BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13640.1
Length=2489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471527 jgi|Araly1|471527|fgenesh2_kg.1__1481__AT1G13640.1 3552 0.0
Ahg484301 jgi|Araly1|484301|fgenesh2_kg.5__293__AT2G03890.1 1375 0.0
> Ahg471527 jgi|Araly1|471527|fgenesh2_kg.1__1481__AT1G13640.1
Length=2375
Score = 3552 bits (1923), Expect = 0.0
Identities = 2263/2417 (94%), Gaps = 63/2417 (3%)
Strand=Plus/Plus
Query 1 TGAGAGTTAAAAAAGCGTCGTTGAGAGGTTAGAGACGAAGGAAGGAGGCAGAGGATAGAG 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1 TGAGAGTTAAAAAAGCGTCGTTGAGAGGTTAGAGACGAAGAAAGGAGGCAGA-GAT---- 55
Query 61 AGATAGCGAGGCTAATGGATCAGTGACTCACTGAGTCAGATTTTACCGATTCATTGCCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 AGATAGCGAGGCTAATGGATCAGTGACTCACTGAGTCAGATTTTACCGATTCATTGCCTC 115
Query 121 CATTGAAGCCTCTTTTCTCAGATTCTACGCTTCACTGTCTCTTCTCCATGTGCGTCTCCT 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 116 CATTGAAGCCTCTTCTCTCAGATTCTACGCTTCACTGTCTCTTCTCCATGTGCG------ 169
Query 181 CCTCCTCCGTTTCTTCAGATCTTGCTT-TCCGGTGACGGTTTTAATCTTCTTCTCTCTGG 239
| | ||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 170 -----T-C---TCTTCAGATCTTG-TTCTCCGGTGACGATTTTAATCTTCTTCTCTCTGG 219
Query 240 TAACACGTATAAAGCATGGCTTACCTGATGTAGACATGTAGTGTTAGGCTAAAGACTCCT 299
|| ||| |||||||||||||||||| | | ||||||||| ||| ||||| || |
Sbjct 220 TACCACCTATAAAGCATGGCTTACC-----T-G--ATGTAGTGTCAGGGTAAAGGTTCTT 271
Query 300 CTTTTCACTTCTGTCTTGTTGAGTTTGTGTTGGTTTAAGGCTTTAAGCCAAAGGCGTTGT 359
||||||||||||||| || ||| | |||||||||||| | | | ||||||||||
Sbjct 272 GTTTTCACTTCTGTCTGGTGGAGCTCGTGTTGGTTTAA-G-----A--CGAAGGCGTTGT 323
Query 360 TGGTCTGACA-AGATGGCAATGGCGGTGTTTAAGGCTCCTCTAAAAGGGGAATTTCATGG 418
|| ||||| | ||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 324 TGTTCTGA-AGAGATGGCAATGGCAGTGTTTAAGGCTCCTCTTAAAGGGGAATTTCATGG 382
Query 419 GGCTAGAAAGATGGAAGGGAAGCAATATAAGCACCATCTGCTTCAGCAACAGTCTACAGG 478
||||||||||||||||||||| || |||||||| ||||| ||||||||||||||| ||||
Sbjct 383 GGCTAGAAAGATGGAAGGGAAACAGTATAAGCATCATCTTCTTCAGCAACAGTCTTCAGG 442
Query 479 GAGAAGACGTGTGTTCGTGCAAACCGATACTGGCTGTGTGTTGGGAGTTGAGTTGGATCG 538
||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 443 GAGGAGACGTGTTTTCGTGCAAACCGAAACTGGCTGTGTTTTGGGAGTTGAGTTGGATCG 502
Query 539 TAATGACAATGTTCATACTGTGAAGAAAAGGCTTCAGATTGCGTTTAACTTTCCTACTGA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TAATGACAATGTTCATACTGTGAAGAAAAGGCTTCAGATTGCGTTTAACTTTCCTACTGA 562
Query 599 GGAAAGCTCTTTGACCTTTGGGGATATGGTGTTGAAGAATGACTTGAGTGCTGTGAGGAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 GGAAAGCTCTTTGACCTTTGGGGATATGGTGTTGAAGAATGACTTGAGTGCTGTGAGGAA 622
Query 659 TGATTCTCCGCTTCTCTTAAAGCGTAACTTAATGCACAGAAGCTCTTCTACTCCGTGTCT 718
|||||| ||||||||| | ||||||||||||||||||||||| || ||||||||||||||
Sbjct 623 TGATTCACCGCTTCTCCTGAAGCGTAACTTAATGCACAGAAGTTCGTCTACTCCGTGTCT 682
Query 719 TTCACCTACTGGGAATGATCTGCAGAGGAAAGATCGAAGTGGTCCTATTGAGATACTTAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TTCACCTACTGGGAATGATCTGCAGAGGAAAGATCGAAGTGGTCCTATTGAGATACTTAG 742
Query 779 TCACTCGCCCTGTTTTCTGTCTTTGAAGCAAACAGCGAATGACATTGTTAAGGCGATGAA 838
|||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 743 TCACTCGCATTGCTTTATGTCTTTGAAGCAAACTGCGAATGACATTGTTAAGGCGATGAA 802
Query 839 GATGGGTGTTGAACCAATCCCTGTTAATGGTGGGCTTGGAGGGGCATACTATTTTAGGGA 898
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 803 GATGGGTGTTGAACCAATCCCTGTCAATGGTGGGCTTGGAGGGGCATACTATTTTAGGAA 862
Query 899 TGAAAAGGGTCAAAGTGTTGCTATTGTCAAGCCTACGGATGAAGAGCCGTTTGCCCCTAA 958
||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 863 TGAAATGGGTCAAAGCGTTGCTATTGTCAAGCCTACGGATGAAGAACCGTTTGCTCCTAA 922
Query 959 CAATCCTAAAGGCTTCGTAGGGAAAGCGCTTGGGCAGCCTGGTTTAAAGCCTTCTGTGCG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 CAATCCTAAAGGCTTCGTAGGGAAAGCGCTTGGGCAGCCTGGTTTAAAGCCTTCTGTGCG 982
Query 1019 GGTTGGGGAAACCGGGTTTAGAGAAGTTGCTGCATACCTTCTTGATTATGATCACTTTGC 1078
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 983 AGTTGGGGAAACCGGGTTTAGAGAAGTTGCTGCTTACCTTCTTGATTATGATCACTTTGC 1042
Query 1079 TAATGTTCCTCCTACGGCTCTTGTGAAGATAACACACTCTGTTTTCAATGTCAATGATGG 1138
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TAATGTTCCTCCCACGGCTCTTGTGAAGATAACACACTCTGTTTTCAATGTCAATGATGG 1102
Query 1139 AATGGATGGGAACAAATCTCGTGAGAAGAAGAAGCTGGTCAGCAGCAAGATTGCTTCGTT 1198
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1103 AATGGACGGGAACAAATCTCGTAAGAAGAAGAAGCTGGTCAGCAGCAAGATTGCTTCGTT 1162
Query 1199 CCAGAAGTTTGTACCTCATGATTTTGATGCCAGTGATCACGGGACTTCAAGCTTCCCTGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CCAGAAGTTTGTACCTCATGATTTTGATGCCAGTGATCACGGGACTTCAAGCTTCCCTGT 1222
Query 1259 CGCTTCTGTGCACCGCATTGGGATTTTGGACATAAGGATTCTCAACACAGACCGGCATGG 1318
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1223 CGCTTCTGTGCACCGCATTGGGATATTGGACATAAGGATTCTCAACACAGACCGGCATGG 1282
Query 1319 TGGAAATCTTTTGGTGAAGAAGCTTGATGATGGTGGTGTTGGGAGGTTTGGTCAAGTGGA 1378
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 TGGAAACCTTTTGGTGAAGAAGCTTGATGATGGTGGTGTTGGGAGGTTTGGTCAAGTGGA 1342
Query 1379 GCTTATTCCAATAGATCATGGTCTTTGCTTACCAGAAACACTCGAAGATCCTTACTTCGA 1438
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1343 GCTTATTCCAATAGATCATGGTCTTTGCTTACCAGAAACACTTGAAGATCCTTACTTCGA 1402
Query 1439 ATGGATTCATTGGCCTCAGGCTTCAATACCTTTCTCTGAAGAAGAACTTGACTACATACA 1498
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1403 ATGGATTCATTGGCCTCAGGCTTCACTACCTTTCTCTGAAGAAGAACTTGACTACATACA 1462
Query 1499 AAGTCTTGATCCAGTGAAAGATTGTGAAATGCTTCGAAGAGAGCTTCCGATGATTCGAGA 1558
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1463 AAGTCTTGATCCAGTGAAAGATTGTGAAATGCTTCGAAGAGAGCTTCCAATGATTCGAGA 1522
Query 1559 GGCTTGTCTCAGGGTTCTAGTTCTCTGTACCGT-TTTCCTTAAAGAAGCTGCTGTTTTTG 1617
|||||||||||||||||||||||| ||||| || |||| | |||||||||||||||||||
Sbjct 1523 GGCTTGTCTCAGGGTTCTAGTTCTGTGTACTGTATTTC-TCAAAGAAGCTGCTGTTTTTG 1581
Query 1618 GACTTTGTCTTGCAGAGATCGGTGAGATGATGACTCGAGAATTTCGTGCAGGAGAAGAGG 1677
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1582 GACTTTGTCTTGCAGAGATTGGTGAGATGATGACTCGAGAATTTCGTGCAGGAGAAGAAG 1641
Query 1678 AACCAAGTGAACTAGAAATGTTGTGTATCGAAGCCAAGAGATTAACCACTGAACAAGACG 1737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1642 AACCAAGTGAACTAGAAATGTTGTGTATCGAAGCCAAGAGATTAACCACTGAACAAGATG 1701
Query 1738 TTTTGTCTCCCAAGTCAGATGGAGAAGGAGAGACAGAGTTTCAGTTTGATATAGACTACA 1797
|||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct 1702 TTTTATCTCCCAAGTCAGATGTAGAAGGAGAAACAGAGTTTCAGTTTGACATAGACTACA 1761
Query 1798 ATGAGCTAGACTCGGTTTATGGCTCTGAGACAGAAACCGATGAGTTCTTCGCCAAGAACC 1857
|||| ||||||| |||||||||||||||||||| ||||| ||||||||| ||||||||||
Sbjct 1762 ATGACCTAGACTTGGTTTATGGCTCTGAGACAGGAACCGTTGAGTTCTTTGCCAAGAACC 1821
Query 1858 CATTTTCAAACGGACGTTCTTCACTTGGAGAGCTCAAAGAGAGCATTGCTGAAGAAGAAG 1917
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1822 CATTTTCAAACGGATGTTCTTCACTTGGAGAGCTCAAAGAGAGCATTGCGGAAGAAGAAG 1881
Query 1918 AAGATGACGAAGAGGAGGCAAAACTTACTCTATCTCTCTCAAAGCTTTCCACATCAATGA 1977
|||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1882 AAGACGACAAAGATGAGGCAATACTTACTCTATCTCTCTCAAAGCTTTCCACATCAATGA 1941
Query 1978 AGAACAA---TCTAAGCAACACCATGGGATCCGGATACCTGAAACCTCCGAAAGACAACC 2034
||||||| ||||||||||||||||||||| ||| ||||||||||||||| |||||||
Sbjct 1942 AGAACAACAATCTAAGCAACACCATGGGATCTGGACACCTGAAACCTCCGAGAGACAACA 2001
Query 2035 AAACCGACAAAGCATTGGTAAGTCACAAGAGCGCGAACGTGCAGCTCCC-GCTTAGCGTA 2093
|||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 2002 AAACTGACAAAGCATTGGTAAGTCACAAGAGCGCGAACGTGCAGCTCCCTG-TTAGCGCA 2060
Query 2094 AACTTTGTGAAGTTAGCCGACATGAAAGAAGTTGAATGGGTTGTGTTCTTGGAGAGGTTT 2153
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2061 AACTTTGTGAAGTTAGCGGACATGAAAGAAGTTGAATGGGTTGTGTTCTTGGAGAGGTTT 2120
Query 2154 CAGGAGTTGCTTTACTCGGCTTTTGCAGAACGCAAGACCATGACGTTGAGGAACACACAG 2213
|||||||||||| |||||||||||||||| ||||||||| |||||||||||||||| |||
Sbjct 2121 CAGGAGTTGCTTCACTCGGCTTTTGCAGAGCGCAAGACCCTGACGTTGAGGAACACGCAG 2180
Query 2214 AGACTTGGTACATCGTGCAAGTTTTGAGATCATA---C-----GAGTTCACATAAGAGAA 2265
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 2181 AGACTTGGTACATCGTGCAAGTTTTGAGATCATATGACTATATGAGTTCACATAGGAGAA 2240
Query 2266 GACCAAAGATTTCACTTTTACGAGTT---TT--GAAGCAATTACTTGTTAGCTACGTTAA 2320
||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 2241 TACCAAAGATTTTACTTTCACGAGTTGAGTTTTGAAGCAATTACTTGTTAGCTACGTTAA 2300
Query 2321 GATTAGTTTACTTTTGTAGCGA-CCACGAGCACTTGCAATGTGAAGAAATGTTTATTTTG 2379
|||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||||
Sbjct 2301 GATTAGTTTACTTTTGTAGC-ATCCACGAGCACTTGCAACGTGAAGAAATGTTT-TTTTG 2358
Query 2380 CCTGTAAATATTCTTTA 2396
|||||||||||||||||
Sbjct 2359 CCTGTAAATATTCTTTA 2375
> Ahg484301 jgi|Araly1|484301|fgenesh2_kg.5__293__AT2G03890.1
Length=2750
Score = 1375 bits (744), Expect = 0.0
Identities = 1300/1560 (83%), Gaps = 71/1560 (5%)
Strand=Plus/Plus
Query 416 TGGGGCTAGA-AAGATGGAAGGGAAGCA--AT-ATAAGCACCATC-TGCTTCAGCA-ACA 469
|||||||| | ||||||||||||||||| || |||| || || | | |||||| | ||
Sbjct 540 TGGGGCTA-ATAAGATGGAAGGGAAGCAGCATCATAAACATCAGCAT-CTTCAG-AGGCA 596
Query 470 GTCTA-CAGGGAGAAGACGTGTGTTCGTGCAAACCGATACTGGCTGTGTGTT-GGGAGTT 527
|| | | ||| | || || || ||||||||||| || ||||| ||||| || |||| |
Sbjct 597 ATC-ATC-GGG-G-AGGCGGGTTTTCGTGCAAACTGAAACTGGTTGTGTTTTGGGGA-TG 651
Query 528 GAGTTGGATCGTAATGACAATGTTCATACTGTGAAGAA-AAGGCTTCAGATTGCGT-TTA 585
||||||||||||| ||| |||||||||||||| || || |||||||||||||| | |||
Sbjct 652 GAGTTGGATCGTAGTGATAATGTTCATACTGTTAA-AAGGAGGCTTCAGATTGC-TCTTA 709
Query 586 ACTTT-CCTACTGAGGAAAGCTCTTTGACCTT-TGGGGATATGGTGTTGAAGAATGACTT 643
| ||| || ||||||||||| ||||||| ||| ||| ||||||||||||| |||||| ||
Sbjct 710 A-TTTCCCGACTGAGGAAAGTTCTTTGA-CTTATGGTGATATGGTGTTGACGAATGATTT 767
Query 644 GAGTGCTGTGAGGAATGATTCTCCGCTTCT-CTTAAAGCGTAACTTAATGCACAGAAGCT 702
|||||||||||||||||||||||||||||| || | | || || || ||||| |||||||
Sbjct 768 GAGTGCTGTGAGGAATGATTCTCCGCTTCTGCTGAGA-CGGAATTTTATGCATAGAAGCT 826
Query 703 CTTCTACTCCGTGTCTTTCACCTACTGGGAATGATCTGC-AGAGGAAAGATCGAAGTGGT 761
| |||||||| |||||||| |||||||||| ||| ||| | | |||||| |||||||||
Sbjct 827 CGTCTACTCCTTGTCTTTCGCCTACTGGGAGGGATTTGCAACA-GAAAGACCGAAGTGGT 885
Query 762 CCTATTGAGATACTTA-GTCACTCGCCCTG-TTTTCTGTCTT-TGAAGCAAACAGCGAAT 818
|||||||||||| ||| | || ||| || ||||| | || | || || | | |||
Sbjct 886 CCTATTGAGATA-TTAGGCCATTCGGATTGCTTTTC-G-ATTGTTAAACATATGGTGAAG 942
Query 819 GACATTGTTAAGGCGATGAAGATGGGTGTTGAACCAATCCCTGTTAATGGTGGGCTTGGA 878
|| |||||||||||||||||||||||||||||||| | |||||| || |||||||||||
Sbjct 943 GATATTGTTAAGGCGATGAAGATGGGTGTTGAACCGCTTCCTGTTCATAGTGGGCTTGGA 1002
Query 879 GGGGCATACTATTTTAGGGATGAAAAGGG-TCAAAGTGTTGCTATTGTCAAGCCTACGGA 937
|| ||||| ||||||||| | ||||||| | | |||||||| ||||||||||| || ||
Sbjct 1003 GGTGCATATTATTTTAGGAAC-AAAAGGGGTGAGAGTGTTGCGATTGTCAAGCCGACAGA 1061
Query 938 TGAAGAGCCGTTTGCCCCTAACAATCCTAAAGGCTTCGTAGGGAAAGCGCTTGGGCAGCC 997
||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1062 TGAAGAGCCGTTTGCACCTAACAATCCTAAAGGCTTTGTTGGGAAAGCCCTTGGGCAGCC 1121
Query 998 TGGTTTAAAGCCTTCTGTGCGGGTTGGGGAAACCGGGTTTAGAGAAGTTGCTGCATACCT 1057
||| |||||| |||| ||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1122 TGGATTAAAGTCTTCGGTGCGAGTTGGGGAAACCGGGTTTAGAGAAGTTGCTGCTTATCT 1181
Query 1058 TCTTGATTATGATCACTTTGCTAATGTTCCTCCTACGGCTCTTGTGAAGATAACACACTC 1117
||||||||||| || |||||||||||| ||||| || ||||||||||||||||| || ||
Sbjct 1182 TCTTGATTATGGTCGCTTTGCTAATGTCCCTCCCACTGCTCTTGTGAAGATAACTCATTC 1241
Query 1118 TGTTTTCAATGTCAATGATGGAATGGATGGGAACAAATCTCGTGAGAAGAAGAAGCTGGT 1177
||| ||||||||||||||||| || | |||||||| |||| | || ||||||||||||
Sbjct 1242 TGTATTCAATGTCAATGATGGGGTGAAGGGGAACAAGCCTCG-G-GA-GAAGAAGCTGGT 1298
Query 1178 CAGCAGCAAGATTGCTTCGTTCCAGAAGTTTGTACCTCATGATTTTGATGCCAGTGATCA 1237
| | ||||||||||| |||||||||||||| |||||||||| ||||| ||||||||
Sbjct 1299 TA--AT-AAGATTGCTTCTTTCCAGAAGTTTGTGGCTCATGATTTCGATGCAAGTGATCA 1355
Query 1238 CGGGACTTCAAGCTTCCCTGTCGCTTCTGTGCACCGCATTGGGATTTTGGACATAAGGAT 1297
|| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 1356 TGGTACTTCAAGCTTCCCTGTAGCTTCTGTGCACCGCATTGGTATATTGGACATAAGGAT 1415
Query 1298 TCT-CAACACAGACCGGCATGGTGGAAATCTTTTGGTGAAGAAGCTTGATGATGGTGGTG 1356
|| ||||||||| || |||||||| ||||||||||||||||||||||||| || | |
Sbjct 1416 -CTTCAACACAGATCGTCATGGTGGGAATCTTTTGGTGAAGAAGCTTGATG--GG-G-TC 1470
Query 1357 TTGGGAGGTTTGGTCAAGTGGAGCTTATTCCAATAGATCATGGTCTTTGCTTACCAGAAA 1416
|| | ||||||||||||||||||||||||||| || |||||||| ||| | |||||||
Sbjct 1471 --GGAATGTTTGGTCAAGTGGAGCTTATTCCAATTGACCATGGTCTCTGCCTGCCAGAAA 1528
Query 1417 CACTCGAAGATCCTTACTTCGAATGGATTCATTGGCCTCAGGCTTCAATACCTTTCTCTG 1476
|||| || |||||||| || || |||||||||||||||||||| ||| |||| |||||||
Sbjct 1529 CACTTGAGGATCCTTATTTTGAGTGGATTCATTGGCCTCAGGCATCATTACCATTCTCTG 1588
Query 1477 AAGAAGAACTTGACTACATACAAAGTCTTGATCCAGTGAAAGATTGTGAA-ATGCTTCGA 1535
| ||||| ||||||||||||||||||||||||||| || |||| ||| || |||||| ||
Sbjct 1589 ATGAAGAGCTTGACTACATACAAAGTCTTGATCCATTGGAAGACTGT-AACATGCTTAGA 1647
Query 1536 AGAGAGCTTCCGATGATTCGAGAGGCTTGTCT-CAGGGTTCTAGTTCTCTGTACCGTTTT 1594
||||| ||||| |||||| ||||||| ||||| | ||||||| ||||||||||| ||||
Sbjct 1648 AGAGAACTTCCAATGATTAGAGAGGCGTGTCTTC-GGGTTCTTGTTCTCTGTACTATTTT 1706
Query 1595 CCTTAAAGAAGCTGCTGTTTT-TGGACTTTGTCTTGCAGAGATCGGTGAGATGATGACTC 1653
|| |||||||||||| | || ||| || |||||||| ||||| || |||||||||||||
Sbjct 1707 TCTCAAAGAAGCTGCT-TCTTATGGGCTGTGTCTTGCTGAGATTGGCGAGATGATGACTC 1765
Query 1654 GAGAATTTCGTGCAGGAGAAGAGGAACCAAGTGAACTAGAAAT-GTTGTGTATCGAAGCC 1712
| |||||||| |||||||||| || ||||||||||| || | || |||||| ||||||
Sbjct 1766 GGGAATTTCGACCAGGAGAAGAAGAGCCAAGTGAACTGGAGGTTGT-GTGTATTGAAGCC 1824
Query 1713 AAGAGATTAACCACTGAACAAGACGTTTTGTCTCCCAAG-TCAGATGGAGAAGGAGA-GA 1770
||||||| | |||||||| || ||||| ||||| ||| ||||||| || |||||| |
Sbjct 1825 AAGAGATCAGTCACTGAACGCGATGTTTTCTCTCC-AAGGTCAGATGTAGTAGGAGAAG- 1882
Query 1771 CAGAGTTTCAGTTTGATATAGACTACAATGAGCTAGACTCGGTTTATGGCTCTGAGACAG 1830
||||||||||||| ||| |||||| |||| |||| || || || | || ||| |
Sbjct 1883 CAGAGTTTCAGTTCGATCTAGACTGTGATGATTTAGAATCAGTCTACAGTTCCAAGATAC 1942
Query 1831 AA--A-CCGATGAGTTCTTCGCCAAGAACCCATTTTCAAACGGACGTTCTTCACTTGGAG 1887
|| | ||||||| | |||| |||| ||||| ||||||||||||||||||||||| || |
Sbjct 1943 AACTAACCGATGACTACTTCACCAAAAACCCTTTTTCAAACGGACGTTCTTCACTCGG-G 2001
Query 1888 A-GCTCAAAGAGAGCATTGCTGAAGAAGAAGAAGATGACGAAGA-G--GAGG-CAAAACT 1942
| ||| |||| ||||| ||||||||||||||||| ||||| | |||| |||||||
Sbjct 2002 AAGCTTGAAGAAAGCATCAAGGAAGAAGAAGAAGATGATGAAGAAGAAGAGGACAAAACT 2061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93816273435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5