BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13710.1
Length=1826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471531 jgi|Araly1|471531|fgenesh2_kg.1__1485__AT1G13710.1 2804 0.0
Ahg311315 jgi|Araly1|311315|fgenesh1_pm.C_scaffold_1000095 75.0 2e-12
> Ahg471531 jgi|Araly1|471531|fgenesh2_kg.1__1485__AT1G13710.1
Length=1792
Score = 2804 bits (1518), Expect = 0.0
Identities = 1703/1794 (95%), Gaps = 6/1794 (0%)
Strand=Plus/Plus
Query 37 ctctctctcCTGCCATAACTCAGCCTGAGATGTCTCCGGAAGCTTACGTTCTGTTCTTTA 96
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCCTTCCATAACTCAGCCTGAGATGTCTCCGGAAGCTTACGTTCTGTTCTTTA 60
Query 97 ACAGTTTTAACCTCGTAACCTTCGAAGCCTTTGCTTCAGTCTCACTTATCATAGCCACAG 156
|||||||||||||||||||||||||||| |||||||| || || ||| ||||||||||||
Sbjct 61 ACAGTTTTAACCTCGTAACCTTCGAAGCATTTGCTTCGGTTTCTCTTTTCATAGCCACAG 120
Query 157 TTGCTTTCTTGCTCTCACCAGGTGGGCTCGCATGGGCCTGGACCGGGTCATCCAAGAGTC 216
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 TTGCTTTCTTTTTCTCACCAGGTGGGCTCGCATGGGCCTGGACCGGGTCATCCAAGAGCC 180
Query 217 GGGTTTCGATTCCAGGACCATCTGGTTCTCTTTCCGTCTTCTCCGGCTCCAATCCCCACC 276
||||||| || || |||||||||||||||||||||||| ||||||| || ||||||||||
Sbjct 181 GGGTTTCAATCCCGGGACCATCTGGTTCTCTTTCCGTCCTCTCCGGTTCTAATCCCCACC 240
Query 277 GTGTTCTCGCCGCTCTTGCTAAACGCTTCAAGGCCTCTCCGTTGATGGCGTTCTCAGTTG 336
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GTGTTCTCGCCGCTCTTGCAAAACGCTTCAAGGCCTCTCCGTTGATGGCGTTTTCAGTTG 300
Query 337 GGTTTTCGCGTTTCGTTATCTCTAGTGAACCGGAGACGGCTAAAGAGATTTTGAGCAGCT 396
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 GGTTTTCGCGTTTCGTTATCTCTAGTGAACCGGAGACGGCTAAAGAGATTTTGAACAGCT 360
Query 397 CTGCTTTTGCTGACCGGCCGGTTAAGGAGTCAGCTTACGAGCTTTTGTTTCACCGTGCCA 456
|||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 361 CTGCTTTTGCGGACCGGCCGGTTAAGGAGTCAGCTTACGAACTTCTGTTCCACCGTGCCA 420
Query 457 TGGGATTCGCACCGTATGGTGAGTATTGGAGGAATCTGAGGAGAATCTCCTCCACTCATC 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGGATTCGCACCGTATGGTGAGTATTGGAGGAATCTGAGGAGAATCTCCTCCACTCATC 480
Query 517 TTTTCAGTCCAAGAAGAATCGCGAGTTTTGAGGGTGTTAGAGTTGGCATCGGTATGAAGA 576
|||| ||||| ||||||||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 481 TTTTTAGTCCGAGAAGAATCGCAAGTTTCGAAAGTGTTAGAGTTGGGATCGGTATGAAGA 540
Query 577 TGGTCAAGAAGATTAAAAGCCTTGTTACGTCTGATGCTTGTGGTGAAGTTGAAGTGAAAA 636
|||| ||||||||||| || |||||| |||||||||| |||||||||||||||||||||
Sbjct 541 TGGTGAAGAAGATTAAGAGTGTTGTTATGTCTGATGCTGGTGGTGAAGTTGAAGTGAAAA 600
Query 637 AGATCGTTCACTTTGGTTCTTTGAATAATGTAATGACGACAGTGTTTGGTGAAAGCTACG 696
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 601 AGATCGTTCACTTTGGTTCTTTGAATAATGTAATGACGACTGTGTTCGGTGAAAGTTACG 660
Query 697 ATTTTGATGAAGTTAATGGAAAAGGGTGTTTTTTGGAGAGGCTGGTGAGTGAAGGCTACG 756
|||||||||||||||| ||| || |||||| |||||||||| ||||||||||| || |
Sbjct 661 ATTTTGATGAAGTTAAAGGATCTGGATGTTTTCTGGAGAGGCTTGTGAGTGAAGGTTATG 720
Query 757 AGTTGCTTGGGATTTTTAACTGGAGTGATCACTTTTGGTTTCTTCGTTGGTTTGACTTCC 816
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 AGTTGCTTGGGATATTTAACTGGAGTGATCACTTTTGGGTTCTTCGTTGGTTTGACTTCC 780
Query 817 AAGGAGTGAGGAAGAGGTGTAGAGCTTTGGTCTCTGAAGTCAACACTTTTGTCGGCGGAA 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGGAGTGAGGAAGAGGTGTAGAGCTTTGGTCTCTGAAGTCAACACTTTTGTCGGCGGAA 840
Query 877 TAATTGAGAAACACAAGATGAAGAAGGGTAATAATCTCAATGGAGAGGAAAATGACTTCG 936
||||||| |||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 841 TAATTGAAAAACACAAGATGAAGAAGAGCAATAATCTCAAGGGAGAGGAAAATGACTTCG 900
Query 937 TTGATGTCTTGCTTGGCTTGCAAAAGGATGAAAAGTTGTCTGATTCTGACATGATTGCTG 996
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 TTGATGTCTTGCTTGGCTTGCAAAAGGATGAAAAGCTGTCTGATTCTGACATGATTGCTG 960
Query 997 TTCTTTGGGAAATGATATTTAGAGGGACAGATACAGTTGCGATTCTAGTGGAATGGGTGC 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTCTTTGGGAAATGATATTTAGAGGGACAGATACAGTTGCGATTCTAGTGGAATGGGTGC 1020
Query 1057 TTGCAAGAATGGTTTTGCATCAAGACATCCAAGATAAACTCTACAGAGAGATAGCTTCTG 1116
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1021 TTGCAAGAATGGTTTTGCATCAAGACATCCAAGATAAACTCTACAAAGAGATAGCTTCTG 1080
Query 1117 CTACAAGTAACAATATTAGATCCTTGTCTGATTCCGACATCCCAAAACTGCCGTACCTTC 1176
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1081 CTACAAGTAACAATACTAGATCCTTGTCTGATTCCGACATCCCAGAACTGCCGTACCTTC 1140
Query 1177 AAGCTATTGTCAAAGAAACCCTAAGGCTCCACCCCCCTGGTCCACTTCTCTCTTGGGCTC 1236
|||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| |
Sbjct 1141 AAGCTATTGTCAAAGAAACCCTAAGGCTCCACCCACCTGGACCACTCCTCTCCTGGGCCC 1200
Query 1237 GTCTCGCTATCCATGACGTCCACGTAGGTCCTAACCTTGTCCCTGCTGGAACCATAGCTA 1296
||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||
Sbjct 1201 GTCTCGCTATCCACGATGTCCACGTAGGTCCTAACCTTGTCCCCGCGGGAACCATAGCTA 1260
Query 1297 TGGTCAACATGTGGTCCATCACACACAACGCTAAAATCTGGACCGACCCTGAAGCGTTTA 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGGTCAACATGTGGTCCATCACACACAACGCTAAAATCTGGACCGACCCTGAAGCGTTTA 1320
Query 1357 TGCCTGAAAGGTTCATT---AGTGAGGATGTGAGCATCATGGGCTCGGATCTTAGATTGG 1413
|||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1321 AGCCTGAGAGGTTCATTGGTAGTGAGGATATGAGCATCATGGGCTCGGATCTTAGATTGG 1380
Query 1414 CTCCATTCGGATCCGGTCGTCGGGTTTGTCCCGGTAAAGCAATGGGTCTAGCTACTGTTC 1473
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1381 CTCCATTCGGATCGGGTCGTCGAGTTTGCCCCGGTAAAGCAATGGGTCTAGCTACTGTTC 1440
Query 1474 ATCTCTGGATTGGTCAACTAATTCAGAATTTTGAATGGGTGAAGGGTTCTTGTGATGTTG 1533
|||| ||||||| |||| | ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1441 ATCTATGGATTGCTCAATTGATTCAGAATTTCGAATGGGTTAAGGGTTCTTGTGATGTTG 1500
Query 1534 AGCTCGCTGAGGTTCTGAAGCTGTCTATGGAGATGAAGAATCCGTTGAAGTGCAAGGCTG 1593
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AGCTCGCTGAGGTTCTCAAGCTGTCTATGGAGATGAAGAATCCGTTGAAGTGCAAGGCTG 1560
Query 1594 TTCCAAGGAATGTTGGTTTCGCTTGATGGATTATCGTGTCGGGGACTTGTTTAATGAAGT 1653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1561 TTCCAAGGAATGTTGGTTTCGCTTGATGGATTATCGTGTCGGGGACTTGTTTAATGAACT 1620
Query 1654 ATGGCTAGTACTTATTAATAAAATTAATAATAATTATGG-CTGGGAAGGAAGTTAGGGTT 1712
|||| ||||||| |||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 1621 ATGGGTAGTACTAATTAATAAAATTAATAATAATTATGGTC-GGGAAGGA-GTTAGGGTT 1678
Query 1713 TTGGCACGTTGGTCGAACTTCTTTAGGGTTTTGGTGTAAGTTTTCTATTTTGCTTTGTGA 1772
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1679 TTGGCACGTTGGTCGAACTTCTTTAGGGTTTTGGTGTGAGTTTTCTATTTTGCTTTGTGT 1738
Query 1773 TGCTTCATGATGTTATCGCATCCCCTCGGTTTGCTTTTCAATGTTTTTCTATCT 1826
||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1739 TGCTTCATGATGTTATCGCATCCCCTCGGTTTGCTTTTCAATGATTTTCTATCT 1792
> Ahg311315 jgi|Araly1|311315|fgenesh1_pm.C_scaffold_1000095
Length=1620
Score = 75.0 bits (40), Expect = 2e-12
Identities = 91/115 (79%), Gaps = 6/115 (5%)
Strand=Plus/Plus
Query 966 GAAAAGTTGTCTGATTCTGACATGA-TTGCTGTTCTTTGGGAAATGATATTTAGAGGGA- 1023
||||| || || ||||| ||||| | |||||||||||||||||||||||||||| ||||
Sbjct 955 GAAAAATTATCAGATTCAGACAT-AGTTGCTGTTCTTTGGGAAATGATATTTAG-GGGAA 1012
Query 1024 CAGATACAGTTGCGATTCT-AGTGGAATGGGTGCTTGCAAGAATGGTTTTGCATC 1077
| || || |||||| || | | | || ||||| || || || || || ||||||
Sbjct 1013 CGGACACTGTTGCGGTTTTGA-TCGAGTGGGTCCTAGCGAGGATTGTGATGCATC 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68562441000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5