BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13608.1
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920243 jgi|Araly1|920243|scaffold_101524.1 243 6e-64
> Ahg920243 jgi|Araly1|920243|scaffold_101524.1
Length=293
Score = 243 bits (131), Expect = 6e-64
Identities = 174/195 (89%), Gaps = 1/195 (1%)
Strand=Plus/Plus
Query 43 CTTTTTCAAACTCTGTGGTGGAAGCCAAGGGGAAAGAGGCCACAATCAAATTTTCATGCA 102
|||||||||||||||||||||||||||| ||||||| || ||||| ||| ||||||
Sbjct 80 CTTTTTCAAACTCTGTGGTGGAAGCCAATAAGAAAGAGATCATAATCACATTCACATGCA 139
Query 103 AAAAGAATTCGGACTGTTTTACAAACATTGCTTGTTATGCTTTGTACTGATTACCGATGT 162
||||||| ||||||||||| ||||||||||||||| | || |||| ||||| |||||||
Sbjct 140 AAAAGAAATCGGACTGTTTCACAAACATTGCTTGTGAAGC-TTGTGTTGATTGCCGATGT 198
Query 163 GATAAAGGATTATGTAAATGCCATGGTTTTGGTGGAGAAAAGGAAAATCCCACAGCTGCG 222
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 199 GATAAAGGATTATGTAAATGCCATGGTTTTGGTGGAGACAAGGGAAATCCAACAGCTGCG 258
Query 223 CCATTAACTGCTTAA 237
||||||||| |||||
Sbjct 259 CCATTAACTCCTTAA 273
Score = 67.6 bits (36), Expect = 4e-11
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1 ATGAGCAATCTTCGCCTAACCATTGCAGTGTTTTTGGCCGCTCTT 45
|||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 22 ATGACCAACCTTCGCGTAACCATTGCAGTGTTTTTGGCCGCTCTT 66
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8172287854
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5