BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13605.1
Length=473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911148 jgi|Araly1|911148|Al_scaffold_0001_1402 394 3e-109
> Ahg911148 jgi|Araly1|911148|Al_scaffold_0001_1402
Length=312
Score = 394 bits (213), Expect = 3e-109
Identities = 282/315 (90%), Gaps = 6/315 (2%)
Strand=Plus/Plus
Query 66 ATGGCGAGACTTATCTTTCATTTTGTATTTGCTCTTATCCTTGCAGCTTATTTATTGTCG 125
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1 ATGGCGAGACTTATCTTTCATTTTGTATTCGCTCTTATTGTTGCATATTATTTATTGTCG 60
Query 126 GTAACTGATGCGATACCT-AGAGGATGGCAAGAACCGTGCTTTTGTCCTTCCAAAAATCC 184
||| ||||||||||| | |||| |||| ||||||| |||||||||||||||| ||||||
Sbjct 61 GTATCTGATGCGATA-GTAAGAGAATGGAAAGAACCATGCTTTTGTCCTTCCACAAATCC 119
Query 185 TTACTGCGACTGTGGCGATGATCTTCAAGTTCCTACTACTTCAGTGATTAGTCCTAAACC 244
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 120 TTACTGCAACTGTGGCGATGATCTTCAAGTTCCTACTCCTTCAGTGATTGGTCCTAACCC 179
Query 245 TATAATTGAGCAGTGTGCGCGTTGCGAA-AGAAACTCTCAATGCAACAAAGTTTGTCCGG 303
|| ||| || |||||||||||||| || ||||||||||||| ||||||||||||||||
Sbjct 180 TAAAATCGAAAAGTGTGCGCGTTGC-AATGGAAACTCTCAATGTAACAAAGTTTGTCCGG 238
Query 304 CAACGTGCAAATACAAAGTCTGTATATTTAATCGAACATGTGAGTT-CAGTACATGTCAT 362
||||||||||||||||||||||||||| |||| ||||||||| || || ||||||| ||
Sbjct 239 CAACGTGCAAATACAAAGTCTGTATATACAATCCAACATGTGATTTGCA-TACATGTTAT 297
Query 363 TGCTATAGATGTTGA 377
||||||| |||||||
Sbjct 298 TGCTATATATGTTGA 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17131859461
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5