BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13700.1
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920254 jgi|Araly1|920254|scaffold_101535.1 1389 0.0
> Ahg920254 jgi|Araly1|920254|scaffold_101535.1
Length=848
Score = 1389 bits (752), Expect = 0.0
Identities = 816/848 (96%), Gaps = 0/848 (0%)
Strand=Plus/Plus
Query 88 TGAAACAACAGAGGAAGCAATATGGCACTTACTTGGACTCATAAAGACAGGGGAGAAATT 147
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TGAAACAACATAGGAAGCAATATGGCACTTACTTGGACTCATAAAGACAGAGGAGAAATT 60
Query 148 AGGGTTCATGAGAATTTGGAGGAACTAAGCATAGACTTGGTTGATTATATAGCTGAGATA 207
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CGGGTTCATGAAAATTTGGAGGAACTAAGCATAGACTTGGTAGATTATATAGCTGAGATA 120
Query 208 TCAGAAGCATCAATTAAAGAACATGGTGCTTTCTGCATTGTGTTATCAGGAGGCTCTCTC 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAGAAGCATCAATTAAAGAACATGGTGCTTTCTGCATTGTGTTATCAGGAGGCTCTCTC 180
Query 268 ATTAGCTTCATGGGAAAATTGATCGAGCCGCCTTACGACAAGATTGTAGATTGGGCGAAA 327
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 181 ATTAGCTTCATGGGAAAATTGATCGAGCCGCCTTACGACAAGATTGTCGATTGGGCAAAA 240
Query 328 TGGTATGTTTTCTGGGCGGATGAGCGTGTGGTAGCTAAGAATCATGACGATAGCAACTAC 387
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 241 TGGTATGTTTTCTGGGCGGATGAGCGTGTGGTAGCTAAGAGTCATGACGACAGCAACTAC 300
Query 388 AAGCTAGCCAAAGATAATTTACTCTCCAAGGTAAATGTGTTTCCGAGACATATATGTTCC 447
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGCTAGCCAAAGATAATTTACTGTCCAAGGTAAATGTGTTTCCGAGACATATATGTTCC 360
Query 448 ATTAACGACACAGTTTCAGCGGAGGAAGCTGCAACAGAGTATGAATTCGCCATCAGACAG 507
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTAACGACACAGTTTCGGTGGAGGAAGCTGCAACAGAGTATGAATTCGCCATCAGACAG 420
Query 508 ATGGTGAGATCACGAACCGTGGCTGCGTCAGACAACAGTGACAGTCCCAGGTTTGATCTG 567
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGGTGAGAACACGAACCGTGGCTGCGTCAGACAACAGTGACAGTCCCAGGTTTGATCTG 480
Query 568 ATCTTGCTTGGGATGGGCTCAGATGGACATGTAGCCTCACTCTTCCCGAACCACCCAGCA 627
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 481 ATCTTGCTTGGGATGGGCTCAGATGGGCATGTAGCCTCGCTCTTCCCGAACCATCCAGCA 540
Query 628 CTTGAGGTGAAGGACGATTGGGTCACATTCCTAACCGACTCTCATAAACCGCCACCAGAG 687
||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 541 CTTGAGGTGAAGGACGATTGGGTTACGTTCCTAACCGACTCTCCTAAACCGCCACCAGAG 600
Query 688 AGAATCACATTCACTTTGCCCGTCATCAACTCAGCTGCTAACGTTGTCGTAGTAGCAACC 747
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 601 AGAATCACATTCACTTTGCCCGTCATTAACTCAGCTGCTAACGTTGTTGTCGTAGCAACC 660
Query 748 GGCGAATCCAAAGCCAATGCTATCCACTTAGCAATCGATGATTTGCCCTTACCAGACAGC 807
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 661 GGCGAATCCAAAGCCAATGCTATGCACTTAGCAATCGATGATTTGCCCTTACCAGAAACC 720
Query 808 TCTCTGTCTCTGCCTGCAAGGCTAGTCCACCCGAGCAATGGGAATCTGATTTGGTTTATG 867
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 721 TCTCTGTCTCTGCCTGCAAGGCTGGTCCAGCCGAGCAATGGGAATCTGATTTGGTTTATG 780
Query 868 GATAAACAAGCGGGGTCTAAGCTTGACAGGTTTAAATTTTCCGAGTAGGATTTAGGTTTT 927
||||||| ||| |||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct 781 GATAAACCAGCAGGGTCTAAACTTGACAGGTTTAAATTTTCTGAGTAGGATTTAGATTTT 840
Query 928 CTTCTTTG 935
||||||||
Sbjct 841 CTTCTTTG 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37856056581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5