BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13680.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334664 jgi|Araly1|334664|fgenesh1_pg.C_scaffold_1001229 1640 0.0
> Ahg334664 jgi|Araly1|334664|fgenesh1_pg.C_scaffold_1001229
Length=1041
Score = 1640 bits (888), Expect = 0.0
Identities = 992/1043 (95%), Gaps = 4/1043 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAGTTTCAAATTCTTCTTTGCAGCCATAATTTTGGTTCTGTTTCAT-CCGGCAGC 59
||||||||||||||||||| |||||||| || ||| |||||| |||||||| |||| |||
Sbjct 1 ATGGCCAGTTTCAAATTCTCCTTTGCAGTCACAATCTTGGTTATGTTTCATCCCGG-AGC 59
Query 60 AATAACTTTTGTTGCTTCGTATGGCTCATTACAGCTTGGCGATCAATGCTCATCGGACGA 119
||| |||||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 60 AATCTCTTTTGGTGCTTCCTATGGCTCATTTCAGCTCGGCGATCAATGCTCGTCGGACGA 119
Query 120 AGACTGCAATGTTGGACTTGGTTGTTTTAAATGCGGTATAGATGTTGCAAGATGCGTTAG 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 AGACTGCAATGTTGGACTTGGTTGTTTTAAATGCGGTGTAGATGTTGCAAGATGCGTTAG 179
Query 180 ATCCAATATCACAGATCAGTTCTCCATTGTGAACAATTCGATGCCGTTTAATAAATATGC 239
||| |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||
Sbjct 180 ATCAAATATCACAGATCAATTCTCCGTTGTGAACAATTCGATGCCGTTCAATAAATATGC 239
Query 240 ATTTTTGACGACCCACAATTCATATGCCATTGAAGGGAAAGCGCTTCATGTGGCGACCCA 299
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 240 ATTTTTGACGACCCACAATTCATATGCCATTGAAGGGAAACCGTTTCATGTGGCGACCCA 299
Query 300 AGAAGATACTATAGTTCAACAACTCAACAGTGGTGTTCGAGCATTGATGTTGGATACGTA 359
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AGAAGATACTATAGTGCAACAACTCAATAGTGGTGTTCGAGCATTGATGTTGGATACGTA 359
Query 360 CGATTACGAAGGAGACGTATGGTTTTGCCATTCCTTCGACGAACAATGCTTTGAGTTCAC 419
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 360 CGATTACGAAGGAGACGTATGGTTGTGCCATTCGTTCGACGAACAATGCTTTGAGTTCAC 419
Query 420 CAAATTTAATCGGGCGATAGACACATTCAAGGAGATATTCGCGTTCTTGACAGCGAATCC 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAAGTTTAATCGGGCGATAGACACATTCAAGGAGATATTCGCGTTCTTGACAGCGAATCC 479
Query 480 ATCAGAGATCGTGACATTGA-TCTTGGAGGATTACGTCAAATCGCAAAACGGGTTAACCA 538
|||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 480 ATCAGAGATCGTGACATT-ACTATTGGAGGATTACGTCAAATCGCAAAACGGGTTAACCA 538
Query 539 AAGTATTTACCGATTCCGGTTTGAAGAAATTTTGGTTTCCGGTTCAAAATATGCCTATAG 598
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 539 AAGTGTTTACCGATTCCGGTTTGAAGAAATTTTGGTTTCCGGTTCAAAATATGCCTTTAG 598
Query 599 GTGGCCAAGATTGGCCGTTGGTTAAGGATATGGTCGCCAATAACCACCGGTTAATCGTTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTGGCCAAGATTGGCCGTTGGTTAAGGATATGGTCGCCAATAACCACCGGTTAATCGTTT 658
Query 659 TCACTTCAGCTAAATCTAAGCAAGAAACCGAAGGAATAGCTTACCAGTGGAATTACATGG 718
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 659 TTACTTCAGCTAAATCGAAGCAAGAAACCGAAGGAATAGCTTACCAGTGGAATTACGTAG 718
Query 719 TGGAAAATCAATATGGAGACGATGGAGTTAAACCAGATGAATGTAGCAATAGAGCAGATT 778
||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGGAAAACCAATATGGGGACAATGGAGTTAAACCAGATGAATGTAGCAATAGAGCAGATT 778
Query 779 CTGCACTGTTAACCGATAAAACGAAAGCTTTGGTTTCGGTAAACCATTTCAAGACAGTTC 838
|||||||||||||||||| ||| ||| | ||||||| |||||||||||||||||||||||
Sbjct 779 CTGCACTGTTAACCGATACAACCAAATCATTGGTTTTGGTAAACCATTTCAAGACAGTTC 838
Query 839 CGGTTAAGATATTGACTTGTGAGGAGAACTCTGAGCAACTTCTCGATATGATTAAGACAT 898
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 839 CGGTTAAGATATTGACTTGTGAGGAAAACTCTGAACAACTTCTCGATATGATTAAGACAT 898
Query 899 GTTACGTAGCCGCAGGGAACCGATGGGCCAATTTTGTCGCCGTCAACTTTTACAAGAGGA 958
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 GTTACGTAGCCGCAGGGAACCGATGGGCCAATTTTGTCGCCGTCAATTTTTACAAGAGGA 958
Query 959 GTAATGGAGGAGGAACGTTTCAAGCAATTGATAAACTAAACGGAGAGCTTCTATGTGGAC 1018
|| ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||
Sbjct 959 GTGATGGAGGAGGAACATTTCAAGCGGTTGATAAACTAAATGGAGAGCTTCTATGTGGAC 1018
Query 1019 GTGATGATGTGCATGCTTGTTAA 1041
|||||||||||||||||||||||
Sbjct 1019 GTGATGATGTGCATGCTTGTTAA 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5