BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13730.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471532 jgi|Araly1|471532|fgenesh2_kg.1__1486__AT1G13730.1 2209 0.0
> Ahg471532 jgi|Araly1|471532|fgenesh2_kg.1__1486__AT1G13730.1
Length=1730
Score = 2209 bits (1196), Expect = 0.0
Identities = 1560/1725 (90%), Gaps = 67/1725 (4%)
Strand=Plus/Plus
Query 89 CAACAATCCCAATTTCTCCTCGTCGGAGATTTCTAAGTAAAACCCTAGAACTAACCATTA 148
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 31 CAAAAATCCCAATTTCTTCTCGTCGGAGATTTCTAAGTAAAACCCTAGAACTAACCA-T- 88
Query 149 TATATATTATAATACAAATATATTCATCCCTCCCTCTCCCTGTGTCTTACTCTGTCTTCT 208
|||||| || ||| ||||||||| |||||| |||||| || |||| ||||||||
Sbjct 89 TATATA-TA-AAT----ATATATTCA----TCCCTC-CCCTGTCTCCTACTTTGTCTTCT 137
Query 209 CTTCGAACTGATCTGAGATTTTTGATTCTGCTTCTCTTCTCATCTTCTCCCAAGGTAGAG 268
||||||||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct 138 CTTCGAACTCATCTGAGATTCTTGATTCTGCTTCTCTTCTTATCTTCTCCCTAGGTAGAG 197
Query 269 ATGGCACTTGAATCAAATGCTCCAGTGGTGGACCCAAACACTATTGGCAATTCTTTTGTT 328
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 198 ATGGCACTTGAATCAAATGCTCCTGTGGTGGATCCAAACACTATTGGCAATTCGTTTGTT 257
Query 329 GAGAAATACTACAACCTCTTGTATAAGTCACCATC-GCAAGTGCATCAGTTTTATCTCGA 387
||| | ||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 258 GAGCAGTACTACAACCTCTTGTATAAGTCACCAGCTG-TAGTGCATCAGTTTTATCTCGA 316
Query 388 CGATAGTGTTTTAGGCCGTCCTGGTTCTGATGGAGAGATGGTTTCTGTCAAATCCTTGAA 447
|||||||||||| ||||| || ||| ||||||||||||||||||| ||||||||||| ||
Sbjct 317 CGATAGTGTTTTGGGCCGCCCCGGTGCTGATGGAGAGATGGTTTCCGTCAAATCCTTAAA 376
Query 448 AGCTATCAATGAGCAGATTATGTCCTTCGATTACGAAATCTCAAAGATTCAGATTTTGAC 507
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 377 AGCTATCAATGAGCAGATTATGTCCTTTGATTACAAAATCTCAAAGATTCAGATTTTGAC 436
Query 508 TGCTGATTCCCAAGCATCTTACATGAATGGAGTTGTGACTCTAGTCACAGGTTTACTAAC 567
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||
Sbjct 437 TGCTGATTCCCAAGCATCTTACAAGAATGGAGTTGTGACTCTAGTCACGGGTTTACTGAC 496
Query 568 CGTGAAAG-AGGGGCAAAGAATGAGATTTTCTCAATCGTTTTTCCTTGTGCCGC-TGAAT 625
|||||||| ||||| | ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 497 CGTGAAAGAAGGGG-AGAGAATGAGATTTTCTCAATCGTTTTTCCTTGTGCCGCAT-AAT 554
Query 626 GGAAGCTATTTCGTTCTCAACGATGTCTTTAGGTATGTTGCTGATGAGATTGTTGAACCA 685
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 GGAAGCTACTTCGTGCTGAACGATGTCTTTAGGTATGTTGCTGATGAGATTGTTGAACCA 614
Query 686 GAAGCTAACAAGAAAGAAGTCGAGGAGGTTATTCCTCAAGTGGTCCAACCAACAG----- 740
||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||
Sbjct 615 GAAGCTAACAAGAAAGAGGTCGAGGAGGTGATTCCTCAAATGGTCCAATCAACAGTCACT 674
Query 741 A-----GC--AG--GTAG-ATGAAGTTGCAGAGCCGGTTACTATCCCTACCCAACAACCC 790
| || || | | |||||||||||||||| ||||||||||||| |||||||||
Sbjct 675 ATTTTGGCAGAGCCGGCGAATGAAGTTGCAGAGCCAGTTACTATCCCTAGTCAACAACCC 734
Query 791 GAGGCGAAACAGACAACCGAAAATACAGTGAAGAAACCAGAAAGAGCTGTAGCAAATGGA 850
| ||| |||||||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 735 GCGGCAAAACAGACTACTGAAAATATAGTGAAGAAACCAGAAAGAGCTGTAGCAAATGGA 794
Query 851 CATCCCAAAACACAGGAGGATAATGTTGTGAACGATAAAAGCAATGGTGTTGATGCTCCC 910
|| |||||||| |||||||| || |||||||||||||||||||||| ||| |||||||||
Sbjct 795 CACCCCAAAACCCAGGAGGAAAAAGTTGTGAACGATAAAAGCAATGCTGTGGATGCTCCC 854
Query 911 AAGAAATCATTTGCA-CATATTGTCCAAGATTTGGCTCAAAACGGTGCTACATTCAATGC 969
|||||||||| |||| | ||||| ||| |||||||||||||||||||||||||||||
Sbjct 855 AAGAAATCATATGCAGGA-ATTGTTCAATCTTTGGCTCAAAACGGTGCTACATTCAATGT 913
Query 970 CAAAGCTTCTCCTGCAAAGCCTAAGTCTAAGCCTGTTACAAAGCCGAGTGCTGCTCGTGA 1029
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 914 CAAAGCTCCTCCTGCAAAGCCTAAGTCTAAGCCTGTTACAAAGCCGAGTGCTGCTCCTGA 973
Query 1030 ATCCAAAGCTCCTGCTCCTGTTTCTGAACACTCTTCTGCTGCAACAATCGACCAACAAGC 1089
||||||||||||| | || |||||||||||||||||||||| |||| ||||||||| |
Sbjct 974 ATCCAAAGCTCCTTCGCCGGTTTCTGAACACTCTTCTGCTGAAACAGTCGACCAAC---C 1030
Query 1090 TGAGGGTTATACGATATTTGTTGCCAACTTGCTCATGGACGCTACACCAGAGCAACTAAA 1149
||| || ||||||||||||||||||||||| ||||||||| |||||||||||||| ||
Sbjct 1031 --AGG-TTGTACGATATTTGTTGCCAACTTGCCCATGGACGCGACACCAGAGCAACTCAA 1087
Query 1150 TGAAACATTCAAAGGTTTTGGAGCTATTACGAAAGATGGTATCCAAGTGAGAAGTTACAG 1209
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1088 TGAAACCTTCAAAGGTTTTGGATCTATTACGAAAGATGGTATCCAAGTGAGAAGTTACAG 1147
Query 1210 GCTCAAGGGAAACTGTTTTGGCTTTGTGACATTCGCATCTGCTGAAGCTGTGAAATTGGT 1269
||| |||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||
Sbjct 1148 GCTGAAGGGAAACTGTTTCGGGTTTGTGACATTCGAATCGGCTGAAGCTGTGAAATTGGT 1207
Query 1270 CCTCCAGGCTCACAAAGAATCAGCCATCAGAATCGGAAACCG-AAGAGTTTCAATAGAAG 1328
||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||
Sbjct 1208 CCTCCAGGCTCACAAAGGCTTAGCCATCAGAATCGGAAACCGCAA-AGTTTCAATAGAAG 1266
Query 1329 AGAAACGAGGCAACAACGATAATGGAAGACCCGCAATGCGAAACGGAGGTTATAGGAACG 1388
|||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 1267 AGAAACGAGGCAACAACGATAATGGAAGACCCTCAACGCGAAATGGAGGTTATAGGAACG 1326
Query 1389 ACAACGGTTACAGAAACGATGGG-TATAGGCCTCGAGGCAACGGTTCCAATGGAGGTCGA 1447
| ||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||||
Sbjct 1327 AGAACGGTTACAGAAACGATGGGGT-TAGGCCTAGAGGCAACGGTTTCAATGGAGGTCGA 1385
Query 1448 GGCTATGGAAGAAATGGATCTGAGAGACGGGGTGAATCACGCAATGGTGAGGCTCACAAT 1507
||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 1386 GGCCATGGAAGAAATGGATCCGAGAGACGGGGTGAATCACGCAACGGTGAGGCTTACAAT 1445
Query 1508 GGTGATGGCAAAGTTCATCAGAACGGTACGGTAGAAGCTAGCCGTTAAAATACTCAATCC 1567
||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 1446 GGTGATGGCAAAGTTCATCAGAACGGTACGGTAAAAGCTGGCCGTGAAAATGCTCAATCC 1505
Query 1568 AGAGGCTAAACAAGTTTGAAGTCATTTG-TTAAACTCTGTTGTGTTATTGTTGTTCATTT 1626
||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||
Sbjct 1506 AGAGGCTAAACAAGTTTGAAGTCATTTTCTTAAACTCTGATGTGTTCTTATTGTTCATTT 1565
Query 1627 GAAATTGAG-----G---TTTTATAGGAAGAGATAGTgagaggga--gagagagaga--- 1673
|||| |||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 1566 GAAAATGAGAATCTGAAGTTTTATAGGAAGAGATAGTGAGAGGGACAGAGAGAGAGAGAG 1625
Query 1674 -TTAGAAGTTCTTTTGGAGTAGGTTTATCTCTT-AGGTGATAATCCCTTCTTT-----GA 1726
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1626 ATTAGAAGTTCTTTTGGAGTAGGTTTATCTCTTTAGGTGATAATCCCTTCTTTCATTTGA 1685
Query 1727 GATTTTGTTTGGGATAACAAAAATTTGATGATTACTTTTACCTTC 1771
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1686 GATTTTGTTTGGGATAACAAAAATTTGATGATTACTTTTACTTTC 1730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5