BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G13620.1

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471524 jgi|Araly1|471524|fgenesh2_kg.1__1478__AT1G13620.1         558    1e-158


> Ahg471524 jgi|Araly1|471524|fgenesh2_kg.1__1478__AT1G13620.1
Length=544

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 363/391 (93%), Gaps = 9/391 (2%)
 Strand=Plus/Plus

Query  1    TCACAACTCATTTTGAGAACATTTTTCGTAGCTAAGAGAAGAAAATAAGACATGACCAAT  60
            ||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct  1    TCATAACTCATTTTGAGAACA-TTTTCGTAGCTAAGGGAAGAAAATAAGAGATGACCAAT  59

Query  61   ATCACTTCAAGCTTTCTGTGTTTGTTGATCCTTCTTTTGTTTTGCCTCTCTTTTGGATAT  120
             ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct  60   GTCACTTCAAGCTTTCTGTGTTTGTTGATCCTTCTTTTGTTTCGCCTCTCCTTTGGATAT  119

Query  121  TCTCTTCATGGTGATAAGGATGAAGTG-CTAAGTGTTGACGTCGGTTCAAATGCAAAGGT  179
            ||||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct  120  TCTCTTCATGGAGATAAGGATGAAGTGTC-AAGTGTTGAAGTCGGTTCAAATGCAAAGGT  178

Query  180  TATGAAGCATCTTGATG-----G-TGATGATGCAATGAAGAAGGCGCAAGTACGAGGAAG  233
            |||||||||||||||||     | ||||||||||||||||||||| ||||||||||||||
Sbjct  179  TATGAAGCATCTTGATGATAATGATGATGATGCAATGAAGAAGGCACAAGTACGAGGAAG  238

Query  234  AAGTGGACAAGAGTTTAGCAAGGAAACGACAAAGATGATGATGAAGAAGACAACAAAGAA  293
            || |||| |||||||||| ||||||| ||||| ||||||||||||||||||||| || ||
Sbjct  239  AATTGGAGAAGAGTTTAGTAAGGAAAAGACAATGATGATGATGAAGAAGACAACGAATAA  298

Query  294  AGAGACAAATGTTGAGGAAGAGGATGATCTCGTTGCCTACACTGCTGATTACTGGAAACC  353
            |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  299  AGAGACAAGTGTTGAGGAAGAGGATGATCTCGTTGCCTACACTGCTGACTACTGGAAACC  358

Query  354  AAGGCACCATCCTCCCAAAAACAACTGATCA  384
            |||||||||||||||||| ||||||||||||
Sbjct  359  AAGGCACCATCCTCCCAAGAACAACTGATCA  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22949996034


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5