BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13690.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471529 jgi|Araly1|471529|fgenesh2_kg.1__1483__AT1G13690.1 1219 0.0
> Ahg471529 jgi|Araly1|471529|fgenesh2_kg.1__1483__AT1G13690.1
Length=796
Score = 1219 bits (660), Expect = 0.0
Identities = 754/799 (94%), Gaps = 7/799 (1%)
Strand=Plus/Plus
Query 61 GAGAAGGAATTCGAAGAAACAGATT-TCAACAATGGCGGCAGTTCAACAGCAACAAGCGA 119
||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 1 GAGAAGGAATTCGGAGAAAGAGATTATTAACAATGGCGGCAGTTCAACAGCAACAAGCGA 60
Query 120 TGCAGAAGAACACTTTATACGTAGGAGGTTTAGCTGATGAAGTTAACGAATCGATCCTTC 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TGCAGAAGAACACTTTATACGTAGGAGGTTTAGCTGATGAGGTTAACGAATCGATCCTTC 120
Query 180 ACGCCGCGTTTATACCTTTCGGCGATATCAAAGACGTGAAGACGCCGTTGGACCAAGCGA 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGCTGCGTTTATACCTTTCGGCGATATCAAAGACGTGAAGACGCCGTTGGACCAAGCGA 180
Query 240 ATCAGAAGCATAGATCCTTCGGATTCGTTACTTTTCTTGAGAGAGAAGACGCTTCTGCTG 299
||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 181 ATCAGAAACACAGATCCTTCGGATTCGTCACTTTTCTTGAGAGAGAAGACGCTTCTGCAG 240
Query 300 CTATGGATAATATGGACGGTGCTGAGCTTTATGGTCGTGTTCTCACTGTTAATTATGCTC 359
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCATGGATAATATGGATGGTGCTGAGCTTTATGGTCGTGTTCTCACTGTTAATTATGCTC 300
Query 360 TCCCTGAGAAAATTAAGGGTGGTGAACAGGGTTGGGCTGCTCATCCACTTTGGGCAGATG 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCCCTGAGAAAATCAAGGGTGGTGAACAGGGTTGGGCTGCTCATCCACTTTGGGCAGATG 360
Query 420 CAGACACATGGTTTGAGAGGCAGCAACAGGAGAAGGAGATTCTGAAGATGCAAGCTGAGA 479
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 361 CAGACACATGGTTTGAGAGGCAGCAACAGGAAAAGGAGATGCTGAAGATGCAAGCTGAGA 420
Query 480 ACAAGGCTGCCATGGAGACTGCTGAGGAGCTTCACAGGAAGAAATTGGCGGAAGATCGAC 539
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 421 ACAAGGCTGCCATGGAGACTGCTGAGGAACTTCACAGGAAGAAATTGGCGCAAGATCGAC 480
Query 540 AAGGAGAGATGGAGGAAGATACAGATACCAAAAATGATCCTATGGCCAGAGCAGAGGCTG 599
|||| ||| |||||||||||||||| |||| | ||||||||||||||||||| |||||||
Sbjct 481 AAGGCGAGTTGGAGGAAGATACAGAGACCATAGATGATCCTATGGCCAGAGCCGAGGCTG 540
Query 600 ATGCTCTAAGTCACGGCGATGCCTAATGAAAGTAAGCGTTACCGGATTCTCTTATGCACC 659
|||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||||||
Sbjct 541 ATGCTCTAAGTCACGGCGATGCCTAATGAACGTAAGCATTACCGGTTTCTCTCATGCAC- 599
Query 660 T-T-GTCCTGTAGGATAACAAGTATGTTTTCGCCTGAGTGTGTAACACTGTCACTATCAC 717
| | | | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 TGTAGGC-TGTAGGATAACAAGTACGTTTTCGCCTGAGTGTGTAACACTGTCACTATCAC 658
Query 718 CTCATAGAGTTTTTGAGGTTAGATTGTTTCTTGAGGTTGATTACCATGTTATTGCTATAG 777
|||||||||||||||||||||||||||||||||| |||| | | |||||||||| |||||
Sbjct 659 CTCATAGAGTTTTTGAGGTTAGATTGTTTCTTGAAGTTGCTGAACATGTTATTGTTATAG 718
Query 778 TTAATAGATTTGGTAGTTTGGTGAAACTTGCTTGCTTAGAAAAGTAAGAGTCATGTAT-C 836
||||||||||||||||||||||||||||||| || |||||||| ||| |||||||| | |
Sbjct 719 TTAATAGATTTGGTAGTTTGGTGAAACTTGCGTGGTTAGAAAATTAAAAGTCATGTTTTC 778
Query 837 TAAACCGGATGCTCTTCAT 855
||||||||||||||||||
Sbjct 779 -AAACCGGATGCTCTTCAT 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5