BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13570.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471516 jgi|Araly1|471516|fgenesh2_kg.1__1470__AT1G13570.1 2324 0.0
> Ahg471516 jgi|Araly1|471516|fgenesh2_kg.1__1470__AT1G13570.1
Length=1564
Score = 2324 bits (1258), Expect = 0.0
Identities = 1419/1497 (95%), Gaps = 9/1497 (1%)
Strand=Plus/Plus
Query 6 GAGATTATGAAATTGACTTTTGGCCAAAACGCTAACTTTAATCGCAAAAGTAAGAAAATC 65
||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct 1 GAGATTATGAAATAGACTTTTGGCC-AAACGCTAACTATAATTGCAAAAGTAAGAAAATC 59
Query 66 TAGTAAAACAGATGCTGAGAGCAAAATCTGCGATCTTCTGCTATTTCCCCATTTGAAACT 125
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TAGTAAAAGAGATGATGAGAGCAAAATCTGCGATCTTCTGCTATTTCCCCATTTGAAACT 119
Query 126 CCACCGTTCAAGCCGGTCACTGCTCCAACGGACCGGCGGAACAAGGAGACAAAAAGATGG 185
||||| |||||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 120 TCACCGATCAAGCCGGTCACTGCTCCAGC-GAAC--CGGAACAAGGAGACAAAAAGATGG 176
Query 186 GTGAATCTCCAGATTTCATAAGCGATCTACCTCAAAGCATTATTGAGAATATCCTTACTC 245
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 177 GTGAATCTCCAGATTTCATAAGCGATCTTCCTCAAAGCATTATTGAGAATATACTTACTC 236
Query 246 GGCTTTCGATTAGAGATGCAATAAGAACAAGTGTATTATCTAGCAAATGGAGATATAAAT 305
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 GGCTTTCGATTAGAGATGCAATAAGAACAAGTGTGTTATCTAGCAAATGGAGATATAAAT 296
Query 306 GGTCTACACTCACTGATCTTGTCTTTGATGAGAAATGTGTTTCTCCTTCTAATGACCGTT 365
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 297 GGTCTACACTCACTGATCTTGTGTTTGATGAGAAATGTGTTTCTCCTGCTAATGACCGTT 356
Query 366 GTGTTGTTGAGACTAATCTTGTGAGATTCATTACTGGAGTGCTTCTCCTTCACCAAGGAC 425
| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 357 GCGTTGTTGAGACTAGTCTTGTGAGATTTATTACTGGAGTGCTTCTCCTTCACCAAGGAC 416
Query 426 CTATCCACAAGTTTCAGCTCTCTACTTCTTTCAAACAATGTCGTCCAGATATTGATCAGT 485
||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 417 CTATCCATAAGTTTCAGCTCTCTACTTCTTTCTTACAATGTCGTCCCGATATTGATCAGT 476
Query 486 GGTTGCTTTTTCTTTCGAGGAACGGGATTAAGGAGCTTGTTCTTAAGTTAGGTGAAGGAG 545
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct 477 GGTTGCTTTTTCTTTCGAGGAATGGGATTAAGGAGCTTGTTCTTGAGTTAGGAGAAGGAG 536
Query 546 AATTCAGGGTTCCTGCATGTCTCTTTAACTGTTTGAAATTGACCTGTTTGGAGTTATGTC 605
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 537 AATTCAGGGTTCCTTCATGTCTCTTTAACTGTTTGAAACTGACCCGTTTGGAGTTATGTC 596
Query 606 ATTGTGAGTTTGATCCGCCTCAGTATTTCAAAGGGTTTTCGTATCTGAAGAGTTTAAACC 665
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 597 ATTGTGAGTTTGATCCGCCTCAGTATTTCAAAGGGTTTTCGTCTCTGAAGAGTTTAAACC 656
Query 666 TTCACCAGATCCTTGTTGCTCCTGAGGTTATTGAAAGTCTGATCTCAGGATGTCCGCTTC 725
||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||
Sbjct 657 TTCACCAAATCCTTGTTGGTCCTGAGGTGATTGAAAGTCTGATCTCAGGGTGTCCGCTTC 716
Query 726 TCGAGTTCCTGTCTTTGTCTTACTTTGACAGTTTGGTTTTGAGTATATCAGCTCCGAATC 785
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 717 TCGAGTTCCTGTCTTTGTCTTACTTTGACAGTTTGGTTTTGAGTATATCTGCTCCGAATC 776
Query 786 TCATGTACTTGTATCTAGACGGCGAATTCAAAGACATTTTCCTCGAGAATACGCCCAAGC 845
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 777 TCATGTACTTGTATCTAGACGGCGAATTCAAAGACATTTTCCTCGAGAATACTCCCAAGT 836
Query 846 TAGTTGCAATATCGGTTTCAATGTACATGCATGAGGATGTTACTGATTTTGAGCAGAGTT 905
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 837 TAGTTGCAATATCGGTTTCAATGTACATGCATGAGGACGTTACTGATTTTGAGCAGAGTT 896
Query 906 CGGATTATAATCTCGTTAAGTTCCTTGGTGGTGTGCCCCTTCTTGAGAAGCTCGTCGGTT 965
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 897 CGGATTATAATCTAGTTAAGTTCCTTGGCGGTGTGCCCCTTCTTGAGAAGCTCGTTGGTT 956
Query 966 ATATCTACTTCACAAAGTACTTGAGTATAGGAGATGACCCGGGAAGGCTTCCACTTACTT 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 957 ATATCTACTTCACAAAGTACTTGAGTATAGGAGATGACCCGGGAAGGCTTCCAATTACTT 1016
Query 1026 ACATACATCTTAAAACTATAGAACTTTACCAAGTATGCTTTGAAGATGCCGATGAGGTGC 1085
|||| |||||||||||||||||||||||||||||| |||| |||||||| ||||| | |
Sbjct 1017 ACATTCATCTTAAAACTATAGAACTTTACCAAGTAAGCTTCGAAGATGCTAATGAGATAC 1076
Query 1086 TAGTTCTTCTTCGTTTGGTCACTCACTCTCCCAACCTTAAAGAGCTCAAAGTTTCGGCTT 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TAGTTCTTCTTCGTTTGGTCACTCACTCTCCCAACCTTAAAGAGCTCAAAGTTTCGGCTT 1136
Query 1146 CACCAGTCCAACCATTTCCTCTTGAAGAAGAAGGTTTTGACCTTTTCGAAAGAGATTACT 1205
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CACCAATCCAACTATTTCCTCTTGAAGAAGAAGGTTTTGACCTTTTCGAAAGAGATTACT 1196
Query 1206 TCGACTACAAACTCCCAAGCCTTGAAAGC-GTGAAGATAACAGACGCCTCTGGCATCAGA 1264
|||||||||||||||| |||||||||| | |||||||| ||||||| ||||||||||||
Sbjct 1197 TCGACTACAAACTCCCGAGCCTTGAAA-CTGTGAAGATGACAGACGTATCTGGCATCAGA 1255
Query 1265 TATGAATTGGAATTTATCAGATTCTTGCTGGGAACTTCACCAGTTTTGGAGACAGTCACT 1324
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1256 AATGAGTTGGAATTTATCAGATTCTTGCTGGGAACTTCTCCAGTTTTGGAGACAGTCATT 1315
Query 1325 GTATCATCAAGTTTA-TCAGATAAAGATGCGAAAATGGATATGGTTATCGAATTGCTCAG 1383
|||||||| |||||| | ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1316 GTATCATCGAGTTTAAT-AGATAAAGAAGCGAAAATGGATATGGTAATCGAATTGCTCAG 1374
Query 1384 GTATCCACGTGTCTCTCCTCGAGCTCAGCTCCTCTTCCTTCAAGACTGAAATCTGATTCC 1443
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1375 GTATCCGCGTGTCTCTCCTCGAGCTCAGCTCCTCTTCCTTCAAGACTGAAATCTGACTCC 1434
Query 1444 CCTtctccatctctctccctctctctct-TTCTGTTATCATGTCTAAACATGTTTTG 1499
||||||||||||||||||||| |||| | || | ||||||| || |||||||||||
Sbjct 1435 CCTTCTCCATCTCTCTCCCTCCCTCTGTGTTATCATATCATGACTGAACATGTTTTG 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5