BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G13607.1

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312367 jgi|Araly1|312367|fgenesh1_pm.C_scaffold_1001147           252    1e-66


> Ahg312367 jgi|Araly1|312367|fgenesh1_pm.C_scaffold_1001147
Length=237

 Score =  252 bits (136),  Expect = 1e-66
 Identities = 203/235 (86%), Gaps = 6/235 (3%)
 Strand=Plus/Plus

Query  1    ATGAACAATTTTCGAATAACCATTGTTGCGTTCTTAGCCGTTCTTGTCTTCACCACAACT  60
            ||||| ||| |||||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct  1    ATGAAGAATCTTCGAATAACCATTATTGCGTTCCTGGCCGTTCTTGTCTTCACCACAACT  60

Query  61   GTTACGAATTCTTTGGATGAACCTAATATGGACACTATATCCAAATCCAGAGAATACAAA  120
            ||||| ||||||||||||||| ||||  ||||||||||||||  || || |||| |||| 
Sbjct  61   GTTACAAATTCTTTGGATGAATCTAAGGTGGACACTATATCCGGATTCATAGAAAACAAT  120

Query  121  TGTAAAATTG-ACCTGGATTGTTCAAACCACATTGCATGTAGGCATTGTTCTTATCGCAA  179
            |||||| ||| ||| || ||||| |||||| |||||||||| ||||||||| ||||||||
Sbjct  121  TGTAAA-TTGGACCAGGGTTGTTTAAACCATATTGCATGTAAGCATTGTTCCTATCGCAA  179

Query  180  TTGCAAATGCGATCATGGAACCTGTAAATGCATGCCATGACTCTTAACCCACAAG  234
            ||||||||||||| ||||||| |||||||||   | ||| |||| ||||| ||||
Sbjct  180  TTGCAAATGCGATAATGGAACTTGTAAATGC---C-ATGGCTCTAAACCCCCAAG  230



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12019010535


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5