BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13610.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471522 jgi|Araly1|471522|fgenesh2_kg.1__1476__AT1G13610.1 1749 0.0
> Ahg471522 jgi|Araly1|471522|fgenesh2_kg.1__1476__AT1G13610.1
Length=1118
Score = 1749 bits (947), Expect = 0.0
Identities = 1062/1118 (95%), Gaps = 6/1118 (1%)
Strand=Plus/Plus
Query 34 TTGAGTGAAATGGGAATTGCGACGTCGACTATGGCGGCGAAGTTAGCATTCTTCCCACCA 93
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TTGAGTGAAATGGGAATTGCGACGTCGACGATGGCGGCGAAGTTAGCATTCTTCCCACCA 60
Query 94 AATCCGCCGTCGTACACGGTGGTGACTGAAGAATCTACGGGGAAGATGATGATTTCTACG 153
||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 61 AATCCGCCGTCGTACACGGTGGTGACTGAGGAATCAACGGGGAAGATGAGGATTTCTACG 120
Query 154 AACCTGCCGCATTACCTAAGAGATGAGAACATCGAAGTGGTGAAGATAAGGACAAAAAGA 213
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 121 AACATGCCGCATTACCTAAGAGATGAGAACATCGAAGTGGTGAAGATAAGGACGAGAAGA 180
Query 214 GGGAATGAGATTGTGGCCATGTATGTGAAGAATCCAACCGCTAAACTCACTGTTTTGTTT 273
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 181 GGGAATGAGATTGTGGCCATGTATGTGAAAAATCCAACCGCTAAACTCACCGTTTTGTTT 240
Query 274 TCTCATGGCAACGCTTCCGATCTTGCTCAGATTTTCTACATCTTAGCGGAACTAATTCAA 333
|||||||||||||| | ||||||||||| |||||||||||||| || ||||||||||||
Sbjct 241 TCTCATGGCAACGCCGCTGATCTTGCTCACATTTTCTACATCTTCGCTGAACTAATTCAA 300
Query 334 CTCAATGTCAATCTCATGGGATACGATTATTCAGGATATGGGCAATCTTCTGGTAAGCCA 393
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 301 CTCAATGTCAATCTCATGGGATATGATTACTCAGGATATGGGCAATCTTCTGGTAAGCCA 360
Query 394 AGCGAGCAAGATACGTACGCAGACATAGAAGCAGCTTACAATTGGCTAAGACAGACCTAC 453
||||||||||| ||||||||||| || ||||||||| |||||||||||||| |||| ||
Sbjct 361 AGCGAGCAAGAGACGTACGCAGATATCGAAGCAGCTCACAATTGGCTAAGAGAGACGTAT 420
Query 454 GGTACAAAAGATGAACGTATCATTTTGTATGGACAATCCGTTGGAAGTGGACCGTCGCTT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTACAAAAGATGAACGTATCATTTTGTATGGACAATCCGTTGGAAGTGGACCGTCGCTT 480
Query 514 GAGCTTGCTTCTCGTCTTCCACGTCTCCGAGCACTTGTTCTCCATAGTCCTTTCTTGTCT 573
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 GAGCTAGCTTCTCGTCTTCCACGTCTCCGAGCACTTGTTCTTCATAGTCCTTTCTTGTCC 540
Query 574 GGTCTACGTGTTATGTACCCTGTCAAGCACTCCTTCCCGTTCGACATTTACAAGAATATT 633
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTCTACGTGTCATGTACCCTCTCAAGCACTCCTTCCCGTTCGACATTTACAAGAATATC 600
Query 634 GACAAAATTCATCTCGTGGAGTGTCCTGTTCTTGTAATTCATGGAACAGATGACGATGTG 693
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 601 GACAAAATTCATCTCGTAAACTGTCCTGTTCTTGTAATTCATGGAACAGATGACGACGTG 660
Query 694 GTGAATATTTCACATGGAAAACATTTATGGGGACTATGCAAAGAAAAATACGAACCCTTA 753
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 GTGAATATTTCACATGGAAAACATTTATGGGGACTATGCAAAGAAAAATATGAACCCTTG 720
Query 754 TGGCTTAAAGGAAGAGGCCATTCTGATATTGAGATGTCTCCTGAGTACTTACCTCACTTA 813
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 721 TGGCTTAAAGGAAGAGGCCATTGTGATATTGAGACGTCTCCTGAGTACTTACCTCACTTA 780
Query 814 AGAAAGTTCATTTCAGCCATTGAGAAGCTTCCAGTTCCAAAATTTCGACGCCAATCATTG 873
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 781 AGAAAGTTCATTTCAGCCATTGAGAAGCTTCCAGTTCCAAAATTCCGACGCCTATCATTG 840
Query 874 GCTAATGACCACAAGAACGACAAATCAACGAAGAGTAG---CTGGATTGGATCTAGACAT 930
||| ||||||||||||| || |||||||| |||||||| ||||||||||||||||||
Sbjct 841 GCTGATGACCACAAGAAAGAGAAATCAACAAAGAGTAGTAATTGGATTGGATCTAGACAT 900
Query 931 AGCATAGAATGTGTT-C--CTCCTAGAGACAAATCAAGAAAGATAAGTATCGATCATCGG 987
||||||||||||||| | || | |||||||||||||||||||| |||||||||||||||
Sbjct 901 AGCATAGAATGTGTTACTACTGCAAGAGACAAATCAAGAAAGATTAGTATCGATCATCGG 960
Query 988 TTTGGGAAGCCGAGAAACAGCGTGGGTAGCTCTGATCGGGCTAGGAATAGCTTCGACAGG 1047
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 961 TTTGGGAAGGCGAGAAACAGCGTGGATAGCTCTGATCGGGCTAGGAATAGCTTCGACAGG 1020
Query 1048 TTGGGTGAAATGGTGAGATCAGTTCGGTTGTGTAATGTTGATTGTGTGAAGAATGCAGTT 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTGGGTGAAATGGTGAGATCAGTTCGGTTGTGTAATGTTGATTGTGTGAAGAATGCAGTT 1080
Query 1108 GCAGAGGTTTGATGATTGTTGTCACAATATTGtttttt 1145
||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCAGAGGTTTGATGATTGTTGTCACAATATTGTTTTTT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5