BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13600.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920239 jgi|Araly1|920239|scaffold_101520.1 953 0.0
> Ahg920239 jgi|Araly1|920239|scaffold_101520.1
Length=632
Score = 953 bits (516), Expect = 0.0
Identities = 580/611 (95%), Gaps = 4/611 (1%)
Strand=Plus/Plus
Query 73 AACAAATCAAAGCAAAGATCATGAACACGATTCCAGCCGAACTCACTGGATACTTCCACT 132
||||||||| | |||||||||||||||||||||| || |||||||| ||||||||||| |
Sbjct 1 AACAAATCATATCAAAGATCATGAACACGATTCCGGCAGAACTCACCGGATACTTCCATT 60
Query 133 ATCTACCACCAGATAAATATAATAACC-AAACACCAATCATGGAGTCTGAGTACTTCAAC 191
||||| |||| ||||| |||||||||| |||| |||||||||||||||||||||||||||
Sbjct 61 ATCTATCACCGGATAAGTATAATAACCAAAAC-CCAATCATGGAGTCTGAGTACTTCAAC 119
Query 192 ATGCCCTCTTCTCCTACTTCTTGTTCCT-CCTTCTACCACCTCAATGGTCTGATCAACAA 250
||||| |||||||||||||||| || || | |||||||||||||| ||| ||||||||||
Sbjct 120 ATGCCTTCTTCTCCTACTTCTTCTT-CTACATTCTACCACCTCAACGGTTTGATCAACAA 178
Query 251 CAACAACTACTCTTCATCATCCAATGGTCAGGATCTAATGACGAGCAACAACTCAACTTC 310
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 179 CAACAAGTACTCTTCATCATTCAATGGTCAGGATCTAATGACGAGCAACAACTCAACTTC 238
Query 311 AGACGAAGATCACCAACAAAGTATGGTCATCGATGAGAGGAAACAAAGGAGAATGATCTC 370
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 239 AGACGACGATCACCAACAAAGTATGGTCATCGATGAGAGGAAACAAAGAAGAATGATCTC 298
Query 371 TAACAGGGAATCTGCTCGTAGGTCAAGAATGAGAAAGCAGAGACATCTCGATGAGCTTTG 430
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 TAACAGGGAATCTGCTCGTAGGTCAAGGATGAGAAAGCAGAGACATCTCGATGAGCTTTG 358
Query 431 GTCTCAAGTGATAAGACTTCGCACTGATAACCACTGTCTTATGGATAAGCTGAACCGCGT 490
||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 359 GTCTCAAGTGAAAAGACTTCGCACTGATAACTACTGTCTTATCGATAAGCTGAACCGCGT 418
Query 491 ATCTGAAAGCCATGAGCTTGCTTTAAAGGAGAACGCTAAGCTTAAAGAGGAAACTTCTGA 550
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCTGAAAGCCATGAGCTTGCCTTAAAGGAGAACGCTAAGCTTAAAGAGGAAACTTCTGA 478
Query 551 TCTCAGACAGCTGATCTCTGAGATAAAGTCACACAACGAAGACGACAACAGTTTTTTAAG 610
|||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 479 TCTCAGACAGCTTATCTCTGAGATTAAGTCAAACAACGAAGACGACAACAGTTTTCTAAG 538
Query 611 AGAGCTCGAAGATTCGATATCAAACTCTAGATCGGATTCGAACCAAAGCGGCAGAGATTT 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGAGCTCGAAGATTCGATATCAAACTCTAGATCGGATTCGAACCAAAGCGGCAGAGATTT 598
Query 671 TGAGTTGTGTT 681
|||||||||||
Sbjct 599 TGAGTTGTGTT 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25084879386
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5