BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13590.1 Length=422 Score E Sequences producing significant alignments: (Bits) Value Ahg471519 jgi|Araly1|471519|fgenesh2_kg.1__1473__AT1G13590.1 547 2e-155 > Ahg471519 jgi|Araly1|471519|fgenesh2_kg.1__1473__AT1G13590.1 Length=386 Score = 547 bits (296), Expect = 2e-155 Identities = 359/388 (93%), Gaps = 10/388 (3%) Strand=Plus/Plus Query 3 aagaagaagaag-aagaaaaataaaagaaatgatgaagacgaaaagtgaagTGTTGATCT 61 |||||||||||| || | ||| |||| |||| ||||||| |||||||||||||||| ||| Sbjct 1 AAGAAGAAGAAGAAACAGAAAGAAAA-AAATTATGAAGAGGAAAAGTGAAGTGTTGTTCT 59 Query 62 TTTTCTTCACTCTAGTATTGCTTTTAAGCATGGCTTCAAGTGTTATTTTAAGAGAAGATG 121 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TCTTCTTCACTCTAGTGTTGCTTTTAAGCATGGCTTCAAGTGTTATTTTAAGAGAAGATG 119 Query 122 GTTTTGCTCCTCCTAAACCATCTCCCACCACACATGAGAAAGCAAG------TACTAAAG 175 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 120 GTTTTGCTCCTCCTAAACCATCTCCCACCACACATGAGAAAGCAAGAAGCAGTACTAAAG 179 Query 176 GTGACAGAGATGGAGTAGAGTGCAAGAATTCAGACAGTGAAGAAGAATGTCTTGTGAAGA 235 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 180 GTGACAGAGATGGAGTAGAGTGCAAGAATTTAGACAGTGAAGAAGAATGTCTTGTGAAGA 239 Query 236 AAACAGTAGCTGCTCACACCGATTACATCTATACACAAGATTTAAACCTATCTCCTTGAA 295 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 AAACTGTAGCTGCTCACACCGATTACATCTATACACAAGATTTAAACCTATCTCCTTGAA 299 Query 296 ACAAGAACTATTACTCTTTGTCTTTTATTTAGCAAACTATATGCATAAGCCTTTGAAAGG 355 |||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||| | Sbjct 300 ACAAGAACCATTACTCTTTGTCTTTTATTTAGCAAATTATAAACATAAACCTTTGAAATG 359 Query 356 AGCTTCTCGCCCTCAAACTC-AGCTCTT 382 ||||| ||||| | ||| || ||||||| Sbjct 360 AGCTTTTCGCCGTTAAA-TCCAGCTCTT 386 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15185924422 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5