BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13670.1
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920251 jgi|Araly1|920251|scaffold_101532.1 865 0.0
> Ahg920251 jgi|Araly1|920251|scaffold_101532.1
Length=709
Score = 865 bits (468), Expect = 0.0
Identities = 646/727 (89%), Gaps = 32/727 (4%)
Strand=Plus/Plus
Query 29 GAA-CTCAAGAAACAACAATGTCGGAGATGGCCGGAGATTCTTCAACATCAGAAGATAAA 87
||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 3 GAACCTCAAGAAACAACAATGTCGGAGATGGCTAGAGATTCTTCAACATCAGAAGAGAAA 62
Query 88 ATCCATAAACCAAACCGCGAGAGGAATGTCTCCGGCGAACTTGACGTCTTCGAAGCCACT 147
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 ATCCATAGACCAAACCGCGAGAGGAATGTCTCCGGCGAACTTGACGTCTTCGAAGCCACT 122
Query 148 CGATATTTTTCCGACTTCAACGAACCAACGACGATCGAGTACTCAAGAATCCAAATACAG 207
|||||||| ||||||||||||||||| | ||||| || | | | | ||| | ||
Sbjct 123 CGATATTTCTCCGACTTCAACGAACC-A--ACGAT-GA-T-C-C-A-AAT-----T-CAT 167
Query 208 AAACAAAGCATTGTTACAGAAAATCGACAGAAGAGAGTACACCCTGAGACAGAAGAACAC 267
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 168 AAACAAAGCATCGTTACAGAAAATCGACAGAAGAGAGTACACCCTGAGACAGAGGAACAA 227
Query 268 CTCCCTAAACCTAGAGTCGTCGTCATAAAGCCGCAGAAGAAAGAGATGACACGTGGCGGC 327
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 228 CTCCCGAAACCTAGAGTCGTCGTCATAAAGCCGCAGAAGAAGGAGATGACACGTGGCGGT 287
Query 328 GGTAAGAAGCTAACCAGTTTCTTGAACTCTCTTCTTCGCTCAGCTGGTCTAAAGAAGAAG 387
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 GGTAAGAAGCTGACAAGTTTCTTGAACTCTCTTCTTCGCTCAGCTGGTCTAAAGAAG--- 344
Query 388 TCAAAGTCAGCGCCGGAGGTGGAGACACCACGAGTAGAAAGGATGAGGAGGAAGAGCTGC 447
||||||||| | ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 345 TCAAAGTCAACTACGGAGGTGGAGACTCCACGAGGAGAAAGGATGAGGAGGAAGAGCTGC 404
Query 448 GTAGTGACTACACACGCCGCAGA-TGCTTCGCCTCTCACCAATGCCGGCGCGTGGAGTTT 506
|| || || ||||||| | || | |||| || | || ||||||||||||||||||
Sbjct 405 GTGGTAACCACACACGTTGAAGCGT-CTTCTCCAATTTCCTGTGCCGGCGCGTGGAGTTT 463
Query 507 AAACGCGCGTAGAAGAAGCTTTGATGAGAAAGA--T------TT-GAAGAAGAGTGATCA 557
|||||||||||| |||||||||||||||||||| | || |||||||||||||||
Sbjct 464 AAACGCGCGTAGGAGAAGCTTTGATGAGAAAGACGTGAAAGATTTGAAGAAGAGTGATCA 523
Query 558 GAAGTTGAACATAAGATTTTGTGAGAGTCTGTATTCGGACCAAAGGGTTGAGAC-AAAAG 616
|||| |||||||||| |||||||||||||| ||||||| ||||||||||||| ||||
Sbjct 524 GAAGCTGAACATAAGGTTTTGTGAGAGTCTCTATTCGGTCCAAAGGGTTGAGTGTAAAA- 582
Query 617 ACCCAAATGCAGGAGACAAGAACGATGTAATTGGTGGATGCGAGAGTGATTCAAGTTCTG 676
| |||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 583 ATCCAAGTGCAGGAGATGAGAATGATGTAAATGGTGGATGCGAGAGTGATTCAAGTTCTG 642
Query 677 AATCTGATCTTTTTGAGTTGGATTTGTTTGCTAAATCAAACCCCTAATTAAGAACGGTCC 736
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 643 AATCTGATCTTTTTGAGTTGGATTTGTTTGCTAAAACAAACCCCTAATGAAGAACGGTCC 702
Query 737 GGAGAAT 743
||| |||
Sbjct 703 GGAAAAT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29964612762
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5