BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13650.2
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312374 jgi|Araly1|312374|fgenesh1_pm.C_scaffold_1001154 946 0.0
> Ahg312374 jgi|Araly1|312374|fgenesh1_pm.C_scaffold_1001154
Length=900
Score = 946 bits (512), Expect = 0.0
Identities = 735/840 (88%), Gaps = 25/840 (3%)
Strand=Plus/Plus
Query 236 GAAACCTTTCGGATCCAAAATCTCAGACAACAACGAAATTGAAGAACTTGATCAAGAGAA 295
||||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct 66 GAAACCTTTTGGATCCAAAATCTCAGATTTCAGCGAAATTGAAGAATTTGATCAAGAGAC 125
Query 296 TTTGGTTGTGACAAGACAAGAAGTTAATGATGATTCCAAAGTGGCACCGAGAGATGTAGT 355
|||| |||||||||| ||||||| ||| ||||||||||||||||||||||| || ||||
Sbjct 126 TTTGATTGTGACAAGTCAAGAAGCTAAGGATGATTCCAAAGTGGCACCGAGGGACATAGT 185
Query 356 AGCTACATCAACAAGTGTCTCTAAGAAGGCTTTAACCTTGGGAGATATTTTATCATTGGA 415
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 186 AGCTACATCAACAAATGTCTCTAAGAAGGCTTTAACCATGGGAGATATTTTATCAATGGA 245
Query 416 GGATTCCCAAAGCCCACCCAACAAAAACAACACTAATGGACCTGAAGAAAACATGGTCCA 475
||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||
Sbjct 246 GGATTCCCAAATACCACCCAACAAAAATAACACTCATGGACCTGAAGAAAACATAGTCCA 305
Query 476 TCAT-A-AC-C--C--------AC-----ATCTGGAGATAACAGAGGAATCAGAAGCAGA 517
|||| | || | | || | | |||||||||||||||| ||||||||||
Sbjct 306 TCATGACACACAACTGGAGATAACAGAGGAACCGGAGATAACAGAGGAACCAGAAGCAGA 365
Query 518 CAACTCTTGTGATGACAACAATCTCTTGAAAAGGAATCTCCCAAATGGTTTCGGGGAAAT 577
||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 366 CAACTTTTGTGATG---ACAATCTCTTGTCAAGGAATCTCCCAAATGGTTTCAGGGAAAT 422
Query 578 AAGTT-TCTGTGAAGCAAAGTCGAGTTTAGATTATATTACTTACTGTGGACCACTCTCAG 636
||||| | |||||||| |||| ||||||| |||||| ||||||||||||||| ||||
Sbjct 423 AAGTTAT-TGTGAAGCTGAGTCAAGTTTAGCTTATATAACTTACTGTGGACCAAGATCAG 481
Query 637 GCTCCGAAAACCTCTCTATTCGTTCTGATGGAACCAGCGCAAGCTCTTTTGCTCTCCCAA 696
||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||
Sbjct 482 GCTCCGAAAACCTCTCTTTTCGTTCTGATGGAACCAGCGCAAGCTCTTTCGTTTTCCCAA 541
Query 697 TACTGCAATCGGAGTGGAACAGCAGTCCTGTAAGAATGGGGAAAGCTGAGGAGACGCAAC 756
||| |||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||
Sbjct 542 TACCGCAATCGGAGTGGAACAGGAGTCCTGTAAGAGTGGGTAAAGCTGAGGAGACACAAC 601
Query 757 TTCGAATGGTGATAGCTGAGGAGAGAAAAGTTCGAAA-GGATAAAGCTGAGAAGACACAA 815
|||||||||||| ||||||||||| |||| ||| ||| || |||||||| | |||||||
Sbjct 602 TTCGAATGGTGAAAGCTGAGGAGACAAAACTTC-AAATGGGGAAAGCTGATAGGACACAA 660
Query 816 CTTCGAAAGGAGAAAGCTGAGGAGTCACAACTTCGAGAGGTGAAAGCTGAGGAGACTCAA 875
|||||| || |||||||||||| | ||||| | | ||| |||||||||||||||||||
Sbjct 661 CTTCGAGTGGTGAAAGCTGAGGACACTCAACTCCAAAAGGAGAAAGCTGAGGAGACTCAA 720
Query 876 CTTCGAATGGTGAAAGCTGAGGAGACTCAACTTCGAAAGGAGAAAGCTGAGGAAACACAA 935
|||| || || ||||||||||||||| |||||||||| || || ||||||||| | ||||
Sbjct 721 CTTCAAAAGGAGAAAGCTGAGGAGACACAACTTCGAATGGTGATAGCTGAGGAGAGACAA 780
Query 936 CTTCGAATGGTGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGATGAGAAGAGACAA 995
||||||| || || |||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 781 CTTCGAAAGGAGAAAGCTGAGGAGAGACAAATTCGAAAGGAGAAAGCTAAGAAGAGACAA 840
Query 996 CTTCGAAAGGGGAAGAAAGGATGGAGACATTACTCTTCTCTTCTCTGTTGTAGATTCTGA 1055
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 CTTCGAAAGGAGAAGAAAGGATGGAGACATTACTCCTCTCTTCTCTGTTGTAGATTCTGA 900
Score = 294 bits (159), Expect = 8e-79
Identities = 217/244 (89%), Gaps = 8/244 (3%)
Strand=Plus/Plus
Query 770 AGCTGAGGAGAGAAAAGTTCGAAAGGAT-AAAGCTGAGAAGACACAACTTCGAAA-GGAG 827
||||||||||| | || |||||| || | ||||||||| ||||| |||||| ||| || |
Sbjct 585 AGCTGAGGAGACACAACTTCGAATGG-TGAAAGCTGAGGAGACAAAACTTC-AAATGGGG 642
Query 828 AAAGCTG--AGGAGTCACAACTTCGAGAGGTGAAAGCTGAGGAGACTCAACTTCGAATGG 885
||||||| |||| |||||||||||| ||||||||||||||| |||||||| | || ||
Sbjct 643 AAAGCTGATAGGA--CACAACTTCGAGTGGTGAAAGCTGAGGACACTCAACTCCAAAAGG 700
Query 886 TGAAAGCTGAGGAGACTCAACTTCGAAAGGAGAAAGCTGAGGAAACACAACTTCGAATGG 945
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 701 AGAAAGCTGAGGAGACTCAACTTCAAAAGGAGAAAGCTGAGGAGACACAACTTCGAATGG 760
Query 946 TGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGATGAGAAGAGACAACTTCGAAAGG 1005
|||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 761 TGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGCTGAGGAGAGACAAATTCGAAAGG 820
Query 1006 GGAA 1009
|||
Sbjct 821 AGAA 824
Score = 156 bits (84), Expect = 4e-37
Identities = 110/123 (89%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 737 GAAAGCTGAGGAGACGCAACTTCGAATGGTGATAGCTGAGGAGAGAAAAGTTCGAAAGGA 796
||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 732 GAAAGCTGAGGAGACACAACTTCGAATGGTGATAGCTGAGGAGAGACAACTTCGAAAGGA 791
Query 797 TAAAGCTGAGAAGACACAACTTCGAAAGGAGAAAGCTGAGGAGTCACAACTTCGAGAGGT 856
||||||||| ||| |||| ||||||||||||||||| || || |||||||||| |||
Sbjct 792 GAAAGCTGAGGAGAGACAAATTCGAAAGGAGAAAGCTAAGAAGAGACAACTTCGAAAGGA 851
Query 857 GAA 859
|||
Sbjct 852 GAA 854
Score = 154 bits (83), Expect = 1e-36
Identities = 135/159 (85%), Gaps = 7/159 (4%)
Strand=Plus/Plus
Query 854 GGTGAAAGCTGAGGAGACTCAACTTCGAATGGTGAAAGCTGAGGAGACTCAACTTCGAAA 913
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct 580 GGT-AAAGCTGAGGAGACACAACTTCGAATGGTGAAAGCTGAGGAGACAAAACTTC-AAA 637
Query 914 -GGAGAAAGCTGA--GGAAACACAACTTCGAATGGTGATAGCTGAGGAGAGACAACTTCG 970
|| ||||||||| ||| ||||||||||| |||||| ||||||||| | ||||| |
Sbjct 638 TGGGGAAAGCTGATAGGA--CACAACTTCGAGTGGTGAAAGCTGAGGACACTCAACTCCA 695
Query 971 AAAGGAGAAAGATGAGAAGAGACAACTTCGAAAGGGGAA 1009
||||||||||| |||| ||| ||||||| ||||| |||
Sbjct 696 AAAGGAGAAAGCTGAGGAGACTCAACTTCAAAAGGAGAA 734
Score = 145 bits (78), Expect = 9e-34
Identities = 129/154 (84%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 737 GAAAGCTGAGGAGACGCAACTTCGAATGGTGATAGCTGAGGAGAGAAAAGTTCGAAAGGA 796
||||||||||||||| ||||||| || || || ||||||||||| | || |||||| ||
Sbjct 702 GAAAGCTGAGGAGACTCAACTTCAAAAGGAGAAAGCTGAGGAGACACAACTTCGAATGG- 760
Query 797 T-AAAGCTGAGAAGACACAACTTCGAAAGGAGAAAGCTGAGGAGTCACAACTTCGAGAGG 855
| | ||||||| ||| |||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 761 TGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGCTGAGGAGAGACAAATTCGAAAGG 820
Query 856 TGAAAGCTGAGGAGACTCAACTTCGAATGGTGAA 889
||||||| || ||| |||||||||| || |||
Sbjct 821 AGAAAGCTAAGAAGAGACAACTTCGAAAGGAGAA 854
Score = 73.1 bits (39), Expect = 4e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 195 ATGCCTGCATACATTTCTGAGGAGAAGTTGTTCTTCAACAAGAAA 239
||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTGCCTACATTTCTGAGGAGAAGTTGTTCTTCAACAAGAAA 45
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5