BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13630.1
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911153 jgi|Araly1|911153|Al_scaffold_0001_1407 3290 0.0
> Ahg911153 jgi|Araly1|911153|Al_scaffold_0001_1407
Length=2415
Score = 3290 bits (1781), Expect = 0.0
Identities = 2092/2240 (93%), Gaps = 30/2240 (1%)
Strand=Plus/Plus
Query 7 GATGAGTCATTACCCACAACCAATTCCACTTCCGATCACAGAGGCTTCTATAAAGAGATT 66
|||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 40 GATGAGTCATCACCCACAACCAATTTCACTTCCGATCACAGAGACTTCTACCAAGAGATT 99
Query 67 CTCTTTGGGATGAAGAAGATTGGGTTCCGCGAGTTTCTTCACGGGTATCACTTTCGAGGT 126
||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 100 CTCTTTGGGATGAAGAAGATTGGTTTCCGTGAGTTTCTTCACGGGCATCACTTTCGAGGC 159
Query 127 TTGGTTTCGGAATTGAGGCATG-TTCATGTCGAAGAAATCATGGATGAATTGATGTCTGA 185
||||||||||||||||| || | | || |||||||| ||||||| |||||| ||||||||
Sbjct 160 TTGGTTTCGGAATTGAGACA-GATACACGTCGAAGATATCATGGCTGAATTAATGTCTGA 218
Query 186 AAGCTCAGATCTTTCTGTTTGGTTTTTCAAAGAGCTGAGAGATATCTATGCGTTTCGTCA 245
||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 219 AAGCTCAGATCTTTCGGTTTGGTTTTTCAAAGAGCTGAGAGATATTTATGGGTTTCGTCA 278
Query 246 TTCGAGTTTTTCCACATTGTTGGTTTCACATGTTTTAGCTGGTCAAAGACGTTTCAAAGA 305
||| || |||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 279 TTCCAGATTTTCCACATTGTTGGTTTCACATATTTTCGCAGGTCAAAGACGTTTCAAAGA 338
Query 306 GCTTCAAGTGATTCTGGAACAATTGCTTC---AAGAA-G-AA-----G-G---------C 345
|||||||||||||||||||||||| || | ||||| | || | | |
Sbjct 339 GCTTCAAGTGATTCTGGAACAATTCCTCCAAGAAGAAGGCAAGCTTTGTGAACTTCTCTC 398
Query 346 ----ACCTTCAGAAAGTGGGAGTCTACGGGATTAGTTTGGGATATGTTGTTGTTTCTTTC 401
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 TAATAGCTTCAGAAAGTGGGAGTCTACGGGATTAGTTTGGGATATGTTGTTGTTTCTTTC 458
Query 402 ATCAAGATTGAGAATGGTTGATGATTCTCTTTATATCTTGAAAAAGATGAAGGATCAGAA 461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 459 ATCAAGATTGAGAATGGTTGATGATTCTCTTTATATCTTGAAAAAGATGAAGGATCGGAA 518
Query 462 CTTGAATGTGTCGACACAGTCGTACAACTCCGTTTTGTATCATTTTAGAGAGACGGATAA 521
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 519 CTTGAATGTGTCGACACAGTCGTACAACTCCGTTTTGTATAATTTTAGAGAGACGGATAA 578
Query 522 GATGTGGGATGTGTACAAGGAAATCAAGGATAAGAACGAGCACACGTACTCAACAGTTGT 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GATGTGGGATGTGTACAAGGAAATCAAGGATAAGAACGAGCACACGTACTCAACAGTTGT 638
Query 582 AGATGGTTTGTGTAGGCAACAAAAGCTAGAGGATGCAGTTTTGTTCCTTCGAACTTCAGA 641
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 639 AGATGGTTTGTGTAGGCAACAAAAGCTAGAAGATGCAGTTTTGTTCCTCCGAACTTCAGA 698
Query 642 GTGGAAGGATATTGGTCCCTCTGTAGTTTCTTTCAATAGTATAATGTCAGGTTACTGTAA 701
||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 699 GTGGAAGGATATTGGCCCCTCTGTAGTTTCTTTTAATAGTATAATGTCAAGTTACTGTAA 758
Query 702 ATTGGGTTTTGTAGATATGGCGAAGTCGTTTTTCTGTACAGTTTTGAAATGTGGGTTGGT 761
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 759 ATTGGGTTTTGTAGATATGGCGAAGTCGTTTTTCTGTACAGTTTTGAAATGTGGATTGGT 818
Query 762 TCCTAGTGTATATAGTCACAATATACTCATCAATGGACTCTGTCTAGTTGGTTCTATCGC 821
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 819 TCCTAGTGTATATAGTCACAATATACTCATCAACGGACTCTGTCTAGTTGGTTCTATCGC 878
Query 822 AGAAGCTTTAGAGTTGGCTAGTGACATGAATAAGCATGGAGTGGAACCTGATTCTGTGAC 881
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 879 AGAAGCTTTAGAGTTGGCTAGTGATATGAATAAGCATGGAGTGGAACCTGATTCTGTGAC 938
Query 882 ATACAATATTCTTGCGAAAGGGTTTCATCTTCTCGGTATGATCAGTGGGGCTTGGGAGGT 941
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 939 ATACAATATTCTTGTGAAAGGGTTTCATCTTCTCGGTATGATCAGTGGGGCTGGGGAGGT 998
Query 942 AATTCGAGATATGTTGGATAAAGGATTGAGTCCTGATGTTATTACATACACAATTTTACT 1001
|||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 999 TATTCAAGATATGTTGGATAAAGGTTTGAGTCCTGATGTTATTACATACACAATATTACT 1058
Query 1002 ATGTGGACAATGTCAGTTAGGAAATATTGACATGGGTTTAGTATTGCTGAAGGATATGTT 1061
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1059 ATGTGGGCAATGTCAGTTAGGAAATATTGACATGGGTTTAATATTGCTGAAGGATATGTT 1118
Query 1062 GTCGAGGGGATTTGAGTTAAACAGTATCATCCCATGCAGTGTAATGCTCAGTGGTTTATG 1121
||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 1119 GTCGAGGGGATTTGAGTTAAAAAGTATCATCCCCTACAGTGTAATGCTCAGTGGTTTATG 1178
Query 1122 TAAAACAGGAAGAATAGATGAAGCTTTGTCGTTATTCAATCAAATGAAAGCCGATGGTCT 1181
|||||||||| || ||||||||||||||||||||||| || | || ||||| |||||||
Sbjct 1179 TAAAACAGGACGAGTAGATGAAGCTTTGTCGTTATTCTATGATTTGGAAGCCTATGGTCT 1238
Query 1182 GAGCCCTGATCTTGTAGCATATTCTATTGTGATTCATGGCCTCTGCAAGTTAGGAAAATT 1241
|| ||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1239 GACCCCTGATCTCGTGGCATATTCTATTGTGATTCATGGCCTGTGCAAGTTAGGAAAATT 1298
Query 1242 TGATATGGCTCTTTGGCTTTACGACGAGATGTGTGACAAAAGAATTCTTCCGAATTCGAG 1301
|||||||||| || |||||| ||||||||||||| |||||||||||||||||||||| ||
Sbjct 1299 TGATATGGCTGTTAGGCTTTTCGACGAGATGTGTTACAAAAGAATTCTTCCGAATTCTAG 1358
Query 1302 GACTCATGGTGCTCTTTTGCTCGGTTTATGTCAGAAAGGGATGTTACTTGAGGCAAGATC 1361
||| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GACACTTGGTGCTATTATGCTCGGTTTATGTCAGAAAGGGATGTTACTTGAGGCAAGATC 1418
Query 1362 GCTTTTGGATTCTCTGATTTCAAGTGGAGAGACACTGGATATTGTTCTGTACAATATCGT 1421
|||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1419 GCTTCTGGATTCTCTGATTTCAAGTGGAGACACACTGGATATTATTCTGTACAATATCGT 1478
Query 1422 AATTGACGGGTATGCAAAGTCTGGTTGCATTGAGGAGGCGTTAGAGTTATTCAAAGTAG- 1480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1479 AATTGACGGGTATGCAAAGTCTGGTTGCATTGAGGAGGCGTTAGAGTTATTCAAGGTAGC 1538
Query 1481 TCATTGAGACTGGGATAACTCCTAGCGTTGCAACTTTTAATTCTTTGATATACGGGTATT 1540
| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1539 T-ATTGAGAGTGGGATAACTCCTAACGTTGCAACTTTTAATTCTTTGATTTACGGGTATT 1597
Query 1541 GCAAAACCCAGAATATAGCTGAGGCTAGAAAAATCTTAGATGTCATCAAGTTATATGGAT 1600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1598 GCAAAACCCAGAATATAGCTGAGGCTAGAAAAATCTTGGATGTCATCAAGTTATATGGAT 1657
Query 1601 TGGCTCCAAGTGTTGTGAGTTATACAACTCTGATGGATGCATATGCAAATTGTGGAAATA 1660
||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 1658 TGGTTCCAAGTGTTGTGAGTTATACAACTCTGATGGATGCGTACGCAAATTGTGGAAGTA 1717
Query 1661 CCAAAAGCATAGATGAATTGCGCAGGGAAATGAAAGCAGAAGGAATCCCACCAACCAATG 1720
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 TCAAAAGCATAGAAGAATTGCGCAGGGAAATGAAAGCAGAAGGAATCCCACCAACCAATG 1777
Query 1721 TCACGTACTCAGTGATTTTTAAAGGACTTTGCAGAGGCTGGAAACATGAAAATTGCAACC 1780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1778 TCACGTACTCAGTGATTTTTAAAGGACTTTGCAGAGGCTGGAAACTTGAAAATTGCAACC 1837
Query 1781 ATGTACTCAGGGAAAGGATATTCGAAAAATGCAAGCAGGGACTCAGGGACATGGAATCTG 1840
| |||||||||| ||||||| ||||||||| ||| || | ||||||||||||||||||||
Sbjct 1838 AGGTACTCAGGGGAAGGATACTCGAAAAATTCAACCATGTACTCAGGGACATGGAATCTG 1897
Query 1841 AAGGTATACCTCCAGATCAGATCACATATAATACAATTATTCAGTATCTATGCAGAGTTA 1900
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1898 AAGGTATAACTCCAGATCAGATCACATACAATACAATTATTCAGTATCTATGCAGAGTTA 1957
Query 1901 AACATTTATCTGGAGCATTTGTGTT-TCTCGAAATAATGAAATCTCGAAATCTTGATGCT 1959
|||||||||| ||||||||| ||| | | ||| ||||||||||| |||||||||| ||
Sbjct 1958 AACATTTATCCAGAGCATTTGAGTTATTTAAAAA-AATGAAATCTCAAAATCTTGATCCT 2016
Query 1960 TCATCTGCTACTTATAATATTCTAATCGACAGCCTTTGTGTCTACGGTTACATAAGGAAA 2019
| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 2017 ACGTCTGCTACTTATAATATTCTAATCGACAGCCTTTGTATCTACGGTTGCATAAGGAAA 2076
Query 2020 GCTGACAGTTTTATCTATTCGCTCCAGGAGCAGAATGTTAGTTTGTCCAAATTTGCTTAT 2079
|||||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2077 GCTGACAGGTTTCTCTATTCGCTCCAGAAGCGGAATGTTAGTTTGTCCAAATTTGCTTAT 2136
Query 2080 ACCACACTGATCAAGGCACATTGTGTAAAGGGTGACCCTGAAATGGCAGTGAAGCTATTT 2139
|||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 2137 ACCACAGTGATCAAGGCACATTGTGTAAAAGGTGACCCTGAAATGGCAGTGATTCTATTT 2196
Query 2140 CATCAACTGCTGCACAGAGGATTCAATGTTTCCATTAGGGACTATAGCGCGGTGATCAAC 2199
|||| |||||| |||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2197 AATCAGCTGCTGGACAGAGGATTCAATGTTTCCATCAGGGACTATAGCGCGGTCATCAAT 2256
Query 2200 CGTTTGTGTAGGAGACATTT 2219
||||||||||||||||||||
Sbjct 2257 CGTTTGTGTAGGAGACATTT 2276
Score = 89.8 bits (48), Expect = 9e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 2220 GATGAATTGCTTTCCTGGACAATCAAATGGGGTTTGTTGCCTGATTAGTAA 2270
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2365 GATGAATTGCTTTCCTGGACAATCAAATGGGGTTTGTTGCCTGATCAGTAA 2415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91226136775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5