BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G13609.1

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471521 jgi|Araly1|471521|fgenesh2_kg.1__1475__AT1G13609.1         475    9e-134


> Ahg471521 jgi|Araly1|471521|fgenesh2_kg.1__1475__AT1G13609.1
Length=334

 Score =  475 bits (257),  Expect = 9e-134
 Identities = 311/336 (93%), Gaps = 8/336 (2%)
 Strand=Plus/Plus

Query  5    TACACTAATTTCATTACAAACCAAACTAAAATAATATACATCGTTCATTTCATATTCAAC  64
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1    TACACTAATTTCATTACAAACCAAACTAAAATAATATACATCGTTCCTTTCATATTCAAC  60

Query  65   AGAAGGAATCGGTTTTAAAAC-TCA--A-AGAGAAAAATGAACAACCTTCGCGTAATTAT  120
            ||||||||||||||| ||||| | |  | |||||||||||||||| ||||||||||||||
Sbjct  61   AGAAGGAATCGGTTTCAAAACATAATTAGAGAGAAAAATGAACAATCTTCGCGTAATTAT  120

Query  121  -GTCAGTGTTATTGGCCGTTCTTGTCTTCACAGCGACTGTTTCAGAGTCTGCAGAGGAAA  179
             | | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct  121  AG-CTGTGTTATTGGCCGTTCTTGTCTTCACCGCGACTGTTTCAGAGTCTGCGGAGGAAA  179

Query  180  TGGGGAA-GGGTGAGGTCACAATCTCACTTAGATGCAAAACGAAAACAGAATGCTTAAAG  238
            |||| || ||| || |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct  180  TGGGAAAAGGG-GATGTCACAATCTCACTTAAATGCAAAACGAAAACGGAATGCTTAAAG  238

Query  239  AACATTGCCTGTGAAGCTTGTGTCGATTGTCGATGCGATAAAGGAATTTGTAAATGCCAT  298
            |||||||| ||||| |||||||||||||||||||||||||  |||| |||||||||||||
Sbjct  239  AACATTGCGTGTGAGGCTTGTGTCGATTGTCGATGCGATAGTGGAACTTGTAAATGCCAT  298

Query  299  GGTTTCACAGCAGAAACCAACAATCCAACCGTTTAA  334
            |||||||||||||||||||| |||||||||||||||
Sbjct  299  GGTTTCACAGCAGAAACCAATAATCCAACCGTTTAA  334



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13583389684


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5