BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13650.2 Length=1194 Score E Sequences producing significant alignments: (Bits) Value Ahg312374 jgi|Araly1|312374|fgenesh1_pm.C_scaffold_1001154 946 0.0 > Ahg312374 jgi|Araly1|312374|fgenesh1_pm.C_scaffold_1001154 Length=900 Score = 946 bits (512), Expect = 0.0 Identities = 735/840 (88%), Gaps = 25/840 (3%) Strand=Plus/Plus Query 236 GAAACCTTTCGGATCCAAAATCTCAGACAACAACGAAATTGAAGAACTTGATCAAGAGAA 295 ||||||||| ||||||||||||||||| || ||||||||||||| |||||||||||| Sbjct 66 GAAACCTTTTGGATCCAAAATCTCAGATTTCAGCGAAATTGAAGAATTTGATCAAGAGAC 125 Query 296 TTTGGTTGTGACAAGACAAGAAGTTAATGATGATTCCAAAGTGGCACCGAGAGATGTAGT 355 |||| |||||||||| ||||||| ||| ||||||||||||||||||||||| || |||| Sbjct 126 TTTGATTGTGACAAGTCAAGAAGCTAAGGATGATTCCAAAGTGGCACCGAGGGACATAGT 185 Query 356 AGCTACATCAACAAGTGTCTCTAAGAAGGCTTTAACCTTGGGAGATATTTTATCATTGGA 415 |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 186 AGCTACATCAACAAATGTCTCTAAGAAGGCTTTAACCATGGGAGATATTTTATCAATGGA 245 Query 416 GGATTCCCAAAGCCCACCCAACAAAAACAACACTAATGGACCTGAAGAAAACATGGTCCA 475 ||||||||||| |||||||||||||| |||||| ||||||||||||||||||| ||||| Sbjct 246 GGATTCCCAAATACCACCCAACAAAAATAACACTCATGGACCTGAAGAAAACATAGTCCA 305 Query 476 TCAT-A-AC-C--C--------AC-----ATCTGGAGATAACAGAGGAATCAGAAGCAGA 517 |||| | || | | || | | |||||||||||||||| |||||||||| Sbjct 306 TCATGACACACAACTGGAGATAACAGAGGAACCGGAGATAACAGAGGAACCAGAAGCAGA 365 Query 518 CAACTCTTGTGATGACAACAATCTCTTGAAAAGGAATCTCCCAAATGGTTTCGGGGAAAT 577 ||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||| Sbjct 366 CAACTTTTGTGATG---ACAATCTCTTGTCAAGGAATCTCCCAAATGGTTTCAGGGAAAT 422 Query 578 AAGTT-TCTGTGAAGCAAAGTCGAGTTTAGATTATATTACTTACTGTGGACCACTCTCAG 636 ||||| | |||||||| |||| ||||||| |||||| ||||||||||||||| |||| Sbjct 423 AAGTTAT-TGTGAAGCTGAGTCAAGTTTAGCTTATATAACTTACTGTGGACCAAGATCAG 481 Query 637 GCTCCGAAAACCTCTCTATTCGTTCTGATGGAACCAGCGCAAGCTCTTTTGCTCTCCCAA 696 ||||||||||||||||| ||||||||||||||||||||||||||||||| | | |||||| Sbjct 482 GCTCCGAAAACCTCTCTTTTCGTTCTGATGGAACCAGCGCAAGCTCTTTCGTTTTCCCAA 541 Query 697 TACTGCAATCGGAGTGGAACAGCAGTCCTGTAAGAATGGGGAAAGCTGAGGAGACGCAAC 756 ||| |||||||||||||||||| |||||||||||| |||| |||||||||||||| |||| Sbjct 542 TACCGCAATCGGAGTGGAACAGGAGTCCTGTAAGAGTGGGTAAAGCTGAGGAGACACAAC 601 Query 757 TTCGAATGGTGATAGCTGAGGAGAGAAAAGTTCGAAA-GGATAAAGCTGAGAAGACACAA 815 |||||||||||| ||||||||||| |||| ||| ||| || |||||||| | ||||||| Sbjct 602 TTCGAATGGTGAAAGCTGAGGAGACAAAACTTC-AAATGGGGAAAGCTGATAGGACACAA 660 Query 816 CTTCGAAAGGAGAAAGCTGAGGAGTCACAACTTCGAGAGGTGAAAGCTGAGGAGACTCAA 875 |||||| || |||||||||||| | ||||| | | ||| ||||||||||||||||||| Sbjct 661 CTTCGAGTGGTGAAAGCTGAGGACACTCAACTCCAAAAGGAGAAAGCTGAGGAGACTCAA 720 Query 876 CTTCGAATGGTGAAAGCTGAGGAGACTCAACTTCGAAAGGAGAAAGCTGAGGAAACACAA 935 |||| || || ||||||||||||||| |||||||||| || || ||||||||| | |||| Sbjct 721 CTTCAAAAGGAGAAAGCTGAGGAGACACAACTTCGAATGGTGATAGCTGAGGAGAGACAA 780 Query 936 CTTCGAATGGTGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGATGAGAAGAGACAA 995 ||||||| || || |||||||||||||||| ||||||||||||||| | ||||||||||| Sbjct 781 CTTCGAAAGGAGAAAGCTGAGGAGAGACAAATTCGAAAGGAGAAAGCTAAGAAGAGACAA 840 Query 996 CTTCGAAAGGGGAAGAAAGGATGGAGACATTACTCTTCTCTTCTCTGTTGTAGATTCTGA 1055 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 841 CTTCGAAAGGAGAAGAAAGGATGGAGACATTACTCCTCTCTTCTCTGTTGTAGATTCTGA 900 Score = 294 bits (159), Expect = 8e-79 Identities = 217/244 (89%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 770 AGCTGAGGAGAGAAAAGTTCGAAAGGAT-AAAGCTGAGAAGACACAACTTCGAAA-GGAG 827 ||||||||||| | || |||||| || | ||||||||| ||||| |||||| ||| || | Sbjct 585 AGCTGAGGAGACACAACTTCGAATGG-TGAAAGCTGAGGAGACAAAACTTC-AAATGGGG 642 Query 828 AAAGCTG--AGGAGTCACAACTTCGAGAGGTGAAAGCTGAGGAGACTCAACTTCGAATGG 885 ||||||| |||| |||||||||||| ||||||||||||||| |||||||| | || || Sbjct 643 AAAGCTGATAGGA--CACAACTTCGAGTGGTGAAAGCTGAGGACACTCAACTCCAAAAGG 700 Query 886 TGAAAGCTGAGGAGACTCAACTTCGAAAGGAGAAAGCTGAGGAAACACAACTTCGAATGG 945 ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 701 AGAAAGCTGAGGAGACTCAACTTCAAAAGGAGAAAGCTGAGGAGACACAACTTCGAATGG 760 Query 946 TGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGATGAGAAGAGACAACTTCGAAAGG 1005 |||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| Sbjct 761 TGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGCTGAGGAGAGACAAATTCGAAAGG 820 Query 1006 GGAA 1009 ||| Sbjct 821 AGAA 824 Score = 156 bits (84), Expect = 4e-37 Identities = 110/123 (89%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 737 GAAAGCTGAGGAGACGCAACTTCGAATGGTGATAGCTGAGGAGAGAAAAGTTCGAAAGGA 796 ||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||| Sbjct 732 GAAAGCTGAGGAGACACAACTTCGAATGGTGATAGCTGAGGAGAGACAACTTCGAAAGGA 791 Query 797 TAAAGCTGAGAAGACACAACTTCGAAAGGAGAAAGCTGAGGAGTCACAACTTCGAGAGGT 856 ||||||||| ||| |||| ||||||||||||||||| || || |||||||||| ||| Sbjct 792 GAAAGCTGAGGAGAGACAAATTCGAAAGGAGAAAGCTAAGAAGAGACAACTTCGAAAGGA 851 Query 857 GAA 859 ||| Sbjct 852 GAA 854 Score = 154 bits (83), Expect = 1e-36 Identities = 135/159 (85%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 854 GGTGAAAGCTGAGGAGACTCAACTTCGAATGGTGAAAGCTGAGGAGACTCAACTTCGAAA 913 ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| Sbjct 580 GGT-AAAGCTGAGGAGACACAACTTCGAATGGTGAAAGCTGAGGAGACAAAACTTC-AAA 637 Query 914 -GGAGAAAGCTGA--GGAAACACAACTTCGAATGGTGATAGCTGAGGAGAGACAACTTCG 970 || ||||||||| ||| ||||||||||| |||||| ||||||||| | ||||| | Sbjct 638 TGGGGAAAGCTGATAGGA--CACAACTTCGAGTGGTGAAAGCTGAGGACACTCAACTCCA 695 Query 971 AAAGGAGAAAGATGAGAAGAGACAACTTCGAAAGGGGAA 1009 ||||||||||| |||| ||| ||||||| ||||| ||| Sbjct 696 AAAGGAGAAAGCTGAGGAGACTCAACTTCAAAAGGAGAA 734 Score = 145 bits (78), Expect = 9e-34 Identities = 129/154 (84%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 737 GAAAGCTGAGGAGACGCAACTTCGAATGGTGATAGCTGAGGAGAGAAAAGTTCGAAAGGA 796 ||||||||||||||| ||||||| || || || ||||||||||| | || |||||| || Sbjct 702 GAAAGCTGAGGAGACTCAACTTCAAAAGGAGAAAGCTGAGGAGACACAACTTCGAATGG- 760 Query 797 T-AAAGCTGAGAAGACACAACTTCGAAAGGAGAAAGCTGAGGAGTCACAACTTCGAGAGG 855 | | ||||||| ||| |||||||||||||||||||||||||||| |||| ||||| ||| Sbjct 761 TGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGCTGAGGAGAGACAAATTCGAAAGG 820 Query 856 TGAAAGCTGAGGAGACTCAACTTCGAATGGTGAA 889 ||||||| || ||| |||||||||| || ||| Sbjct 821 AGAAAGCTAAGAAGAGACAACTTCGAAAGGAGAA 854 Score = 73.1 bits (39), Expect = 4e-12 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 195 ATGCCTGCATACATTTCTGAGGAGAAGTTGTTCTTCAACAAGAAA 239 ||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTGCCTACATTTCTGAGGAGAAGTTGTTCTTCAACAAGAAA 45 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44565689973 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5