BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13780.1
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471537 jgi|Araly1|471537|fgenesh2_kg.1__1491__AT1G13780.1 1932 0.0
Ahg489554 jgi|Araly1|489554|fgenesh2_kg.6__2688__AT5G27750.1 1096 0.0
> Ahg471537 jgi|Araly1|471537|fgenesh2_kg.1__1491__AT1G13780.1
Length=1413
Score = 1932 bits (1046), Expect = 0.0
Identities = 1296/1416 (92%), Gaps = 19/1416 (1%)
Strand=Plus/Plus
Query 89 ATGCCTGGGTTTGATAGAATTAGCGAATTGCCGGAATCTTTGATTAGTCAAATACTGTTA 148
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 4 ATGCCTGGGTTCGATAGAATTAGCGAATTGCCGGAATCTTTGATTAGTCATATACTCTTA 63
Query 149 CACCTTCCGACTAAAGCTTCTGTGAAGACGAGTGTTTTATCGACTAGATGGAAGAATCTA 208
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 64 CACCTTCCGACTAAAGATTCGGTGAAGACGAGTGTTTTATCGACTAGATGGAAGAATCTA 123
Query 209 TGGCTTAATGTTCCCGGACTTGATTTGAACTGCCGTGATTTCCCCTTTCAGAACAACAAC 268
||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||
Sbjct 124 TGGCTTAATGTTCCCGGACTTGACTTGAACTGCCGTGATTTCCCTTTTGATAACAACAAC 183
Query 269 GAAAAACTGTTGATTGATTTCATTGACAGATTTCTCCAGTTTAACAATGAGTCACGTCTT 328
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 184 GAAAAAGTGTTGATTGATTTCATCGACAGATTTCTCCAGTTTAACAATGAGTCTCGCCTG 243
Query 329 CAAAAATTCAAGGTAGATTACAGTAGAGATAAGATCATTAAGTTCTCGGATCGGATTGGT 388
| ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||
Sbjct 244 CTAAAATTCAAGGTAAATTACAGTAGAGATGAGATCATCAAGTTCTCGGATCGGATCCGT 303
Query 389 GACGCGATTAGCCGCGGGATTCGAGTTTTAGATGTTGAGAGCAATACCTATTATCGAGAT 448
|| ||| ||| |||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 304 GATGCGGTTAACCGCCGAATTCGAGTTTTAGATGTTGAGAGCAATACCTATTATCAAGAT 363
Query 449 GCTGATGATTGCATTGACTATCCTTGTATCGAGTTCATGCCTCTGAATCTTTATTCGTGT 508
|||||||| || ||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 364 GCTGATGACGGCCTTGTCTATCCTTGTATCGAGTTCATGCCTCTGAATCTTTATACGAGT 423
Query 509 AAGACATTGGTTTCTTTGAAGCTTTCGTATTCGGGTCTTGAGGATCCAGGG-TTTGTCTA 567
|||||||||||||||||||||||||||| ||||||||||| |||||| ||| ||||| ||
Sbjct 424 AAGACATTGGTTTCTTTGAAGCTTTCGTTTTCGGGTCTTGCGGATCC-GGGATTTGTTTA 482
Query 568 TTTGCCTTGTCTCAAATTCATGCATCTTCGAGAAGTTCGATGGGATAGTAGTGGTACTAT 627
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 483 CATGCCTTGTCTCAAATTCATGCATCTTCGAGAAGTTCGTTGGCATAGTAGTGGTACTAT 542
Query 628 GAATCTGGAGAAGCTTGTTTCAGGTTGTCCTGTTCTTGAAGAACTGATTTATCTTCATGA 687
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 543 GAATCTGGACAAGCTTGTCTCAGGATGTCCTGTTCTTGAAGAACTGATTTATCTTTGTGA 602
Query 688 TGATAAATTGGTGGTTACGCGTGTGAGATCTCGAAGCTTGAAGAGGTTTTCTATTCCGTT 747
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TGATGAATTGGTGGTTACTCGTGTGAGATCTCGAAGCTTGAAGAGGTTTTCTATTCCGTC 662
Query 748 T-AGGCATAA-ACTTTCTTTGTTTA-GGAGAGTGACACAGACATTTGAGATTGATGCTCC 804
| || || | | |||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 663 TGAG-CACAGTA-TTTCTT-GTTTTCGGAGAGTGGCACAGACATTTGAGATTGATGCTCC 719
Query 805 TGGACTAGAGTATATGAGTCTTAAAGCAGACCATTTCGATAGAATCGTGGTAAAGAACCT 864
||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 720 AGGACTAGAGTATATGAGTCTTAAAGAAGACCATTTCGATAGATTCGTGGTGAAGAACCT 779
Query 865 TACTTCTTTATTCATGATTGACCTTGATATCAAATTCATTGTCGGGTTTGGCTGGATGTT 924
||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 780 GACTTCTTTATTCATGATTGACCTCGATATCAAATTCATTTTCGGGTTTGGCCGGATGTT 839
Query 925 TGATCCGGAGGACTTACCAAAGAGAAATGAAATCCGTGATTTTCTCACCGGGATATCTAG 984
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 TGATCCGGAGGACTTGGCAAATAGAAATGAAATCCGTGATTTTCTCACCGGGATATCTAT 899
Query 985 TGTAAGACATATGGTCATCTCTCAT-AATACAGTGAAGGCCCTTGATCTTTACTCAAAAG 1043
||||||||||||| ||||||||||| || ||||||||||||||| || |||||||| |||
Sbjct 900 TGTAAGACATATGATCATCTCTCATCAA-ACAGTGAAGGCCCTTCATATTTACTCAGAAG 958
Query 1044 TAGGACTGATTCCCAAATTCAATAACTTATCCCGTGTAGAGGCTGCGTTCCCGAGCTCCT 1103
|||||| ||||||||||||||||||| |||||||| | |||||| ||||||||||||||
Sbjct 959 TAGGACCGATTCCCAAATTCAATAACGTATCCCGTCTTCAGGCTGAGTTCCCGAGCTCCT 1018
Query 1104 TGTTACAGTTTTTGCCAGCCTTTCTTGAGAGCTTCCCGAATCTGAAACACTTAATCTTGG 1163
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1019 TGTTACAGTTTTTGCCAGCCTTTCTTGAGAGTTTCCCGAATCTGAAACACTTAATCTTGA 1078
Query 1164 AAACTGAATGTCCAGTGGAGGTGATGGAGAAGTTTGAACTCGTAAATGTGCCTCGGTGTT 1223
||| || | ||||| ||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 1079 AAATTGTTTATCCAGAGGAGGTGATGGAGGAGTTAAAACTCGTAAATGTGCCTCGATGTT 1138
Query 1224 TCGTATCGACTCTTGAACATGTTGAGATAAAAGGATTGTTTGACTGGGGGGAACAGGATA 1283
|||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1139 TCGTATCGACTCTTGAGCGTGTTGAGATAAAAGGATTGTTTGACTGGGGGGAAGAGGATA 1198
Query 1284 TGAAAATAGCGAGTTACTTTCTCGAAAACTCAGCAGTCCTCAAGAAACTGATTCTGAGTT 1343
|||||||||||||||||||||| |||||||||||||||||| ||||||||||| || |||
Sbjct 1199 TGAAAATAGCGAGTTACTTTCTTGAAAACTCAGCAGTCCTCGAGAAACTGATTGTGTGTT 1258
Query 1344 TCATGGGTTGTCCTCAACATTATTCGGAATCAGATATCTACGAGGAACTTAATAAACTCA 1403
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1259 TCATGGGTTGTCCTCAACATTATTCGGAATCAGATATCTACGAGGAGCTTGATAAACTCA 1318
Query 1404 CAAAACGTTCTCCGAGATGTCAAATTATCATT-A-GATGC-T-G-AATGAGGCCATGAG- 1457
|||||||||||| ||||||||||||||||| | | || | | |||||||||| ||
Sbjct 1319 CAAAACGTTCTCTAAGATGTCAAATTATCATCGACGCTGAATTGGAATGAGGCCACGATC 1378
Query 1458 -T-ATCATGTGTAGAAAGTCTGTTTTCTCATGAAAC 1491
| |||| ||||||||||| ||||||||||||||||
Sbjct 1379 ATTATCA-GTGTAGAAAGTATGTTTTCTCATGAAAC 1413
> Ahg489554 jgi|Araly1|489554|fgenesh2_kg.6__2688__AT5G27750.1
Length=1548
Score = 1096 bits (593), Expect = 0.0
Identities = 1152/1410 (82%), Gaps = 86/1410 (6%)
Strand=Plus/Plus
Query 89 ATGCCTGGGTTTGATAGAATTAGCGAATTGCCGGAATCTTTGATTAGTCAAATACTGTTA 148
|||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||
Sbjct 81 ATGCCTGGGTTTGATAGAATCAGCGAATTACCGGAATCTTTGATTACTCAAATACTCTTA 140
Query 149 CACCTTCCGACTAAAGCTTCTGTGAAGACGAGTGTTTTATCGACTAGATGGAAGAATCTA 208
|||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 141 TGCCTTCCGACTAAAGATTCGGTGAAGACGAGTGTTTTATCTACTAGATGGAAGAATCTA 200
Query 209 TGGCTTAATGTTCCCGGACTTGATTTGAACTGCCGTGATTTCCCCT-TTC-AGAACAA-C 265
||||| ||||||||||||||||| ||||||||||||||||| ||| || ||| ||
Sbjct 201 TGGCTAAATGTTCCCGGACTTGACTTGAACTGCCGTGATTT-ACCTGATCAAGATGAAGA 259
Query 266 A-ACGAAAAACTGTTGATTGATTTCATTGACAGATTTCTCCAGTTTAA-CAATGAGTCAC 323
| | ||| || |||| ||| | ||||| ||||| ||| | ||||||| | ||||||||
Sbjct 260 ATATGAAGAAGTGTTTATTAACTTCATCGACAGGTTTTTAGAGTTTAATC-CTGAGTCAC 318
Query 324 GTCTTCAAAAATTCAAGGTAGATTACAGTA-GAGATAAGATCA-TTAAGTTCTCGGATCG 381
| || ||||||||||||||||||||||||| | | | |||| | || |||| ||||||
Sbjct 319 GCCTGCAAAAATTCAAGGTAGATTACAGTAGGCG-TGAGAT-ACTTGGGTTCAAGGATCG 376
Query 382 GATTGGTGAC-GCGATTAGCCGCGGGATTCGAGTT-TTAGATGTTGAGAGCAATACCT-A 438
||| ||| || | ||||| |||||| |||||| || || |||| || ||| | || || |
Sbjct 377 GATCGGT-ACAGTGATTAACCGCGGAATTCGACTTCTT-GATGCTGTGAGTAGTA-CTGA 433
Query 439 TTATCGAGATGCTGATGATTGCATTGA-CTATCCTTGTATCGAGTTCATGCCTCTGAATC 497
|||||||| | ||||| || || | ||||||| | |||||||||||||||||||||
Sbjct 434 ATATCGAGA-G--GATGACGGC-TTTATGTATCCTTATTTCGAGTTCATGCCTCTGAATC 489
Query 498 T-TTATTCGTGTAAGACATTGGTTTCTTTGAAGCTTTCGTATTCGGGTCTTGA-GGATCC 555
| || | || | ||||||||||||||||| ||||| |||| |||||||||| | ||||||
Sbjct 490 TGTT-TACGAGCAAGACATTGGTTTCTTTAAAGCTCTCGTGTTCGGGTCTT-AGGGATCC 547
Query 556 AGGG-TTTGTCTATTTGCCTTGTCTCAAATTCATGCATCTTCGA-GAAGTTCGATGGGAT 613
||| ||||| | | |||||||||| ||| ||||| ||||| | ||| |||||| |
Sbjct 548 -GGGTTTTGTTTCTATGCCTTGTCTTAAAGTCATGTTTCTTC-AGGAAATTCGAT--G-- 601
Query 614 AGTAGTGGTACTATGAATCTGGAGAAGCTTGTTTCAGGTTGTCCTGTTCTTGAAGAACTG 673
|| |||||||||| |||| || |||||||| || || |||||||||||||||||||||
Sbjct 602 -GT-CTGGTACTATGCATCTTGAAAAGCTTGTCTCTGGATGTCCTGTTCTTGAAGAACTG 659
Query 674 A---T--T----TATCTTCATGATGAT-AAAT--TGG-TG-G-TTACGCGTGTGAGATCT 718
| | | |||||| |||| ||| || | ||| || | |||| ||||||||||||
Sbjct 660 ACCTTGGTAAGGTATCTTGATGAGGATGAATTGGTGGTTGCGCTTACTCGTGTGAGATCT 719
Query 719 CGAAGCT-TGAAGAGGTTTTCTATTCCGTTTAGGCATA---AACTTTCTT-T-GTTTAGG 772
| || | |||||| ||||| | ||||| | | |||| || ||| || | | | | |
Sbjct 720 TGGAG-TCTGAAGACGTTTTATGTTCCGCTCA--CATATGGAAGTTT-TTGTAGATCAAG 775
Query 773 AG-AGT-GACACAGACATTTGAGATTGATGCTCCTGGACTAGAGTATATGAGTCTTAAAG 830
|| | ||||||| | |||||||||||||||| |||||||||| ||||| ||| ||||
Sbjct 776 AGTCCTAGACACAG-TACTTGAGATTGATGCTCCAGGACTAGAGTCTATGACTCTCAAAG 834
Query 831 CAGACCATTTCGATAGAATCGTGGTAAAGAACCTTACTTCTTTATTCATGATTGACCTTG 890
|||||||||||| | |||| | ||||||||||| |||||||| ||||||||||||||||
Sbjct 835 AAGACCATTTCGAGAAAATCATAGTAAAGAACCTGACTTCTTTGTTCATGATTGACCTTG 894
Query 891 ATATCAAATTCATTGTCGGGTTTGGCTGGATG-TTTGATCCGGAGGACTTACCAAAGAGA 949
||||||| || ||||| || || | | | | |||||||| ||||||||| | |||| |
Sbjct 895 ATATCAAGTTTGTTGTCAAGTATGACAGTA-GTTTTGATCCAGAGGACTTATCGAAGACA 953
Query 950 AATGAAATCCGTGATTTTCTCACCGGGATATCTAGTGTAAGACATATGGTCATCTCTCAT 1009
|||||||||| |||||||||||| ||||||||| ||| |||||||||| |||||||| |
Sbjct 954 AATGAAATCCTTGATTTTCTCACTGGGATATCTCGTGCAAGACATATGATCATCTCTAAG 1013
Query 1010 AATACAGTGAAGGCCCTTGATCTTTACTCAAAAGTAGGACT-GATTCCCAAATTCAATAA 1068
|| |||||||||||||||||| |||||||||||||||| | ||||||||||||||||||
Sbjct 1014 AAAACAGTGAAGGCCCTTGATAGTTACTCAAAAGTAGGA-TCGATTCCCAAATTCAATAA 1072
Query 1069 CTTATCCCGTGTAGAGGCTGCGTTCCCGAGCTCCTTGTTACAGTTTTTGCCAGCCTTTCT 1128
|||||||||| || |||||| |||||||||| ||||||||| ||||||||||||||||||
Sbjct 1073 CTTATCCCGTTTACAGGCTGTGTTCCCGAGCCCCTTGTTACCGTTTTTGCCAGCCTTTCT 1132
Query 1129 TGAGAGCTTCCCGAATCTGAAACA-CTTAATCTTGGAA-ACTGAATGTCCAGTGGA-G-- 1183
|||||| ||||||||||||||| | | ||||| || || | || | | || ||| |
Sbjct 1133 TGAGAGTTTCCCGAATCTGAAA-ATCCTAATCCTG-AAGATTGCTTTTGCAAAGGATGAC 1190
Query 1184 GTGATGGAGAAGTTTGAA-CTCGTAAATGTGCCTCGGTGTTTCGTATCGACTCTTGAACA 1242
| || |||| || | ||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 1191 GAGACGGAGGAGCT-GAATCTCGTAAATGTGCCTCGGTGTTTCATATCGACTCTCGAATG 1249
Query 1243 TGTTGAGATAAAAGGATTGTTTGACTGGGGGGAACAGGATATGAAAATAGCGA-GTTACT 1301
|||||||||||||||||||||||| |||| |||| |||| ||||||||||||| || |||
Sbjct 1250 TGTTGAGATAAAAGGATTGTTTGAATGGGAGGAAGAGGAGATGAAAATAGCGAAGT-ACT 1308
Query 1302 TTCTCGAAAACTCAGCAGTCCTCAAGAAACTGATTCTGAGTTTCATGGGTTGTCCTCAAC 1361
|||| |||||||||||||||||||||||||| | |||| ||||||| | | |||| |
Sbjct 1309 TTCTTGAAAACTCAGCAGTCCTCAAGAAACTCACTCTGTGTTTCATAGACTACCCTCGAT 1368
Query 1362 ATT-ATTCGGAAT-CAGATATCTACGAGGAACTTAATAAACTCACAAAACGTTCTCCGA- 1418
|| || | ||| ||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 1369 ATGCAT-CA-AATTCAGATGTCTACGAGGAGCTTAATAAACTCACAAAACGTTCTC-GAA 1425
Query 1419 GATGTCAAATTATCATTAGATGCTGAATGA 1448
|||||| ||||||| || |||| ||| |||
Sbjct 1426 GATGTCGAATTATCGTT-GATGATGACTGA 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61058662735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5