BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13800.1
Length=2652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920264 jgi|Araly1|920264|scaffold_101545.1 3784 0.0
Ahg920295 jgi|Araly1|920295|scaffold_101576.1 246 5e-64
Ahg932992 jgi|Araly1|932992|scaffold_400980.1 75.0 3e-12
> Ahg920264 jgi|Araly1|920264|scaffold_101545.1
Length=2693
Score = 3784 bits (2049), Expect = 0.0
Identities = 2463/2664 (92%), Gaps = 24/2664 (1%)
Strand=Plus/Plus
Query 1 ATGCGGGTTTTTCCGA-TTCCATTACTCTCACATGTGAGAGGATTGATTCGACA-AGGAC 58
||||||||| | |||| || ||||||||||||||||||||||| |||||||| | |||||
Sbjct 22 ATGCGGGTTATCCCGAGTT-CATTACTCTCACATGTGAGAGGACTGATTCGA-AGAGGAC 79
Query 59 CCTCTTCGCGATTCTACGTGGTTCCTGCACTTGCCCGGACAAACCTTACAATCTCACACT 118
|||||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 80 CCTCTTCGCGATGGTACGTGGTTCCTGCACTTTCCCGGACGAACATTACAATCTCACACT 139
Query 119 CTGAGCAAGTAAAAGAAGGTACTTTTGATTATAAAGCATTGGAGTTAAATGACATTGGGG 178
| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 140 CAGAGCAAGTGAAAGAAGGTACCTTTGATTATAAAGCATTGGAGTTAAATGAAATTGGGG 199
Query 179 TTCTTCGTGTGTTGAATAGTATGAAAGATGATCCTTATCTTGCTTTATCGTTTCTCAAAC 238
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 200 TTCTTCGAGTATTGAATAGTATGAAGGATGATCCTTATCTTGCTTTATCGTTTCTCAAAC 259
Query 239 GAATTGAAGGAAATGTGACTTTGCCTAGTGTCCAAGCTTATGCAACTGTTATCAGAATCG 298
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 260 GAATTGAAGGAAATGTGGCTTTGCCTAGTGTCCAAGCTTATGCAACTGTTATCAGAATTG 319
Query 299 TTTGTGGTTGGGGTTTGGATAAGAAATTGGATACTTTTCTATTTGAACTCGTTAGAAGAG 358
|||||||||||||||| ||| ||||| |||||||||||||| | ||||||||||||| ||
Sbjct 320 TTTGTGGTTGGGGTTTAGATCAGAAACTGGATACTTTTCTAGTGGAACTCGTTAGAAAAG 379
Query 359 GAGATGAGGGACGCGGTTTCAGTGTAATGGATTTGTTAAAGGCCATTGGAGAAATGGAAC 418
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 380 GAGATGAGGGACGCGGTTTCAGTGTTATGGATTTGTTAAAGGCCATTGGAGAAATGGAGC 439
Query 419 AGTCATTGGTGTTGTTGATTCGAGTCTCCACTGCATTGGTTAAAGCCTATGCTAATCTTG 478
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 440 AGTCATTGGTGTTGTTGATACGGGTCTCCACTGCATTGGTTAAAGCCTATGCTAATCTTG 499
Query 479 ATATGTTTGACGAAGCTATTGATATTTTCTTCCGAGCTTACT-ATTCTCTAGGACGTGCT 537
| |||||||| |||||||| |||||||| || | | |||| | |||| ||||||||||||
Sbjct 500 AAATGTTTGAGGAAGCTATCGATATTTTTTTTCAAACTTA-TCATTCCCTAGGACGTGCT 558
Query 538 CCGGATATAAAGGCATTGAATTTTTTGATCAGCCGTATGATTGCATCTGGGAGAAGTGAT 597
||||||||||||||||||||| ||||||| | |||||||||||| |||||||||| ||||
Sbjct 559 CCGGATATAAAGGCATTGAATGTTTTGATGAACCGTATGATTGCTTCTGGGAGAACTGAT 618
Query 598 ATGGTGGTTGGTTTTTTCTGGGAAATAGAGCGTCTCGGG-TTGGATGCAGATGCACATAC 656
|||||||||||| ||||||||||||||||| | || ||| |||||||| |||||||||||
Sbjct 619 ATGGTGGTTGGTGTTTTCTGGGAAATAGAGAGGCT-GGGTTTGGATGCGGATGCACATAC 677
Query 657 TTATGTTCTTGTGGTTCAAGCATTGTGGAGGAATGATGATAAGGAAGAATTAGAGAAGCT 716
||||| || ||||||||||||||||| |||||||| ||||| |||| |||| |||||
Sbjct 678 ATATGTGCTGGTGGTTCAAGCATTGTGTAGGAATGAGGATAAAGAAGGGGTAGATAAGCT 737
Query 717 TCTTAGTAGACTGTTAATCTCAGAGACTAGGAACCCTTGCGTATTTTATTTGAATTTTAT 776
||||| ||||||||||| ||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct 738 TCTTATTAGACTGTTAAACTCAGAGACGAGGAATCCTTGCGTGTTTTATTTGAATTTCAT 797
Query 777 TGAAGGACTGTGTTTGAATCAGATGACAGATATAGCTTATTTTCTACTCCAACCATTGAG 836
||||||||| ||||| ||||||||| ||| || || ||| |||||||||||||||||||
Sbjct 798 TGAAGGACTATGTTTAAATCAGATGGCAGGCATGGCGTATCTTCTACTCCAACCATTGAG 857
Query 837 GGATGCAAATATTCTGGTGGATAAGAGTGATCTTGGAATTGCATATCGCAAAGTGGTGCG 896
||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 858 GGAAGTGAATATTCTGGTGGATAAGAGTGATCTTGGAATTGCATATCGCAGAGTGGTTCG 917
Query 897 TGGTTTATGTTATGAGATGAGAATAGAAGACGCTGAAAGTG-TTGTTCTTGACATGGAGA 955
|||||||||| ||||||||||||||||||| ||||||| | || ||||||||||||||
Sbjct 918 TGGTTTATGTAATGAGATGAGAATAGAAGATGCTGAAAAAGCTT-TTCTTGACATGGAGG 976
Query 956 AACATGGGATTGATCCGGATGTCTATGTTTACTCGGCGATAATTGAGGGACATCGCAAGA 1015
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 AGCACGGGATTGATCCGGATGTCTATGTTTACTCGGCGATAATTGAGGGACATCGCAAGA 1036
Query 1016 ATATGAATATACCTAAAGCTGTGGATGTTTTTAACAAAATGTTGAAGAAAAGAAAAAGAA 1075
||||||||||||||||||| | ||| |||||||||||||| || ||||| |||||||||
Sbjct 1037 CTATGAATATACCTAAAGCTTTTGATATTTTTAACAAAATGGTGGAGAAAGGAAAAAGAA 1096
Query 1076 TAAACTGTGTGATTGTAAGCTCAATCCTTCAATGCTATTGTCAGATGGGAAATTTCTC-G 1134
|||| |||||||||| ||| || |||||||| |||| ||||||||||||||||||||| |
Sbjct 1097 TAAATTGTGTGATTGGAAGTTCGATCCTTCAGTGCTGTTGTCAGATGGGAAATTTCTCAG 1156
Query 1135 GAAGCTTATGATCTATTTAAAGAGTTTAGAGAGACGAACATTTCTCTTGATAGAGTTTGC 1194
| |||||||||||| ||| |||||||||||||| ||||||| |||||||||| ||||||
Sbjct 1157 G-AGCTTATGATCTGTTTGAAGAGTTTAGAGAGTTGAACATTCCTCTTGATAGGGTTTGC 1215
Query 1195 TACAATGTTGCATTTGATGCTTTGGGAAAGCTTGGCAAAGTAGAAGAAGCTATTGAGTTG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1216 TACAATGTTGCATTTGATGCTTTGGGAAAGCTTGGCAAAGTAGAAGAAGCTATTGAGCTG 1275
Query 1255 TTCAGAGAAATGACGGGTAAAGGAATAGCTCCTGATGTCATCAACTACACGACTTTGATA 1314
||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1276 TTCCGAGAAATGACGGGTAAAGGAATAGCTCCTGACGTCATCAACTACACGACGTTGATA 1335
Query 1315 GGGGGTTGCTGTCTACAAGGTAAATGTTCTGATGCCTTTGATTTGATGATTGAAATGGAC 1374
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1336 GGTGGTTGCTGTCTACAAGGTAAATGTTCTGATGCTTTTGATTTGATGATTGAAATGGAC 1395
Query 1375 GGAACAGGTAAAACACCTGATATTGTTATATATAACGTACTTGCTGGTGGATTGGCTACG 1434
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1396 GGATCAGGTAAAACACCTGATATTGTTATATATAACGTACTTGCTGGTGGATTGGCTAGG 1455
Query 1435 AATGGTCTTGCACAAGAGGCA-TTCGAAACTCTGAAAATGATGGAAAATCGGGGTGTAAA 1493
||||||||| | ||||||||| || |||||| ||||| |||||||| ||||||| |||||
Sbjct 1456 AATGGTCTTACCCAAGAGGCACTT-GAAACTTTGAAACTGATGGAAGATCGGGGGGTAAA 1514
Query 1494 ACCCACTTATGTTACACACAACATGGTCATTGAAGGCCTGATTGATGCAGGTGAACTAGA 1553
|||||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||
Sbjct 1515 ACCCACTTATGTTACACAAAATATGGTCATTGAAGGCCTGATTGTTGCAGGTAAACTAGA 1574
Query 1554 CAAGGCTGAAGCTTTCTATGAGAGTTTGGAACATAAATCTCGGGAAAACGATGCAAGTAT 1613
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1575 CAAGGCTGAAGCTTTCTATGAGAGTTTGGAACATAAGTCTCGGGAAAATGATGCAAGTAT 1634
Query 1614 GGTGAAGGGTTTTTGTGCCGCTGGCTGTCTTGATCATGCCTTTGAACGATTCATTAGACT 1673
||| || || | ||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1635 GGTTAAAGGCTATTGTGAAGCTGGCTGTCTTGATCAGGCATTTGAACGATTCATTAGACT 1694
Query 1674 GGAATTTCCTCTGCCCAAGAGTGTGTATTTTACTCTATTCACTAGTCTTTGCGCCGAGAA 1733
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1695 GGAATTTCCTCTGCCCAAGAGTGTGTATTTTACTCTATTCACTAGTCTTTGCTCTGAGAA 1754
Query 1734 AGATT-ATATCAGCAAAGCTCAAGACTTACTGGATAGAATGTGGAAACTTGGAGTCGAAC 1792
|| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1755 -GAATCATATCAGCAAAGCTCAAGACTTACTGGATAGAATGTGGGAACTTGGAGTCGAAC 1813
Query 1793 CTGAGAAGAGCATGTATGGAAAGTTAATTGGTGCTTGGTGTCGAGTTAATAATGTGAGAA 1852
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1814 CTGAGAAGAGCATGTATGGAAAGTTAATTGGTGCATGGTGTCGAGTTAATAATGTGAGAA 1873
Query 1853 AAGCCCGGGAGTTTTTTGAAATTTTAGTTACTAAAAAGATTGTCCCTGATTTGTTCACTT 1912
|||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1874 AAGCCCGGCAGTTTTTTGAAATTTTAGTTACTAATGAGATTATCCCTGATTTGTTCACTT 1933
Query 1913 ATACAATCATGATTAACACCTATTGCCGGTTAAACGAGCCGAAGCAAGCCTATGCTCTTT 1972
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1934 ACACAATCATGATTAACACCTATTGCCGGTTAAACGAGCTGAAGCAAGCCTATGCTCTTT 1993
Query 1973 TTGAAGACATGAAGAGGAGAGATGTCAAACCTGATGTGGTAACATACTCAGTTTTACTCA 2032
|| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1994 TTCAAGACATGAAGAGGAGAGATGTCAAGCCTGATGTGGTAACATACACAGTTTTACTCA 2053
Query 2033 ATAGCGATCCAGAGTTGGATATGAAGAGGGAAATGGAAGCCTTTGATGTTATTCCAGACG 2092
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2054 ATAGCAATCCAGAGTTGGATATGAAGAGGGAAATGGAAGCCTTTGATGTTAAACCAGACG 2113
Query 2093 TCGTCT-ACTACACAATCATGATTAACAGATATTGCCATTTAAACGACCTGAAGAAAGTC 2151
| |||| | ||||||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct 2114 TTGTCTTA-TACACAATCATGATTAACAGATATTGCCAGTTAAACGACGTGAAGAAAGCC 2172
Query 2152 TATGCTCTTTTTAAAGACATGAAGAGGAGAGAAATCGTACCTGATGTGGTAACATACACA 2211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2173 TATGCTCTTTTTAAAGACATGAAGAGGAGAGAAATCGTACCTGATGTGGTAACATACACA 2232
Query 2212 GTTTTACTCAAAAACAAACCAGAAC-GGAATCTTTCAAGGGAAATGAAAGCCTTTGATGT 2270
||||| ||||||||||| ||||||| ||| |||| | |||||||||||||||||||||||
Sbjct 2233 GTTTTGCTCAAAAACAATCCAGAACTGGA-TCTTACGAGGGAAATGAAAGCCTTTGATGT 2291
Query 2271 TAAACCAGACGTTTTCTACTACACGGTTTTGATTGATTGGCAGTGCAAGATTGGGGATCT 2330
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2292 TAAACCAGACGTTTTCTACTACACAGTTTTGATTGATTGGCAGTGCAAGATTGGTGATCT 2351
Query 2331 TGGAGAGGCGAAAAGAATTTTTGATCAAATGATCGAGAGTGGGGTGGATCCTGATGCTGC 2390
| ||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2352 TAGAGAGGCGAAAGGAATCTTTGATCAAATGATCGAAAGTGGGGTGGATCCTGATGCTGC 2411
Query 2391 GCCTTACACAGCACTAATAGCTTGTTGCTGTAAGATGGGATATCTTAAAGAGGCAAAAAT 2450
||||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||||
Sbjct 2412 ACCTTACACAGCACTAATAGCTGGTTGTTGTAAGATGGGAAATCTTAAAGAGGCGAAAAT 2471
Query 2451 GATCTTTGATC-GAATGATTGAAAGTGGGGTAAAGCCTGATGTTGTGCCTTACACAGCGT 2509
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct 2472 GATCTTTGATCTGA-TGATTGAAAGTGGGTTAAAGCCTGATTTTGTGTCTTACACAACAC 2530
Query 2510 TAATAGCTGGTTGTT-GTAGGAATGGATTTGTACTTAAGGCAGTCAAACTTGTGAAAGAG 2568
|||||||||||| || |||||||||| ||||||| ||||||| ||| |||| ||||||||
Sbjct 2531 TAATAGCTGGTT-TTCGTAGGAATGGGTTTGTACGTAAGGCATTCACACTTATGAAAGAG 2589
Query 2569 ATGTTGGAAAAGGGGATTAAGCCGACTAAAGCTTCTCTGTCTGCAGTACACTATGCTAAA 2628
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 2590 ATGTTGGAAAAGGGGATTAAGCCGACTGAAGCTTCCCTGTCTGCAGTACACTATGCTAAA 2649
Query 2629 TTAAAGGCCAAGGGACTCCGATGA 2652
| ||||||||||||||||||||||
Sbjct 2650 TCAAAGGCCAAGGGACTCCGATGA 2673
Score = 198 bits (107), Expect = 2e-49
Identities = 169/198 (85%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 2101 TACACAATCATGATTAACAGATATTGCCATTTAAACGACCTGAAGAAAGTCTATGCTCTT 2160
||||||||||||||||||| ||||||| |||||||| |||||| ||| ||||||||||
Sbjct 1933 TACACAATCATGATTAACACCTATTGCCGGTTAAACGAGCTGAAGCAAGCCTATGCTCTT 1992
Query 2161 TTTAAAGACATGAAGAGGAGAGAAATCGTA-CCTGATGTGGTAACATACACAGTTTTACT 2219
||| ||||||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct 1993 TTTCAAGACATGAAGAGGAGAGATGTC-AAGCCTGATGTGGTAACATACACAGTTTTACT 2051
Query 2220 CAAAAACAAACCAGAAC-GGAATCTTTCA-AGGGAAATGAAAGCCTTTGATGTTAAACCA 2277
||| | ||| ||||| ||| | | | ||||||||| ||||||||||||||||||||
Sbjct 2052 CAATAGCAATCCAGAGTTGGA-TATGA-AGAGGGAAATGGAAGCCTTTGATGTTAAACCA 2109
Query 2278 GACGTTTTCT-ACTACAC 2294
|||||| ||| | |||||
Sbjct 2110 GACGTTGTCTTA-TACAC 2126
> Ahg920295 jgi|Araly1|920295|scaffold_101576.1
Length=967
Score = 246 bits (133), Expect = 5e-64
Identities = 188/215 (87%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 2432 ATCTTAAAGAGGCAAAAATGATCTTTGATCG-AATGATTGAAAGTGGGGTAAAGCCTGAT 2490
||||| ||||||| ||| |||||||| | | ||||||||||||||| | ||||||||
Sbjct 718 ATCTTCAAGAGGCGGAAAGGATCTTTGCT-GAAATGATTGAAAGTGGATTGGAGCCTGAT 776
Query 2491 GTTGTGCCTTACACAGCGTTAATAGCTGGTTGTTGTAGGAATGGATTTGTACTTAAGGCA 2550
|||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||
Sbjct 777 GTTGTGCCGTACACAGCACTAATAGCTGGTTGTTGTAGGAATGGATTCGTACATAAGGCG 836
Query 2551 GTCAAACTTGTGAAAGAGATGTTGGAAAAGGGGATTAAGCCGACTAAAGCTTCTCTGTCT 2610
|||| |||| || ||||||||| ||||||||| ||| |||| ||||||||||| ||||||
Sbjct 837 GTCACACTTATGCAAGAGATGTGGGAAAAGGGTATTGAGCCAACTAAAGCTTCCCTGTCT 896
Query 2611 GCAGTACACTATGCTAAATTAAAGGCCAAGGGACT 2645
|||||||||||||||| ||||||||||||| ||||
Sbjct 897 GCAGTACACTATGCTATATTAAAGGCCAAGAGACT 931
> Ahg932992 jgi|Araly1|932992|scaffold_400980.1
Length=2438
Score = 75.0 bits (40), Expect = 3e-12
Identities = 57/65 (88%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 2156 CTCTTTTTAAAGACATGAAG-AGGAGAGAAATCGTACCTGATGTGGTAACATACACAGTT 2214
|||||||| | ||||||||| | ||||| ||| |||||||||||||||||||||||||
Sbjct 1957 CTCTTTTTGAGGACATGAAGCA-GAGAGGAATAAAACCTGATGTGGTAACATACACAGTT 2015
Query 2215 TTACT 2219
|||||
Sbjct 2016 TTACT 2020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100024983370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5