BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13540.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471513 jgi|Araly1|471513|fgenesh2_kg.1__1467__AT1G13540.1 1799 0.0
Ahg911139 jgi|Araly1|911139|Al_scaffold_0001_1393 994 0.0
> Ahg471513 jgi|Araly1|471513|fgenesh2_kg.1__1467__AT1G13540.1
Length=1249
Score = 1799 bits (974), Expect = 0.0
Identities = 1163/1255 (93%), Gaps = 10/1255 (1%)
Strand=Plus/Plus
Query 4 AAGTCACCTTGTCAGTTGCTGTTCTACAGAGTTGTTTACTCTATAATATAGGATCAAGTT 63
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AAGTCACCTTGTCAGTTGCTCTTCTACAGAGTTGTTTAGTCTATAATATAGGATCAAGTT 60
Query 64 TTTCTCCAAGTCCAAAACTCGATTTAGTGAAACAATGTACATCACAAGGAGTTTCTCAGA 123
| ||||||||||| ||||||||||||||| || |||||||||||||||| |||| || ||
Sbjct 61 TCTCTCCAAGTCCCAAACTCGATTTAGTG-AA-AATGTACATCACAAGGCGTTTGTCTGA 118
Query 124 GTACCGGAGGAATCCAGCAGAGCTAACACAGCCTCCTCCTGAGGGTCCAAATTCTGGAAT 183
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 119 GTATCGGAGGAATCCAGCAGAGCTAACACAGCCTCCTCCTGAGGGTCCCAACTCTGGAAT 178
Query 184 TTTGGTAATCCAAGACCAACACTCACGGACACGGGCTACATCTTGCTTCGGCTCGTGGTT 243
|||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||
Sbjct 179 TTTGGTAATCCAAGACCAACACTCACAGACACGGGTTACATGTTGCTTCAGCTCGTGGTT 238
Query 244 GGTTGTGGACTCTTCTCTAAGTGGTTTGCCATTGCCCCAAAATCTTAAGCTAGCAGTCAC 303
||| ||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 239 GGTGGTGGATTCTTCTCTACGTGGTTTGCCATTGCCGCAAAATCTTAAGCTAGCAGTCAC 298
Query 304 ATTCAATATTGGAGGTGATGACAGCACTCGTGACCCAGTTGTGTTCATTCCTGTTCTTGA 363
||||||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 299 ATTCAATATCGGAGGAGATGACAGTACTCGTGACCCAATTGTGTTCATTCCTGTTCTTGA 358
Query 364 TAAGCCTCTATCTTCAAACTGTTATTACGCTATTAAACGGCATGGGAAGCATTCAGGGGA 423
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 359 TAAGCCTCTATCTTCAAACTGTTATTACGCTATCAAACGACATGGGAAACATTCAGGAGA 418
Query 424 AGCGTCTGGAAGTGCAAAAGAGGACGATATAGTCTCCTGCTGCTTTTGCT-CTAGTTTTG 482
||||||||| ||||| || ||||| |||| |||||||||||||||||| | ||| |
Sbjct 419 AGCGTCTGGTAGTGCCAAGGAGGAAGATAAAGTCTCCTGCTGCTTTTG-TATTAGGCAAG 477
Query 483 TTCCTGAAGCCAAACCAAAACAGTTAGATCCTTTTGACATGTACCAACAATTCAAGATCC 542
|| ||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 478 TTGCTGAAGCTAAACCAAAACAGCTAGATCCTTTTGACATATACCAACAATTTGAGATCC 537
Query 543 ATCAAAAGGAGCCTTCCTCGCGTTGTTACTACGCAACATCTGTCGCTCCTGACGGGGTCC 602
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTCAAAAGAAGCCATCCTCGCGTTGTTACTACGCAACATCTGTCGCTCCTGACGGGGTCC 597
Query 603 CACCATGGTTTCTGAGGAAAAAAGAGTGGACGGTTGAATACTCGAGGTTCCAAGACTTTG 662
||||||||||||| | || ||| |||||||||||||||| || ||||| |||||||||||
Sbjct 598 CACCATGGTTTCTCAAGAGAAAGGAGTGGACGGTTGAATGCTTGAGGTCCCAAGACTTTG 657
Query 663 AACTGAGAGATGATGCAAAAGGACTCATCACAGAGCTTCGTACTGAGCTTCCTC-TTCTT 721
||||||||||||||||||||||||||| ||||||||||||| | ||||||| | ||||
Sbjct 658 AACTGAGAGATGATGCAAAAGGACTCAACACAGAGCTTCGTGCCAAGCTTCC-CGGTCTT 716
Query 722 GGTATGAGCACTGTGGTTGGGAAGTGGTATGTCCCTTTCATATTCGTGAAAGAAAGAGAG 781
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 717 GGTATGAGCACAGTGGTTGGGAAGTGGTATGTCCCTTTCATATTCGTGAAAGAACGAGAC 776
Query 782 GTAAAGGATCAGATCAAGAATTCGATGTATTACAGCATGACTCTTGAACAAAGA-TGGAA 840
| |||||||||| ||||||||||| ||||||||||||||||||| ||||||| | |||||
Sbjct 777 GCAAAGGATCAGGTCAAGAATTCGGTGTATTACAGCATGACTCTCGAACAAA-ATTGGAA 835
Query 841 AGAGCTTTTTTCTGATGAGAACGACAAAAGCGAGAACCGTGATGTTGTCGTTGATGTAGA 900
|||| |||| ||| |||||||||| ||| |||| |||||||||||||| |||||||||||
Sbjct 836 AGAGGTTTTCTCTTATGAGAACGATAAACGCGAAAACCGTGATGTTGTAGTTGATGTAGA 895
Query 901 AGTAGAAACAGAAGTTGTTAAGCTTGAGGGACAA-ATGATTGAAAGAGGTCTGGAAGCAA 959
| | |||||||||||||||||||||||||||||| | ||||| ||||||| | |||||||
Sbjct 896 AATTGAAACAGAAGTTGTTAAGCTTGAGGGACAAGA-GATTGCAAGAGGTGTTGAAGCAA 954
Query 960 ATGGGTTTGTCTGGTTTGGGGTTGGAGACAAAAAGATCGGTTTAGGATCAGTTGTTGTTG 1019
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 955 ATGGGTTTGTCTGGTTTGGGGTTGGAGAAAAAAAGATCGGTTTAGGATCGGTTGTTGTTG 1014
Query 1020 AGAGGATGAAATGGGAAGAAGAGAGATTCGGGTGGACAGGCAAAGGCGACAATGAGCGAT 1079
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1015 AGAGGATGAAATGGGAAGAAGAGAGATTTGGGTGGACAGGCAAAGGCGACAAGGAGCGAT 1074
Query 1080 CAATGACAGTTAAGAGATTGGAGAAATCAACAGATGGTAGCCTTTGGAAGCATTATCATT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1075 CAATGACAGTTAAGAGATTGGAGAAATCAACAGATGGTAGCCTTTGGAAGCGTTATCATT 1134
Query 1140 GTTATGTTCTGATAGAGAGCTTTGTCTTGAAGAGAATGGATGAGAGTTTGGTCTTAACAT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GTTATGTTCTGATAGAGAGCTTTGTCTTGAAGAGAATGGATGAGAGTTTGGTCTTAACAT 1194
Query 1200 ATGAGTTTACACATGTAGATAAGCTCAAAACCAAATGGGATTAAGCTTATCACGC 1254
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ATGAGTTTACACATGTCGATAAGCTCAAAACCAAATGGGATTAAGCTTATCACGC 1249
> Ahg911139 jgi|Araly1|911139|Al_scaffold_0001_1393
Length=2049
Score = 994 bits (538), Expect = 0.0
Identities = 709/790 (90%), Gaps = 18/790 (2%)
Strand=Plus/Plus
Query 422 GAAGCGTCTGGAAGTGCAAAAGAGGACGATATAGTCTCCTGCTGCTTTTGCTCTAGTTTT 481
|||||| ||| |||| |||||||| || | |||| ||||||||||||| |||||| |
Sbjct 285 GAAGCGCCTGCTAGTGGGAAAGAGGAAGACAGAGTCCCCTGCTGCTTTTG--CTAGTTAT 342
Query 482 GTTCCTGAAGCCAAACCAAAACAGTTAGATCCTTTTGACATGTACCAACAATTCAAGATC 541
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 343 GTTCCTGAAGCCAAACCAAAACAGGTAGATCCTTATGACATGTACCAACAATTCATTATC 402
Query 542 CATCAAAAGGAGCCTTCCTCGCGTTGTTACTACGCAACATCTGTCGCTCCTGACGGGGTC 601
||||||||| | || |||||||| | ||||||||| |||||||| || |||||||| |||
Sbjct 403 CATCAAAAGAAACCATCCTCGCGCTATTACTACGCGACATCTGTTGCGCCTGACGGAGTC 462
Query 602 CCACCATGGTTTCTGAGGAAAAA-AGAGTGGACGGTTGAATACTCGAGGTTCCAAGACTT 660
||||||||||| || | |||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 463 CCACCATGGTTCCTTAAGAAAAATA-AGTGGACAGTTGAATACTCGAGGTTCCAAGACTT 521
Query 661 TGAACTGAGAGATGATGCAAAAGGACTCATCACAGAGCTTCGTACTGAGCTTCCTCTTCT 720
|||||| |||||||||||||||||||| | ||||||| ||||||| ||||||| | |||
Sbjct 522 TGAACTTAGAGATGATGCAAAAGGACTAAACACAGAGTTTCGTACCGAGCTTCTTGGTCT 581
Query 721 TGGTATGAGCACTGTGGTTGGGAAGTGGTATGTCCCTTTCATATTCGTGAAAGAAAGAGA 780
||||||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct 582 TGGTATGAGTGTTGTGGTTGGGAAGTGGTACGTCCCTTTTATATTTGTGAAGGAAAGAGA 641
Query 781 GGTAAAGGATCAGATCAAGA-ATTCGATGTATTACAGCATGACTCTTGAACAAAGATGGA 839
||| ||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 642 CGTAGAGGATCAGATCAAGAGA-TCGATGTACTACAGCATGACTCTTGAACAAAGATGGG 700
Query 840 AAG-AGCTTTT-TTCTGATGAGAACGACAAAAGCGAGAACCGTGATGTTGTCGTTGATGT 897
||| || |||| || | |||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 701 AAGAAG-TTTTCTT-TTATGAGAACGATAAAAGCGAAAACCGTGATGTTGTAGTTGATGT 758
Query 898 AGAAG-TAGAAACAGAAGTTGTTAAGCTTGAGGGACAA-ATGATTGAAAGAGGTCTGGAA 955
| || |||| || |||||||||||| |||| |||||| | ||||| ||||||| | |||
Sbjct 759 -GGAGTTAGATACTGAAGTTGTTAAGGTTGATGGACAAGA-GATTGCAAGAGGTGTTGAA 816
Query 956 GCAAATGGGTTTGTCTGGTTTGGGGTTGGAG-ACAAAAAGATCGGTTTAGGATCAGTTGT 1014
|||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct 817 GCAAATGGGTTTGTTTGGTTTGGGGTTGGAGAAC-AAAAGATCGGTTTAGGATCAGTTGT 875
Query 1015 TGTTGAGAGGATGAAATGGGAAGAAGAGAGATTCGGGTGGACAGGCAAAGGCGACAATGA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 876 TGTTGAGAGGATGAAATGGGAAGAAGAGAGATTCGGGTGGACAGGCAAAGGCGACAAGGA 935
Query 1075 GCGATCAATGACAGTTAAGAGATTGGAGAAATCAACAGATGGTAGCCTTTGGAAGCA-TT 1133
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 936 GCGATCAATGACAGTTGAGAGATTGGAGAAATCAACAGATGGTAGCTTTTGGAAG-AGTT 994
Query 1134 ATCATTGTTATGTTCTGATAGAGAGCTTTGTCTTGAAGAGAATGGATGAGAGTTTGGTCT 1193
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 995 ATCATTGTTATGTTCTGATAGAGAGCTTTGTCTTGAAGAGAATGGATAAGAGTTTGGTCT 1054
Query 1194 TAACATATGA 1203
||||||||||
Sbjct 1055 TAACATATGA 1064
Score = 315 bits (170), Expect = 7e-85
Identities = 244/279 (87%), Gaps = 7/279 (3%)
Strand=Plus/Plus
Query 107 ACAAGGAGTTTCTCAGAGTACCGGAGGAATCCAGCAGAGCTAACACAGCCTCCTCCTGAG 166
|||||| |||| |||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 10 ACAAGGCGTTTGTCAGAGTACCAGAGAAATCCATCAGAGCTAACACAGCCTCCTCCTGAT 69
Query 167 GGTCCAAATTCTGGAATTTTGGTAATCCAAGACCAACACTCACGGACACGGGCTACAT-C 225
|||||||| |||||||||||||||||||||||||||||||||| |||| | ||| |
Sbjct 70 GGTCCAAACTCTGGAATTTTGGTAATCCAAGACCAACACTCACAAACACAT-C--CATGC 126
Query 226 TTGCTTCGGCTCGTGGTTGGTTGTGGACTCTTCTCTAAGTGGTTTGCCATTGCCCCAAAA 285
| ||||||||| ||| ||||| || ||||||| ||||||||||||||| ||||| |||||
Sbjct 127 T-GCTTCGGCTTGTGTTTGGTCGTCGACTCTTTTCTAAGTGGTTTGCCCTTGCCGCAAAA 185
Query 286 TCTTAAGCTAGCAGTCACATTCAATATTGGAGGTGATGACAGC-ACTCGTGACCCAGTTG 344
||||||||| |||| || ||||||| ||||| |||||| || ||| |||||||||||
Sbjct 186 TCTTAAGCTCGCAGCCAGATTCAATGCTGGAGAAGATGAC-GCTACTTGTGACCCAGTTC 244
Query 345 TGTTCATTCCTGTTCTTGATAAGCCTCTATCTTCAAACT 383
|||||||||||||||| ||||||||||||||||||||||
Sbjct 245 TGTTCATTCCTGTTCTCGATAAGCCTCTATCTTCAAACT 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5