BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13740.1
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471533 jgi|Araly1|471533|fgenesh2_kg.1__1487__AT1G13740.1 1179 0.0
Ahg943270 jgi|Araly1|943270|scaffold_603814.1 104 2e-21
> Ahg471533 jgi|Araly1|471533|fgenesh2_kg.1__1487__AT1G13740.1
Length=1496
Score = 1179 bits (638), Expect = 0.0
Identities = 789/856 (92%), Gaps = 33/856 (4%)
Strand=Plus/Plus
Query 1 TTCTCTCTCTTTTCCTCTAATGT-CCAAAAGGG---TCTTCTTC-T-TT-GTCTCTGCTC 53
|||||||||||||||||| |||| || |||||| |||||||| | || || |||||||
Sbjct 1 TTCTCTCTCTTTTCCTCTGATGTCCCCAAAGGGTCTTCTTCTTCTTCTTCGTATCTGCTC 60
Query 54 TTCACTTTCAATTATAACCTCTTCGTCTTCTTCGCCGTCTCTGGTATTAACTCCGGCGAG 113
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TTCACCTTCAATTGTAACCTCTTCGTCTTCTTCGCCGTCTCTGGTAATAACTCCGGCGAG 120
Query 114 ----ttttttttttttttttACTTTGATATGAATTTGCGAGATTTACTGTTTAATTCATG 169
|||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||
Sbjct 121 TCTTTTTTTTTTTTTTTTTTACTTTGATGTGAATTTGCAAAATTCACTGTTTAATTCATG 180
Query 170 ATGACAATTTTGGATTTTTGATCGGATGTGAAATTCAGAGTTTTTCATTCTTCTTCATCA 229
|| ||||||||||||||||||||||||||||||||||||| | || |
Sbjct 181 ATAACAATTTTGGATTTTTGATCGGATGTGAAATTCAGAG-----------T-TT--T-- 224
Query 230 TCTTATAACAAAGAAGAAACAAAACAAAAAACtttttttttCTTTCTTTCTATTGTTTCG 289
|| ||||||||| ||||||||||| ||||| | |||||||||||| |||||||||||||
Sbjct 225 TC--ATAACAAAGGAGAAACAAAAC-AAAAA-TCTTTTTTTCTTTC-TTCTATTGTTTCG 279
Query 290 GAATCTATGGGTGAAGCAAGCAGACAACAAAGGGCATGGAACAGAGAAATGACGGTTACG 349
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 280 GAATCTATGGGTGAAGCAAGCAGACAACTAAGGGCATGGAACAGAGAAATGACGGTTACG 339
Query 350 ACAAATCTTTCTCTAGACATAGATAAATACCCGAGAGATCTGTTACGAGGTTTCATGTCT 409
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 340 ACAAATCTTTCTTTAGACATAGACAAATACCCGAGAGATCTGTTACGAGGTTTCATGTCT 399
Query 410 GAAAACGGCGGTGGAAGAGTCTTTCACGGCGGAGAAACAAACTGCGATGATGAGAGTACG 469
||||||||||||||||||| |||||||||||||||| || |||||||||||||||| |
Sbjct 400 GAAAACGGCGGTGGAAGAGCCTTTCACGGCGGAGAATCAGGCTGCGATGATGAGAGTGCC 459
Query 470 ATTGAGCTCAATCTTGGTTTGTCTTTAGGTGGTAGATTCGGAGTAGACAAGACTCCGAGG 529
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 460 ATTGAGCTGAATCTTGGTTTGTCTTTAGGAGGTCGATTCGGAGTAGACAAGACTCCGAGG 519
Query 530 AAGCTGAAACGATCTTCTTCTGTTTTGGACACTGTACCATTCAACGATTCAACTGTGGCT 589
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 520 AAGCTGAAACGATCTTCTTCTGTTTTGGACACTGTACCATTTAACGATTCAACGGTGGCT 579
Query 590 GAGCCTGAGAATTACACGGTGGGTTTAGAGAGAACGACGTCGTTACCGGCGGAGATGGAA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 GAGCCTGAGAATTACACGGTGGGTTTAGAGAGAACGACGTCGTTACCGGCGGAGATGGAA 639
Query 650 GAGGAATGGAGGAAAAGGAAAGAGATGCAATCGCTTAGGAGAATGGAAGCTAAGAGAAGG 709
||||||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 640 GAGGAATGGAGGAAAAGGAAAGAGATGCAGTCACTGAG-AGAATGGAAGCTAAGAGAAGG 698
Query 710 AGATGTGAGAAACAGAGTTTCAGAGTTGGGAATTCTGATGACCAAACGGTGTCGTTTGAG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 699 AGATGTGAGAAACAGAGTTTCAGAGTTGGGAATTCTGATGACCAAACGGTGTCCTTTGAG 758
Query 770 AATGAGAGATGGGTTACTGCGAGTAAAAGTGGCTTCTTGCAGAGACATTTGGTTTCTTCT 829
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 759 AATGAGAGATGGGTTACTGCGAGTAAGAGTGGTTTCTTGCAGAGACATTTGGTTTCTTCT 818
Query 830 AATAGACAAGTCTGTG 845
||||||||||| ||||
Sbjct 819 AATAGACAAGTGTGTG 834
Score = 841 bits (455), Expect = 0.0
Identities = 593/654 (91%), Gaps = 31/654 (5%)
Strand=Plus/Plus
Query 938 AGCTGCAATGATGAAAGAAGCCCGAAAATCGTGGCAGGATGTTCATCGAACAGCGGAAGC 997
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 874 AGCTGCAATGATGAAAGAAGCCCGAAGATCGTGACAGGATGTTCATCGAACAGCGGAAGC 933
Query 998 CAGGGAACAGAGAGACCGAGTGTGACTAGAGCCAACAAAGTGAATGAGAATGAGAATGAA 1057
||||||||||||| ||||||||||||| ||||||||||||||||||||||| | | |
Sbjct 934 CAGGGAACAGAGAAACCGAGTGTGACTGGAGCCAACAAAGTGAATGAGAAT--G-A-G-- 987
Query 1058 AAAAGAGTGAGAAGTGAAGACTCGGTGGATAGGAAAGGAAAAGGGATGGCTACGTCTACT 1117
||| ||||||| || || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 988 AAAGGAGTGAGGAGAGAGGACTCGGTGGTTAGGAAAGGAAAAGGGATGGCTACGTCTACT 1047
Query 1118 GGTTTGGTTGATATGCCTTGTGTGTTTACTAAAGGGGACGGGCCAAACGGAAGACGGGTT 1177
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1048 GGTTTGGTTGACATGCCTTGTGTGTTTACGAAAGGGGACGGGCCAAACGGAAGACGGGTT 1107
Query 1178 GATGGGATTCTGTACAAGTATGGAAAAGGAGAGGAAGTGAGGATAATGTGCATTTGCCAT 1237
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 GACGGGATTTTGTACAAGTATGGAAAAGGAGAGGAAGTGAGGATAATGTGCATTTGCCAC 1167
Query 1238 GGTAGTTTCTTGACACCAGCTGAGTTTGTTAAACATGGTGGTGGTGGAGATGTGGATCGT 1297
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1168 GGTAGTTTCTTGACACCAGCTGAGTTTGTTAAACATGGTGGCGGAGGAGAAGTGGATCGT 1227
Query 1298 CCTCTTCGGCATATCGTTGTCAACACCTCTTCTTCGACCTTTTAAATCGAAGAATCGGTG 1357
||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1228 CCTCTACGGCATATCGTTGTCAACACTTCTTCTTCGACCTTTTAAATAGAAGAATCGGTA 1287
Query 1358 AAGAAACCGGAAGGGTCTTGTGTTCTCTGTTTCAttttttttcttgttgttttatctttt 1417
||||||||||| || |||| |||||| |||||||||||| ||||||||||||||||||
Sbjct 1288 AAGAAACCGGA-GG-TCTTTTGTTCTTTGTTTCATTTTT---CTTGTTGTTTTATCTTTT 1342
Query 1418 ggatctctctggtttttgGCTATAAAAATGAATGCCAAAACCTCAAATCTTGATGAAGAT 1477
|||||||| | ||||||||||||| ||||||||||||| | |||| |||||||||||||
Sbjct 1343 GGATCTCTA-G-TTTTTGGCTATAAGAATGAATGCCAAATC-TCAA-TCTTGATGAAGAT 1398
Query 1478 CAAGATTCTCATGTTGTCTTAGGTCTAATACTTGTGAACATGAAAGTATCATCATCGAAT 1537
|||||||||||||| | | | | | |||||||||||||||||||| |||
Sbjct 1399 TAAGATTCTCATGTT-T-T--G-T---------G--AACATGAAAGTATCATCATCAAAT 1442
Query 1538 GATTCTTTCTCGAGCTCTCGCGTTTAATATAAGTCCTCTCTGCAAAGTGCGTAT 1591
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1443 GATTCTTTCTCAAGCTCTCGCGTTTAATATAAGGCCTCTCTGCAAAGTGCGTAT 1496
> Ahg943270 jgi|Araly1|943270|scaffold_603814.1
Length=297
Score = 104 bits (56), Expect = 2e-21
Identities = 80/90 (89%), Gaps = 8/90 (9%)
Strand=Plus/Minus
Query 753 AAACGGTGTCGTTTGAGAATGAGAGATGGGTTA--------CTGCGAGTAAAAGTGGCTT 804
||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 98 AAACGGTGTCGTTTGAGAATGAGAGATGGGTTACTGGCTTCCTGCGAGTAAGAGTGGTTT 39
Query 805 CTTGCAGAGACATTTGGTTTCTTCTAATAG 834
||||||||||||||||||||||||||||||
Sbjct 38 CTTGCAGAGACATTTGGTTTCTTCTAATAG 9
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59611233425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5