 AAGTTTTCTTTTATGAG-AA-CGATAA--A-AGCGAAAACCGTG-AT-G-TTGTAGTTGA 755
Query 829 TGTTGACGT-AGAAACACAAGTGGTAAAGCTTGAGGGACAAGAAACTATTTCTAGAGAGA 887
||| || || ||| || |||| || ||| |||| |||||||| | | | | | ||||
Sbjct 756 TGTGGA-GTTAGATACTGAAGTTGTTAAGGTTGATGGACAAGAGA-T-TG-C-A-AGAG- 808
Query 888 CAAGTGGTGGTGGATTTG--TTTGGTTTAGTGTTTTAGGGGATGAGAGACAAGACAAGAA 945
||| || | | || |||| ||| | |||| |||| || |||| | ||| ||
Sbjct 809 ---GTGTTGAAGCAAATGGGTTTG-TTT-G-GTTT--GGGGTTG-GAGA-A---CAA-AA 854
Query 946 GATAGGTCTTGGG-TCTGTTGTCGTGGAGAGGATGAAATGGGAAGAGGAAAGGTTCGGAT 1004
||| ||| || || || ||||| || |||||||||||||||||||| || || ||||| |
Sbjct 855 GATCGGT-TTAGGATCAGTTGTTGTTGAGAGGATGAAATGGGAAGAAGAGAGATTCGGGT 913
Query 1005 GGTTAAACAACGGTGA-AAG-ATC--T-AA---CA-TTAAGAGATCAGAGAGATTTGA-A 1054
|| | ||| || || ||| | | | || || || |||||| |||| || | |
Sbjct 914 GGACAGGCAAAGGCGACAAGGAGCGATCAATGACAGTTGAGAGATTGGAGAAATCA-ACA 972
Query 1055 GGCGGGTCATCGCATT-GGAAGAGTTATCGAT-GTT-TGGTATTGATAGAGAGCTTCGAA 1111
| || | | || || |||||||||||| || ||| || | | |||||||||||| |
Sbjct 973 GATGG-T-A--GCTTTTGGAAGAGTTATC-ATTGTTATGTTCT-GATAGAGAGCTTTGTC 1026
Query 1112 TTGAAGAGAATGGATGGGAGTTTGGTGTTGACATATGA 1149
||||||||||||||| ||||||||| || ||||||||
Sbjct 1027 TTGAAGAGAATGGATAAGAGTTTGGTCTTAACATATGA 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5