BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G13590.1

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471519 jgi|Araly1|471519|fgenesh2_kg.1__1473__AT1G13590.1         547    2e-155


> Ahg471519 jgi|Araly1|471519|fgenesh2_kg.1__1473__AT1G13590.1
Length=386

 Score =  547 bits (296),  Expect = 2e-155
 Identities = 359/388 (93%), Gaps = 10/388 (3%)
 Strand=Plus/Plus

Query  3    aagaagaagaag-aagaaaaataaaagaaatgatgaagacgaaaagtgaagTGTTGATCT  61
            |||||||||||| || | ||| |||| |||| ||||||| |||||||||||||||| |||
Sbjct  1    AAGAAGAAGAAGAAACAGAAAGAAAA-AAATTATGAAGAGGAAAAGTGAAGTGTTGTTCT  59

Query  62   TTTTCTTCACTCTAGTATTGCTTTTAAGCATGGCTTCAAGTGTTATTTTAAGAGAAGATG  121
            | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   TCTTCTTCACTCTAGTGTTGCTTTTAAGCATGGCTTCAAGTGTTATTTTAAGAGAAGATG  119

Query  122  GTTTTGCTCCTCCTAAACCATCTCCCACCACACATGAGAAAGCAAG------TACTAAAG  175
            ||||||||||||||||||||||||||||||||||||||||||||||      ||||||||
Sbjct  120  GTTTTGCTCCTCCTAAACCATCTCCCACCACACATGAGAAAGCAAGAAGCAGTACTAAAG  179

Query  176  GTGACAGAGATGGAGTAGAGTGCAAGAATTCAGACAGTGAAGAAGAATGTCTTGTGAAGA  235
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  180  GTGACAGAGATGGAGTAGAGTGCAAGAATTTAGACAGTGAAGAAGAATGTCTTGTGAAGA  239

Query  236  AAACAGTAGCTGCTCACACCGATTACATCTATACACAAGATTTAAACCTATCTCCTTGAA  295
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  AAACTGTAGCTGCTCACACCGATTACATCTATACACAAGATTTAAACCTATCTCCTTGAA  299

Query  296  ACAAGAACTATTACTCTTTGTCTTTTATTTAGCAAACTATATGCATAAGCCTTTGAAAGG  355
            |||||||| ||||||||||||||||||||||||||| ||||  ||||| ||||||||| |
Sbjct  300  ACAAGAACCATTACTCTTTGTCTTTTATTTAGCAAATTATAAACATAAACCTTTGAAATG  359

Query  356  AGCTTCTCGCCCTCAAACTC-AGCTCTT  382
            ||||| ||||| | ||| || |||||||
Sbjct  360  AGCTTTTCGCCGTTAAA-TCCAGCTCTT  386



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15185924422


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5