BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13740.1 Length=1591 Score E Sequences producing significant alignments: (Bits) Value Ahg471533 jgi|Araly1|471533|fgenesh2_kg.1__1487__AT1G13740.1 1179 0.0 Ahg943270 jgi|Araly1|943270|scaffold_603814.1 104 2e-21 > Ahg471533 jgi|Araly1|471533|fgenesh2_kg.1__1487__AT1G13740.1 Length=1496 Score = 1179 bits (638), Expect = 0.0 Identities = 789/856 (92%), Gaps = 33/856 (4%) Strand=Plus/Plus Query 1 TTCTCTCTCTTTTCCTCTAATGT-CCAAAAGGG---TCTTCTTC-T-TT-GTCTCTGCTC 53 |||||||||||||||||| |||| || |||||| |||||||| | || || ||||||| Sbjct 1 TTCTCTCTCTTTTCCTCTGATGTCCCCAAAGGGTCTTCTTCTTCTTCTTCGTATCTGCTC 60 Query 54 TTCACTTTCAATTATAACCTCTTCGTCTTCTTCGCCGTCTCTGGTATTAACTCCGGCGAG 113 ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 61 TTCACCTTCAATTGTAACCTCTTCGTCTTCTTCGCCGTCTCTGGTAATAACTCCGGCGAG 120 Query 114 ----ttttttttttttttttACTTTGATATGAATTTGCGAGATTTACTGTTTAATTCATG 169 |||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||| Sbjct 121 TCTTTTTTTTTTTTTTTTTTACTTTGATGTGAATTTGCAAAATTCACTGTTTAATTCATG 180 Query 170 ATGACAATTTTGGATTTTTGATCGGATGTGAAATTCAGAGTTTTTCATTCTTCTTCATCA 229 || ||||||||||||||||||||||||||||||||||||| | || | Sbjct 181 ATAACAATTTTGGATTTTTGATCGGATGTGAAATTCAGAG-----------T-TT--T-- 224 Query 230 TCTTATAACAAAGAAGAAACAAAACAAAAAACtttttttttCTTTCTTTCTATTGTTTCG 289 || ||||||||| ||||||||||| ||||| | |||||||||||| ||||||||||||| Sbjct 225 TC--ATAACAAAGGAGAAACAAAAC-AAAAA-TCTTTTTTTCTTTC-TTCTATTGTTTCG 279 Query 290 GAATCTATGGGTGAAGCAAGCAGACAACAAAGGGCATGGAACAGAGAAATGACGGTTACG 349 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 280 GAATCTATGGGTGAAGCAAGCAGACAACTAAGGGCATGGAACAGAGAAATGACGGTTACG 339 Query 350 ACAAATCTTTCTCTAGACATAGATAAATACCCGAGAGATCTGTTACGAGGTTTCATGTCT 409 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 340 ACAAATCTTTCTTTAGACATAGACAAATACCCGAGAGATCTGTTACGAGGTTTCATGTCT 399 Query 410 GAAAACGGCGGTGGAAGAGTCTTTCACGGCGGAGAAACAAACTGCGATGATGAGAGTACG 469 ||||||||||||||||||| |||||||||||||||| || |||||||||||||||| | Sbjct 400 GAAAACGGCGGTGGAAGAGCCTTTCACGGCGGAGAATCAGGCTGCGATGATGAGAGTGCC 459 Query 470 ATTGAGCTCAATCTTGGTTTGTCTTTAGGTGGTAGATTCGGAGTAGACAAGACTCCGAGG 529 |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 460 ATTGAGCTGAATCTTGGTTTGTCTTTAGGAGGTCGATTCGGAGTAGACAAGACTCCGAGG 519 Query 530 AAGCTGAAACGATCTTCTTCTGTTTTGGACACTGTACCATTCAACGATTCAACTGTGGCT 589 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 520 AAGCTGAAACGATCTTCTTCTGTTTTGGACACTGTACCATTTAACGATTCAACGGTGGCT 579 Query 590 GAGCCTGAGAATTACACGGTGGGTTTAGAGAGAACGACGTCGTTACCGGCGGAGATGGAA 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 580 GAGCCTGAGAATTACACGGTGGGTTTAGAGAGAACGACGTCGTTACCGGCGGAGATGGAA 639 Query 650 GAGGAATGGAGGAAAAGGAAAGAGATGCAATCGCTTAGGAGAATGGAAGCTAAGAGAAGG 709 ||||||||||||||||||||||||||||| || || || ||||||||||||||||||||| Sbjct 640 GAGGAATGGAGGAAAAGGAAAGAGATGCAGTCACTGAG-AGAATGGAAGCTAAGAGAAGG 698 Query 710 AGATGTGAGAAACAGAGTTTCAGAGTTGGGAATTCTGATGACCAAACGGTGTCGTTTGAG 769 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 699 AGATGTGAGAAACAGAGTTTCAGAGTTGGGAATTCTGATGACCAAACGGTGTCCTTTGAG 758 Query 770 AATGAGAGATGGGTTACTGCGAGTAAAAGTGGCTTCTTGCAGAGACATTTGGTTTCTTCT 829 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 759 AATGAGAGATGGGTTACTGCGAGTAAGAGTGGTTTCTTGCAGAGACATTTGGTTTCTTCT 818 Query 830 AATAGACAAGTCTGTG 845 ||||||||||| |||| Sbjct 819 AATAGACAAGTGTGTG 834 Score = 841 bits (455), Expect = 0.0 Identities = 593/654 (91%), Gaps = 31/654 (5%) Strand=Plus/Plus Query 938 AGCTGCAATGATGAAAGAAGCCCGAAAATCGTGGCAGGATGTTCATCGAACAGCGGAAGC 997 |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 874 AGCTGCAATGATGAAAGAAGCCCGAAGATCGTGACAGGATGTTCATCGAACAGCGGAAGC 933 Query 998 CAGGGAACAGAGAGACCGAGTGTGACTAGAGCCAACAAAGTGAATGAGAATGAGAATGAA 1057 ||||||||||||| ||||||||||||| ||||||||||||||||||||||| | | | Sbjct 934 CAGGGAACAGAGAAACCGAGTGTGACTGGAGCCAACAAAGTGAATGAGAAT--G-A-G-- 987 Query 1058 AAAAGAGTGAGAAGTGAAGACTCGGTGGATAGGAAAGGAAAAGGGATGGCTACGTCTACT 1117 ||| ||||||| || || |||||||||| ||||||||||||||||||||||||||||||| Sbjct 988 AAAGGAGTGAGGAGAGAGGACTCGGTGGTTAGGAAAGGAAAAGGGATGGCTACGTCTACT 1047 Query 1118 GGTTTGGTTGATATGCCTTGTGTGTTTACTAAAGGGGACGGGCCAAACGGAAGACGGGTT 1177 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1048 GGTTTGGTTGACATGCCTTGTGTGTTTACGAAAGGGGACGGGCCAAACGGAAGACGGGTT 1107 Query 1178 GATGGGATTCTGTACAAGTATGGAAAAGGAGAGGAAGTGAGGATAATGTGCATTTGCCAT 1237 || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1108 GACGGGATTTTGTACAAGTATGGAAAAGGAGAGGAAGTGAGGATAATGTGCATTTGCCAC 1167 Query 1238 GGTAGTTTCTTGACACCAGCTGAGTTTGTTAAACATGGTGGTGGTGGAGATGTGGATCGT 1297 ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct 1168 GGTAGTTTCTTGACACCAGCTGAGTTTGTTAAACATGGTGGCGGAGGAGAAGTGGATCGT 1227 Query 1298 CCTCTTCGGCATATCGTTGTCAACACCTCTTCTTCGACCTTTTAAATCGAAGAATCGGTG 1357 ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1228 CCTCTACGGCATATCGTTGTCAACACTTCTTCTTCGACCTTTTAAATAGAAGAATCGGTA 1287 Query 1358 AAGAAACCGGAAGGGTCTTGTGTTCTCTGTTTCAttttttttcttgttgttttatctttt 1417 ||||||||||| || |||| |||||| |||||||||||| |||||||||||||||||| Sbjct 1288 AAGAAACCGGA-GG-TCTTTTGTTCTTTGTTTCATTTTT---CTTGTTGTTTTATCTTTT 1342 Query 1418 ggatctctctggtttttgGCTATAAAAATGAATGCCAAAACCTCAAATCTTGATGAAGAT 1477 |||||||| | ||||||||||||| ||||||||||||| | |||| ||||||||||||| Sbjct 1343 GGATCTCTA-G-TTTTTGGCTATAAGAATGAATGCCAAATC-TCAA-TCTTGATGAAGAT 1398 Query 1478 CAAGATTCTCATGTTGTCTTAGGTCTAATACTTGTGAACATGAAAGTATCATCATCGAAT 1537 |||||||||||||| | | | | | |||||||||||||||||||| ||| Sbjct 1399 TAAGATTCTCATGTT-T-T--G-T---------G--AACATGAAAGTATCATCATCAAAT 1442 Query 1538 GATTCTTTCTCGAGCTCTCGCGTTTAATATAAGTCCTCTCTGCAAAGTGCGTAT 1591 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 1443 GATTCTTTCTCAAGCTCTCGCGTTTAATATAAGGCCTCTCTGCAAAGTGCGTAT 1496 > Ahg943270 jgi|Araly1|943270|scaffold_603814.1 Length=297 Score = 104 bits (56), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 8/90 (9%) Strand=Plus/Minus Query 753 AAACGGTGTCGTTTGAGAATGAGAGATGGGTTA--------CTGCGAGTAAAAGTGGCTT 804 ||||||||||||||||||||||||||||||||| |||||||||| ||||| || Sbjct 98 AAACGGTGTCGTTTGAGAATGAGAGATGGGTTACTGGCTTCCTGCGAGTAAGAGTGGTTT 39 Query 805 CTTGCAGAGACATTTGGTTTCTTCTAATAG 834 |||||||||||||||||||||||||||||| Sbjct 38 CTTGCAGAGACATTTGGTTTCTTCTAATAG 9 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59611233425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5