BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13580.2
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471517 jgi|Araly1|471517|fgenesh2_kg.1__1471__AT1G13580.2 1969 0.0
> Ahg471517 jgi|Araly1|471517|fgenesh2_kg.1__1471__AT1G13580.2
Length=1239
Score = 1969 bits (1066), Expect = 0.0
Identities = 1189/1247 (95%), Gaps = 14/1247 (1%)
Strand=Plus/Plus
Query 64 GGTTTAAAGAGAGGATTTTACGGAGATGGGTTTGTTGGAATCGGTGAAATCAATCAACTG 123
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2 GGTTCAAAGAGAGGATTTTTCGGAGATGGGTTTGTTGGAATCGATGAAATCAATCAACTG 61
Query 124 GGAACATGAATCATCTCCGGTTTATCAGGATTTTCGAGTTCTTCCTCTCTTCGCTGTGTT 183
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 62 GGAACATGAATCATCTCCGGTTTATCAGGATTTTCGAGTTCTTCCTCTCTTTGCAGTGTT 121
Query 184 CTTCCCTTCGATTCGATTTCTCCTCGATAGATTCGTCTTCGAGAAATTGGCAAAATATTT 243
||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 122 CTTCCCTACTATTCGATTTCTCCTCGATAGATTCGTCTTCGAGAAATTGGCAAAACATTT 181
Query 244 GATCTATGGAAAACATAGACAGGATATGGGAGATGACACAACCGAGAGAAAGAAGAAGAT 303
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 182 GATATATGGAAAACATAGGCAGGATATGGGAGATGACACAACCGAGAGAAATAAGAAGAT 241
Query 304 CAGGAAATTCAAAGAATCGGCCTGGAAGTGTGTTTACTATCTATCAGCTGAGATTCTTGC 363
|||||||||||||||||| |||||||||| ||||||||| || |||||||||||||||||
Sbjct 242 CAGGAAATTCAAAGAATCTGCCTGGAAGTTTGTTTACTACCTGTCAGCTGAGATTCTTGC 301
Query 364 TTTATCTGTGACTTACAATGAGCCTTGGTTTATGAACACTAAATACTTTTGGGTAGGGCC 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 302 TTTATCTGTGACTTACAATGAGCCTTGGTTTATGAACACTAAATACTTTTGGGTAGGCCC 361
Query 424 TGGAGATCAGACTTGGCCTGATCAACAAACAAAGTTAAAGTTGAAGCTTTTGTATATGTT 483
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 362 TGGAGATCAGACTTGGCCTGATCAACAAACAAAGTTAAAATTGAAACTTTTGTATATGTT 421
Query 484 TGTGGCTGGTTTCTATACATACTCCATCTTTGCTCTGGTTTTCTGGGAAACGAGGCGTTC 543
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 422 TGTGGCTGGGTTCTATACATACTCCATCTTTGCTCTGATTTTCTGGGAAACGAGGCGTTC 481
Query 544 TGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTTCTCTCATA 603
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 482 TGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTCCTCTCATA 541
Query 604 CGTATGTAGCTTCTCCCGTGTTGGTTCTGTTGTTCTGGCACTTCACGATGCTAGTGATGT 663
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 542 CGTATGTAGCTTCTCCCGTGTTGGTTCTGTTGTTCTGGCTCTTCATGATGCTAGTGATGT 601
Query 664 GTTTCTTGAGGTTGGGAAAATGTCTAAATATAGTGGAGCTGAAAGAATCGCAAGCTTTTC 723
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GTTTCTTGAAGTTGGGAAAATGTCTAAATATAGTGGAGCTGAAAGAATCGCAAGCTTTTC 661
Query 724 GTTCATTCTTTTCGTTTTGTCTTGGATCATTCTCCGCCTCATTTACTATCCCTTTTGGAT 783
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 ATTCATTCTTTTCGTTATGTCTTGGATCATTCTCCGCCTCATTTACTATCCCTTTTGGAT 721
Query 784 CCTATGGAGTACAAGCTATGAAGTAGTTTTGGAGCTTGATAAAGACAAGCATCCAATCGA 843
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 722 CCTATGGAGCACAAGCTATGAAGTAGTTTTGGAGCTGGATAAAGACAAGCACCCAATCGA 781
Query 844 AGGACCAATTTACTACTACATGTTTAACACTCTCCTATATTGCTTGCTTGTTCTTCACAT 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AGGACCAATTTACTACTACATGTTTAACACTCTCCTATATTGCTTGCTTGTTCTTCACAT 841
Query 904 TTATTGGTGGGTTTTGATGTATCGGATGCTTGTGAAACAAATACAAGATAGAGGCAAGCT 963
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TTACTGGTGGGTTTTGATGCATCGGATGCTTGTGAAACAAATACAAGATAGAGGCAAGCT 901
Query 964 TAGTGAAGATGTCAGATCAGATTCTGAAGGCGAAGATGAGCACGAAGACTGATTTGATCA 1023
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 902 TAGTGAAGATGTCAGATCCGATTCTGAAGGCGAAGATGAGCACGAAGACTGATT-GATCA 960
Query 1024 CAAAGGTAGAT-AGAAATGTAAAAGCACGTTGTTCTCTCTTTACAT-ATTCGCAGATTCT 1081
|||||||||| ||||||||||||||||| ||||||||||| |||| || ||||||||||
Sbjct 961 CAAAGGTAGAAGAGAAATGTAAAAGCACGGTGTTCTCTCTTAACATTAT-CGCAGATTCT 1019
Query 1082 TTTGTTCTCTGTCTCTGTGATTCTGATCGCTAATGGGTGTTTAAGAGTGGAGGAGACTGA 1141
|||||||| |||||||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct 1020 TTTGTTCT--GTCTCTGTGATTCTGATCGCTAATTGGTGTTTAAGAGTGGAG-AC-C-GA 1074
Query 1142 GTCAT-CAATCTCTAACATTGGACCAACTCATGGAACATAACTGATTCAGGAGACATGAA 1200
|| || ||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 1075 GT-ATTCAATCTCCAACATTGGACCAACTCATGGAACAGAACTGATTAAGGAGACCTGAA 1133
Query 1201 ACTGTAGTTGTATTGAATTGTAGTCTGAACAAATTCCAGATCTTCTTGTATTGTATTCAT 1260
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1134 ATTGTAGTTGTATTGAATTGTAGTCTGAACAAATTCCATATCTTCTTGTATTGTATTCAT 1193
Query 1261 TTCTTGTTTTGGATCACTCACCA-TTCATGATATATATCAA-TGTTG 1305
||||||||| ||||||||||||| ||||||||||||| ||| |||||
Sbjct 1194 TTCTTGTTTAGGATCACTCACCAATTCATGATATATA-CAAATGTTG 1239
Score = 139 bits (75), Expect = 5e-32
Identities = 85/90 (94%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1316 TCAATCTCTAACATTGGACCAACTCATGGAACATAACTGATTCAGGAGACATGAAACTGT 1375
|||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||| |||
Sbjct 1079 TCAATCTCCAACATTGGACCAACTCATGGAACAGAACTGATTAAGGAGACCTGAAATTGT 1138
Query 1376 AGTTGTATTGAATTGTAGTCTGAACAAATT 1405
||||||||||||||||||||||||||||||
Sbjct 1139 AGTTGTATTGAATTGTAGTCTGAACAAATT 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5