BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13790.1
Length=2407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471538 jgi|Araly1|471538|fgenesh2_kg.1__1492__AT1G13790.1 3515 0.0
> Ahg471538 jgi|Araly1|471538|fgenesh2_kg.1__1492__AT1G13790.1
Length=2287
Score = 3515 bits (1903), Expect = 0.0
Identities = 2178/2307 (94%), Gaps = 34/2307 (1%)
Strand=Plus/Plus
Query 1 ATGTATTCCAGAAGAGAGCTGGAAGATTTGGAGTACAGATACTACAGTGAAATGAAAGAT 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGTATTCCAGAAGAGAGCTGGAAGATTTGGAGTACCGATACTACAGTGAAATGAAAGAT 60
Query 61 GGTACAAGGAAAGTCAAAATCTCAGAGTCTCTGTTCAGGTGTCCCTTTTGTTACATAGAT 120
||||| ||||| |||||| |||||||||||||||||||||||||||| || |||| ||||
Sbjct 61 GGTACTAGGAAGGTCAAATTCTCAGAGTCTCTGTTCAGGTGTCCCTTCTGCTACAGAGAT 120
Query 121 CGAAAGCGTGATTACCAGTTTGATGACTTGCT-TCGACATGCTTCTGGTATTGGCGGTAG 179
|||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 121 CGAAAGCGTGATTACCAGTTTGATGACTTG-TATCGTCATGCTTCTGGTATTGGCGGTAG 179
Query 180 TTCCCGCACTAAGGATGGGAGAGATAA-AGCTAGACATCTTGCTCTGGAGAGATATATGA 238
||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 180 CTCCCGCACTAAGGATGGGAGAGA-AAGAGCTAGACATCTTGCACTGGAGAGATATATGA 238
Query 239 GGAAGTATCTCCGCCCTCGAGAAAGACCACG-TCCTTCTCCAACTTCAGATGTCTCTTCT 297
||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||
Sbjct 239 GGAAGTATCTCCGCCCTCGAGAAAGACCA-GATCCTACTCCAACTTCAGATGTCTCTTCT 297
Query 298 CTTCCTAAAGAGGAGTTTACTGGAAAGTGGAAATCTACTTTGTCAACTACTGAAGAAGGA 357
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 298 CTTCCTAAAGAGGAGTTTACCAGAAAGTGGAAATCCACTTTGTCAACTACTGAAGAAGGA 357
Query 358 GAATTCATAA-CTACTGAAAATTCTAGTTCACCTCATATTGTCAAAGCTGAACCAAAGTT 416
|||||||||| | | |||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 358 GAATTCATAAGC-ATTGAAAAATCTACTTCACTTCATATTGTCAAAGCTGAACCAAAGTC 416
Query 417 TGTCTCCGGAGATGATTCTGGACGTAGTGGTGAGGAAAGACTAAAGTTTTCTGATAAACC 476
|||||| ||||||||| ||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 417 TGTCTCAGGAGATGATCCTGGACGAAGTGGTGAGAAAAGACCAAAGTTTTCTGATAAACC 476
Query 477 CGACCCCTTTTTTAGCAACGAAGACAAATCATACCCTGCCAAAAGACCTTGCCTAGTTTC 536
| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 477 CAACCCCTCTTTTAGCAACGAAGACAAATCATACCCTGTCAAAAGACCTTGCCTAGTTTC 536
Query 537 TGGTGCGAAAGAGGGAGATGAACCTGTTCAACGGATTGGTCTCAGCCATGGTGCTAGCTT 596
|||||| |||||| |||| |||||||| |||| |||||||||||||||||||||||| ||
Sbjct 537 TGGTGCTAAAGAGAGAGAAGAACCTGTCCAACAGATTGGTCTCAGCCATGGTGCTAGATT 596
Query 597 TGCTCCAACATATCCCCAGAAGCTAGTTTCTTTGGGTGCTGGTAATGGGGATCAGATGTA 656
|||| | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGCT-C--C---T---CAGAAGCTAGTTTCTTTGGGTGCTGGTAATGGGGATCAGATGTT 647
Query 657 TGTGCATCCCTGGAAAGGTATCCTGGCGAATATGAAAAGAACGTTTA-ATGAAAAAACAA 715
|||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||
Sbjct 648 TGTGCATCCCTGGAAAGGTATCCTGGCGAACATGAAAAGAAC-TTTAGATGAGGAAACAG 706
Query 716 GGAAGTATGCTGGTGAGAGTGGAAGCAAGATAAGAGAAGATTTGATCAAGAAAGGGTTTA 775
|||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 707 GGAAGTATGCTGGTGAGAGTGGAAGCAAGATAAGAGAAGAACTGGTCAACAAAGGGTTTA 766
Query 776 ATCCCCATAAAGTCACGCCACTGTGGAACGGAAGACTTGGGTTTACTGGTTTTGCTATTG 835
||||||| |||||||||||| ||||||| |||| | |||| |||||||||||||||||||
Sbjct 767 ATCCCCACAAAGTCACGCCATTGTGGAATGGAAAATTTGGTTTTACTGGTTTTGCTATTG 826
Query 836 TTGACTTTGGTAAAGAGTGGGAAGGATTCAGAAACGCGACCATGTTTGATAAACACTTTG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TTGACTTTGGTAAAGAGTGGGAAGGATTCAGAAACGCGACCATGTTTGATAAACACTTTG 886
Query 896 AAGTGAGTCAGTGTGGGAAAAGAGACCATGATCTCACACGTGATCCAGGTGATAAGCTTT 955
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 887 AAGTGAATCAGTGTGGGAAAAGAGACCATGATTTCACACGTGATCCAGGTGATAAACTTT 946
Query 956 ATGGTTGGGTAGCAAAACAAGATGACTACTATTCAAGAACTGCTATTGGTGACCACCTCA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 947 ATGGTTGGGTAGCAAAACAAGATGACTACTATTCAAGAACTGCTATTGGTGACTACCTCA 1006
Query 1016 -GAAAGCAAGGGGACTTGAAGAGTGTTTCTGGTAAAGAGGCAGAAGATCAAAGAAAGACA 1074
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GGAAA-CAAGGGGACTTGAAGAGTGTTTCTGGTAAAGAGGCAGAAGATCAAAGAAAGACA 1065
Query 1075 TTCACGCTTGTCTCCAACTTGGAAAACACACTGGTA-ACCAAATCTGA-TAATCTTCAAC 1132
|||||||||||||| ||||||||||||||||||| | || ||| | | |||||||||||
Sbjct 1066 TTCACGCTTGTCTCAAACTTGGAAAACACACTGGAAGACAAAAAC--ACTAATCTTCAAC 1123
Query 1133 AAATGGAGAGCATCTACAAACAAACCAGTTCAGTGCTTGAGAAAAGAATGAAAGAGAAGG 1192
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1124 AAATGGAGAGCATCTACAAAAAAACCAGTTCAGTGCTTGAGAAAAGAATGAGAGAGAAGG 1183
Query 1193 ATGAAATGATCAACACACATAATGAAAAAATGAGTATTATGCAGCAAACTGCACGTGATT 1252
||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1184 ATGAAATGATCGACACACATAATGAAAAAATGAGTAGTATGCAGCAAACTGCGCGTGATT 1243
Query 1253 ATTTGGCCAGTATTTATGAAGAACATGAAAAGGCCTCTCAGCATCTGGAAGCTCAAAGGA 1312
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 ATTTGGCAAGTATTTATGAAGAACATGAAAAGGCCTCTCAGCATCTGGAAGCTCAAAGGA 1303
Query 1313 AAGAATATGAAGACCGGGAGAATTATCTAGATAAGTGTCAAGCTAAGAATAAGACTGAGC 1372
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1304 AAGAATATGAAGACCGGGAGAAATATCTGGATAAGTGTCAAGCTAAGAATAAGACTGAGC 1363
Query 1373 GGAGAAAGCTTCAATGGCAAAAGCATAAGAACTTAATGGCAACGCAAGAGCAAAACAAAG 1432
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1364 GGAGAAAGCTTCAATGGCAAAAGCAGAAGAACTTAATGGCAACTCAAGAACAAAACAAAG 1423
Query 1433 CTGATGAAGACATGATGAGATTGGCAGAACAGCAACAGAGGGAAAAAGATGAATTACGTA 1492
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1424 CTGATGAAGACATGATGAGATTGGCAGAACAGCAACAGAGGGAGAAAGATGAATTACGTA 1483
Query 1493 AGCAAGTTCGTGAGCTCGAGGAGAAGA-TCGATGCTGAGCAGGCATTAGAGCTAGAGATA 1551
||||||| |||||||| ||| |||| | ||||||||||||||||||| ||||||||||||
Sbjct 1484 AGCAAGTCCGTGAGCTTGAGCAGAA-ACTCGATGCTGAGCAGGCATTGGAGCTAGAGATA 1542
Query 1552 GAGCGTATGAGAGGTGACTTGCAGGTCATGGGACACATGCAAGAAGGTGAAGGTGAAGAT 1611
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 GAGCGTATGAGGGGTGACTTGCAGGTCATGGGACACATGCAAGAAGGTGAAGGTGAAGAT 1602
Query 1612 TCAAAAATCAAGGAGATGATAGAAAAGACAAAGGAAGAACTGAAGGAGAAAGAAGAGGAT 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 TCAAAAATCAAGGAGATGATAGAAAAGACAAAGGAAGAACTGAAGGAGAAAGAAGAGGAT 1662
Query 1672 TGGGAATAT-CAAGAGTCGCTCTATCAAACTCTTGTTGTAAAACATGGCTACACTAACGA 1730
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 TGGGAAT-TCCAAGAGTCGCTCTATCAAACTCTTGTTGTAAAACATGGCTACACTAACGA 1721
Query 1731 TGAGCTACAGGATGCGCGCAAGGCTTTGATTCGTTCAATGCGAGAGTTGACCACACGAGC 1790
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct 1722 TGAGCTACAGGATGCGCGCAAGGCTTTGATTCATTCAATGCGGGAGTTGACCTCACGAGC 1781
Query 1791 TTACATTGGTGTGAAGAGAATGGGAGCATTGGATGAGACACCATTCAAAAAAGTAGCTAA 1850
|||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||
Sbjct 1782 TTACATTGGTGTGAAGAGAATGGGAGCATTGGATGAGAAACCGTTCCAAAAATTAGCTAA 1841
Query 1851 AGAGAAATATCCAGCAGTAGAAGCTGATAAAAAAGCCGAAGAGCTCTGTTCCTTGTGGGA 1910
||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1842 AGAGAAATATCCAGCCGAAGAAGCTGATGAAAAAGCCGCAGAGCTCTGTTCCTTGTGGGA 1901
Query 1911 AGAGCACCTGGGAGACTCGGCTTGGCATCCGATTAAGGTCGTCGAAAAAGATGGAATCGC 1970
||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| | |
Sbjct 1902 AGAGCACTTGGGAGACTCGGCTTGGCATCCGATTAAGGTTGTCGTAAAAGATGGAACCCC 1961
Query 1971 AAAGGAAGAACTGAATGAAGAAGATGAGAAGCTACAAGAGCTGAGGAAAGAGTTGGGTGA 2030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 AAAGGAAGAACTGAATGAAGAAGATGAGAAGCTACAAGAGCTGAGGAAAGAGTTGGGTGA 2021
Query 2031 GGAAGTGTATGCAGCTGTGACACAAGCGCTTAAAGAAAGGAACGAGTATAATGGCAGTGG 2090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2022 GGAAGTGTATGCAGCTGTGACACAAGCGCTTAAAGAAAGGAACGAGTATAATGGCAGTGG 2081
Query 2091 AAGGTACATAGTGCCTGAGCTTTGGAATTTCAAACAAAACAGAAAAGCGAGC-ATCAAGG 2149
|||||||||||||||||||||||||||||||| | ||||||||||||||| | |||||||
Sbjct 2082 AAGGTACATAGTGCCTGAGCTTTGGAATTTCAGAGAAAACAGAAAAGCGA-CTATCAAGG 2140
Query 2150 AAGGAGTTGTTTATCTGGTCAACTCGTGGAAACAGAAGAAACCAAAGCCGAAGCGTAGAT 2209
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2141 AAGGAGTTGTTTATCTGCTCAACTCGTGGAAACAGAAGAAACCAAAGCCGAAGCGTAGAT 2200
Query 2210 AAA-AA-TTA-ATTCTAGAAACCTCTATTGTTGATAATTATTAAGACTAGATGAGATTTC 2266
||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2201 AAATAAATTTTATTCTAGAAACCTCTATTGTTGATAATTATTAAGAGTAGATGAGATTTT 2260
Query 2267 ATGATTATCCCCACTAAGAATAGTTAT 2293
|||||||||||||||||||||||||||
Sbjct 2261 ATGATTATCCCCACTAAGAATAGTTAT 2287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90692873345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5