BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13635.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471526 jgi|Araly1|471526|fgenesh2_kg.1__1480__AT1G13635.1 1524 0.0
> Ahg471526 jgi|Araly1|471526|fgenesh2_kg.1__1480__AT1G13635.1
Length=981
Score = 1524 bits (825), Expect = 0.0
Identities = 933/985 (95%), Gaps = 7/985 (1%)
Strand=Plus/Plus
Query 1 GATGTATAAGGCAAGTCCTaaaagaaaagagattgtagagaaaagcaagagtgtaagaga 60
|||||| || ||||||||| |||||| ||||||||| ||||||||||||| |||||||||
Sbjct 1 GATGTACAAAGCAAGTCCTCAAAGAAGAGAGATTGTGGAGAAAAGCAAGAATGTAAGAGA 60
Query 61 gaaggagattaaacaaaaCTCAAATTTCTTTGCCAAACACTTAAAGAGGATTTACCCAAT 120
|||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 61 GAAGGAGACTAAGCAAAACTCAAATTTCTTTGCAAAACACTTAAAGAGAATTTACCCAAT 120
Query 121 CACGCTTCAACGAAGCACTTCTTCTTCATTTTCACTCTCTTCTATATCTCTATCACTCTC 180
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 121 CACGCTTCAACGAAGCACTTCTTCTTCATTCTCAATCTCTTCTATATCTCTGTCACTCTC 180
Query 181 TCAGAACTCGACCGATTCTGTTTCCACGGATTCAAATTCGACGTTGGAACAAAAGATCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAGAACTCGACCGATTCTGTTTCCACGGATTCAAATTCGACGTTGGAACAAAAGATCTC 240
Query 241 TCTGGCACTCGGTTTAATCTCATCTCCCCACAGAAGAGAAATATTTGTTCCAAAAAGTAT 300
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 241 TCTAGCACTCGGTTTAATCTCATCTCCCTACAGAAGAGAAACATTTGTTCCAAAAAGTAT 300
Query 301 CCCACAACAACTATGTCAGGATTTCAATAGTAGTGATGAACCAAAGAGGTGCAACTGGAT 360
||| ||||||||||||||||||||| | | |||||||||||||||||||||||| |||||
Sbjct 301 CCCGCAACAACTATGTCAGGATTTC-A-A-TAGTGATGAACCAAAGAGGTGCAATTGGAT 357
Query 361 CACCAAGAAAAGTGACGAAGTCTACGTAATGTTTCATGACCAGCAATGGGGAGTCCCTGT 420
||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 358 CACCAAGAAAAGTGATGAAGTCTACGTAACGTTTCATGACCAGCAGTGGGGAGTCCCTGC 417
Query 421 CTATGATGATAACCTGCTTTTTGAGTTCCTTGCCATGTCGGGGATGTTAATGGACTATAA 480
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 418 CTATGATGATAACCTGCTTTTTGAGTTACTTGCGATGTCGGGGATGTTAATGGACTATAA 477
Query 481 CTGGACCGAGATTCTAAAACGCAAAGAACACTTTAGAGAGGCATTTTGTGAGTTTGACCC 540
|||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 478 TTGGACCGAGATTATAAAACGCAAAGAACTCTTTAGAGAGGCCTTTTGTGAGTTTGACCC 537
Query 541 AAATCGGGTGGCCAAAATGGGAGAGAAAGAGATCGCAGAGATTGCATCAAATAAAGCAAT 600
||||| ||| |||||||||||||||||||| ||| |||| ||||||||||| ||||||||
Sbjct 538 AAATCTGGTAGCCAAAATGGGAGAGAAAGATATCACAGAAATTGCATCAAACAAAGCAAT 597
Query 601 AATGTTACAAGAGAGTAGAGTCAGGTGTATAGTCGACAATGCCAAATGCATAACCAAGGT 660
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 598 AATGTTACAAGAGAGTAGAGTAAGGTGTATAGTCGACAATGCCAAATGCATAACCAAGGT 657
Query 661 GGTCAATGAATTTGGATCATTCAGCAGCTTCGTTTGGGGGTTTATGGATTACAAACCTAT 720
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 658 GGTCAAGGAATTTGGATCATTCAGCAGCTTCATTTGGGGGTTTATGGATTACAAACCTAT 717
Query 721 CATTAACAAATTCAAGTATTCAAGAAATGTACCATTGAGATCTCCTAAGGCTGAGATAAT 780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 718 CATTAACAAATTCAAGTATTCAAGAAATGTACCATTGAGATCTCCCAAGGCTGAGATAAT 777
Query 781 TAGCAAAGATATGATCAAACGAGGGTTTCGATTTGTCGGTCCAGTGATCGTACATTCGTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TAGCAAAGATATGATCAAACGAGGGTTTCGATTTGTCGGTCCAGTGATCGTACATTCGTT 837
Query 841 CATGCAGGCTGCAGGGTTAACAATTGATCACCTCGTCGATTGTTTTAGACATGGTGATTG 900
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 838 CATGCAGGCTGCAGGGTTAACAATAGATCATCTCGTCGATTGTTTTAGACATGGTGATTG 897
Query 901 TGTGAGCCTCGCTGAGAGGCCATGGAGGCATATATGATATAT---TTGGATAGAGATTCT 957
|||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||
Sbjct 898 TGTGAGCCTCGCTGAGAGGCCATGGAGGCATATATGATAT-TGGGTTGGCGAGAGAGTCT 956
Query 958 AATCCAGTTTCGGTTTAAAACATAT 982
||||||||||| ||||||||||||
Sbjct 957 AATCCAGTTTCTCTTTAAAACATAT 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5