BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13600.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value Ahg920239 jgi|Araly1|920239|scaffold_101520.1 953 0.0 > Ahg920239 jgi|Araly1|920239|scaffold_101520.1 Length=632 Score = 953 bits (516), Expect = 0.0 Identities = 580/611 (95%), Gaps = 4/611 (1%) Strand=Plus/Plus Query 73 AACAAATCAAAGCAAAGATCATGAACACGATTCCAGCCGAACTCACTGGATACTTCCACT 132 ||||||||| | |||||||||||||||||||||| || |||||||| ||||||||||| | Sbjct 1 AACAAATCATATCAAAGATCATGAACACGATTCCGGCAGAACTCACCGGATACTTCCATT 60 Query 133 ATCTACCACCAGATAAATATAATAACC-AAACACCAATCATGGAGTCTGAGTACTTCAAC 191 ||||| |||| ||||| |||||||||| |||| ||||||||||||||||||||||||||| Sbjct 61 ATCTATCACCGGATAAGTATAATAACCAAAAC-CCAATCATGGAGTCTGAGTACTTCAAC 119 Query 192 ATGCCCTCTTCTCCTACTTCTTGTTCCT-CCTTCTACCACCTCAATGGTCTGATCAACAA 250 ||||| |||||||||||||||| || || | |||||||||||||| ||| |||||||||| Sbjct 120 ATGCCTTCTTCTCCTACTTCTTCTT-CTACATTCTACCACCTCAACGGTTTGATCAACAA 178 Query 251 CAACAACTACTCTTCATCATCCAATGGTCAGGATCTAATGACGAGCAACAACTCAACTTC 310 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 179 CAACAAGTACTCTTCATCATTCAATGGTCAGGATCTAATGACGAGCAACAACTCAACTTC 238 Query 311 AGACGAAGATCACCAACAAAGTATGGTCATCGATGAGAGGAAACAAAGGAGAATGATCTC 370 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 239 AGACGACGATCACCAACAAAGTATGGTCATCGATGAGAGGAAACAAAGAAGAATGATCTC 298 Query 371 TAACAGGGAATCTGCTCGTAGGTCAAGAATGAGAAAGCAGAGACATCTCGATGAGCTTTG 430 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 299 TAACAGGGAATCTGCTCGTAGGTCAAGGATGAGAAAGCAGAGACATCTCGATGAGCTTTG 358 Query 431 GTCTCAAGTGATAAGACTTCGCACTGATAACCACTGTCTTATGGATAAGCTGAACCGCGT 490 ||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 359 GTCTCAAGTGAAAAGACTTCGCACTGATAACTACTGTCTTATCGATAAGCTGAACCGCGT 418 Query 491 ATCTGAAAGCCATGAGCTTGCTTTAAAGGAGAACGCTAAGCTTAAAGAGGAAACTTCTGA 550 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 419 ATCTGAAAGCCATGAGCTTGCCTTAAAGGAGAACGCTAAGCTTAAAGAGGAAACTTCTGA 478 Query 551 TCTCAGACAGCTGATCTCTGAGATAAAGTCACACAACGAAGACGACAACAGTTTTTTAAG 610 |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| Sbjct 479 TCTCAGACAGCTTATCTCTGAGATTAAGTCAAACAACGAAGACGACAACAGTTTTCTAAG 538 Query 611 AGAGCTCGAAGATTCGATATCAAACTCTAGATCGGATTCGAACCAAAGCGGCAGAGATTT 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 AGAGCTCGAAGATTCGATATCAAACTCTAGATCGGATTCGAACCAAAGCGGCAGAGATTT 598 Query 671 TGAGTTGTGTT 681 ||||||||||| Sbjct 599 TGAGTTGTGTT 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25084879386 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5