BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13810.1
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312387 jgi|Araly1|312387|fgenesh1_pm.C_scaffold_1001167 1282 0.0
> Ahg312387 jgi|Araly1|312387|fgenesh1_pm.C_scaffold_1001167
Length=1881
Score = 1282 bits (694), Expect = 0.0
Identities = 820/881 (93%), Gaps = 7/881 (1%)
Strand=Plus/Plus
Query 80 GCACGTGATGATTTATCTTACTGTCATCGTCTGTTGCACATTCCGTATAACGAACCAGAG 139
||| ||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 98 GCA-GTGATGATTTAGCTTACTGCCATCGTTTGTTGCACATTCCAAATAACGAACCAGAG 156
Query 140 CCTGACTCAAAGGCAATTTCTGAAATCGTTGGTATAGTTTCAAAGAAAGAAGAAGCTGTA 199
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 157 TCTGACTCAAAGGTAATTTCTGAAATCATTGGTATAGTTTCAAAGAAAGAAGAAGCTGTA 216
Query 200 GTAGTTACGGAACCAACTCATCATTGGCGTAAGAATTGGGAAGATTTGAGAAAGAATAGG 259
|||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 217 GTAGTTACGGAATCAACTCAGCATTGGCGTAAGAATTGGCAAGATTTGAGAAAGAATAGG 276
Query 260 TTAACAGCTAGTAATTTCGCGCGTGCTATCGGATTTTCGCCTGACGGTAGACGAAATCTT 319
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TTAACAGCTAGTAATTTCTCGCGTGCTATCGGATTTTCGCCTGACGGTAGACGAAATCTT 336
Query 320 TGGTTAGAGAAAATCGGGGCAGCGAAACCGTTTGCTGGAAACCGAGCTACGTTTTGGGAC 379
|||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 337 TGGTTAGAGAAAATTGGGGCAGCAAAACCGTTTGCTGGGAACCGAGCTACGTTTTGGGAT 396
Query 380 ATTGAGAATGAGGTCGAAGCACTCGAGAGGTACAAC-GAGTTAACGGGAAATGAAATCCT 438
||||||||||| | |||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 397 GTTGAGAATGAGATTGAAGCACTCGAGAGATAC-ACTGAGTTAACGGGAAATGAAATCCT 455
Query 439 CATACCTGAGTTTGTTGTTTATAAGAATGGTGAAAGCCCTGAAGAAAACTGGTTAGGAGC 498
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 456 CATACCTGAGTTTGTTGTTTATAAGAATGGTGAAAATCCTGAAGAAAACTGGTTAGGAGC 515
Query 499 TTCTCCTGATGGAGTGATCAATGTAGTTAAGGACGGTGTTACTTCGTGTGGTGTGTTAGA 558
|||||||||||||||||| ||||||||||| |||||||| |||||| | |||||||||||
Sbjct 516 TTCTCCTGATGGAGTGATTAATGTAGTTAAAGACGGTGTCACTTCGAGGGGTGTGTTAGA 575
Query 559 AGTGAAATGCCCGTTTGATAACCGGGATAACTCG-AAAGTTTATCCGTGGAAGAAGGTTC 617
|||||||||||||||| |||| ||| || |||| ||| | ||||| |||||||||||||
Sbjct 576 AGTGAAATGCCCGTTTAATAATGGGGGTACCTCGCAAA-TGTATCCATGGAAGAAGGTTC 634
Query 618 CTTATAATTGTGTTCCACAACTTCAGGGTTTAATGGAGATTGTGGATACAGATTGGTTGG 677
|||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 635 CTTATATTTGTGTTCCGCAAGTTCAGGGTTTAATGGAGATTGTGGATACAGATTGGTTGG 694
Query 678 ATTTGTATTGTTGGACTCGCAATGGAAGCAGTCTCTTTAGAGTTTGGCGTGATACCGCGT 737
|||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 695 ATTTATATTGTTGGACTCGCAATGGAAGTAGCCTCTTTAGAGTTTGGCGAGATACCGCGT 754
Query 738 TTTGGGAGGATATGAAACCGGCACT-GTTTGATTTTTGGCAGAATCATGTTTTACCTGCA 796
||||||| ||||||||||| ||||| ||| ||||| |||||||| |||||||||||||||
Sbjct 755 TTTGGGAAGATATGAAACCAGCACTTGTT-GATTTCTGGCAGAAGCATGTTTTACCTGCA 813
Query 797 AGAGAGATATACAATAACTTTGATATAAAGGATCCTCAAGTGAAGCTGAGAGAGTTTAAA 856
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 814 AGAGAGATATACAATAACGTTGATATAAAGGATCCTCAAGTGAAGCTGAGAGAGTTTATG 873
Query 857 CCGAAGCATTGGCATGAAGATTGCAAGAAGATTATGCGTGGAGCTGAGAGAATCAGCGCA 916
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 874 CCGAAGCATTGGCATGAAGATTGCAAGAAGATTATGCGTGGAGCTGAAAGAATCAGCGAA 933
Query 917 AACGCAAACCGTTTGTTCTATGAGATCGATGGGAATCTTGT 957
|| || ||||||||||||||||| ||||| |||||||||||
Sbjct 934 AATGCGAACCGTTTGTTCTATGAAATCGACGGGAATCTTGT 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44375075388
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5