BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13755.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911168 jgi|Araly1|911168|Al_scaffold_0001_1422 433 8e-121
Ahg911166 jgi|Araly1|911166|Al_scaffold_0001_1420 303 6e-82
> Ahg911168 jgi|Araly1|911168|Al_scaffold_0001_1422
Length=366
Score = 433 bits (234), Expect = 8e-121
Identities = 325/368 (88%), Gaps = 10/368 (3%)
Strand=Plus/Plus
Query 117 ATGAAGATCGCTTCCTT-AAAATTGTTGTTATTGGTTTCTCTACTTTTTGCCGTAACCCA 175
||||||||||||||||| |||| |||| |||||||||||||||||||| ||||| |||
Sbjct 1 ATGAAGATCGCTTCCTTCAAAA-TGTTATTATTGGTTTCTCTACTTTTCGCCGTCGTCCA 59
Query 176 AAATGGAATTAGCATTCAAAACAGTGAAACTTCTG-TCAACCAAAACTCATGTATGCCGA 234
||||||| ||||||||||||| | ||||| || || ||||||||||||| |||| || |
Sbjct 60 AAATGGACTTAGCATTCAAAATAATGAAAGTT-TGCTCAACCAAAACTCGTGTAAGCTTA 118
Query 235 ATGAACCAAGATGCACCGGTTGTCCAGGTGGTGGTAGTGGT-G-G-TTATCGTGGACCAC 291
| ||||||||||||| ||||||| |||||||||||||||| | | || || ||||||||
Sbjct 119 ACGAACCAAGATGCAGCGGTTGTGAAGGTGGTGGTAGTGGTGGTGATTTTCCTGGACCAC 178
Query 292 CACCTCCATGTTGTAAGAATGATAGTGATTGTAAAGCGCATTGCCCAGAGGGAGGTTATT 351
||||||||||||||||||| ||||||||||||| | | |||||||| ||||| |||||||
Sbjct 179 CACCTCCATGTTGTAAGAAAGATAGTGATTGTACACCACATTGCCCGGAGGGTGGTTATT 238
Query 352 GCAGC-A--ACCAATGCGACTGTGTTTGTAATTTGGTTAAAGTGATGAATAATGATGTTC 408
| ||| | |||||||||| ||||||||| || |||||||||||||||||||||||||||
Sbjct 239 GTAGCAAGCACCAATGCGATTGTGTTTGTCATGTGGTTAAAGTGATGAATAATGATGTTC 298
Query 409 GTTGCCAAGTAGATACTGATTGCAACATGAAATGTTCAAAGCAAGGCTATTGCAAATTGG 468
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 299 GTTGCCAAGTAGATACTGATTGTAACATGAAATGTTCAAATCAAGGGTATTGCAAATTGG 358
Query 469 CATCTTAA 476
|||| |||
Sbjct 359 CATCCTAA 366
> Ahg911166 jgi|Araly1|911166|Al_scaffold_0001_1420
Length=276
Score = 303 bits (164), Expect = 6e-82
Identities = 215/239 (90%), Gaps = 6/239 (3%)
Strand=Plus/Plus
Query 117 ATGAAGATCGCTT-CCTTAAAATTGTTGTTATTGGTTTCTCTACTTTTTGCCGTAACCCA 175
|||||||||| || | |||||| ||||||||||||||||||||||| | ||||| |||
Sbjct 1 ATGAAGATCGTTTGCTTTAAAA-TGTTGTTATTGGTTTCTCTACTTGTCGCCGTCGTCCA 59
Query 176 AAATGGA-ATTAGCATTCAAAACAGTGAAACTTCTGTCAACCAAAACTCATGTATGCCGA 234
||||||| | || ||||||||| ||||||| |||||||||||||||||| |||||||| |
Sbjct 60 AAATGGACA-TACCATTCAAAATAGTGAAAGTTCTGTCAACCAAAACTCTTGTATGCCAA 118
Query 235 ATGAACCAAGATGCACCGGTTGTCCAGGTGGTGGTAGTGGTGG-TTATCGTGGACCACCA 293
||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 119 ATGAACCAAGATGCAGCGGCTGTCCAGGTGGTGGTAGTGGTGGCTT-TCGTGGACCACCA 177
Query 294 CCTCCATGTTGTAAGAATGATAGTGATTGTAAAGCGCATTGCCCAGAGGGAGGTTATTG 352
||||||||||||||||| |||||||||||||||| |||||| ||||||| |||||||||
Sbjct 178 CCTCCATGTTGTAAGAAGGATAGTGATTGTAAAGAGCATTGTCCAGAGGTAGGTTATTG 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20604018060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5