BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13820.1
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312387 jgi|Araly1|312387|fgenesh1_pm.C_scaffold_1001167 948 0.0
Ahg334678 jgi|Araly1|334678|fgenesh1_pg.C_scaffold_1001243 331 7e-90
> Ahg312387 jgi|Araly1|312387|fgenesh1_pm.C_scaffold_1001167
Length=1881
Score = 948 bits (513), Expect = 0.0
Identities = 567/594 (95%), Gaps = 0/594 (0%)
Strand=Plus/Plus
Query 502 TTTTGGAAGTCTCATATTAAAAGGCCTGTGGTTTTGGTTGGTCCGAGCCTCGGTGCTGCT 561
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1288 TTTTGGAAGTCTCATATTGAAAGGCCTGTGGTTTTGGTTGGGCCGAGCCTCGGTGCTGCT 1347
Query 562 GTCGCAATTGACATTGCGGTCAACCATCCAGAAGCGGTTGAGTCCTTGGTTTTAATGGAC 621
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1348 GTCGCAATTGACATTGCGTTCAACCATCCAGAAGTGGTTGAGTCCTTGGTTTTAATGGAC 1407
Query 622 GCAAGCGTTTACGCAGAAGGTACTGGAAACTTGGCAACGTTACCTAAAGCAGCAGCTTAT 681
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1408 GCAAGCGTTTACTCAGAAGGTACTGGAAACTTGGCAACGTTACCCAAAGCAGCAGCTTAT 1467
Query 682 GCTGGGGTGTATCTTCTAAAGAGTATTCCATTACGGTTATACGTTAACTTCATATGTTTC 741
|||||||| ||||| || |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1468 GCTGGGGTATATCTACTGAAGAGTATTCCATTACGGTTATACGTAAACTTCATTTGTTTC 1527
Query 742 AATGGTATCTCATTGGAAACTAGTTGGGACTGGACAAAGATTGGTCGCTTGCATTGTCTA 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 AATGGTATCTCATTGGAAACTAGTTGGGACTGGACAAAGATTGGTCGCTTGCATTGTCTA 1587
Query 802 TATCCTTGGTGGGAAGATGCAACTGTTAGTTTTATGACTAGCGGAGGATACAACGTAACT 861
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1588 TATCCTTGGTGGGAAGATGCAACTGTTAGTTTCATGACGAGCGGAGGATACAACGTAACT 1647
Query 862 TCTCTTATAAAAAAGGTTTCACAGAAGACATTGATACTATGGGGAGAGGATGACCAAATC 921
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1648 TCTCTTATAAAAAAGGTTTCACAGAAGACATTAATACTGTGGGGAGAGGATGACCAAATC 1707
Query 922 ATTAGCAACAAGCTCGCTTGGAGACTGCACGGAGAATTATCGAATGCACGTGTCAAACAA 981
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1708 ATTAGCAACAAGCTCGCTTGGAGACTGCATGGAGAGTTATCGAATGCACGTGTGGAACAA 1767
Query 982 ATATCTAACTGTGGACATCTTCCCCATGTCGAAAAGCCGGCTGCTGTCACTAAACTTATA 1041
||||| |||||||||||||||||||| ||| |||| ||||||||||| ||||||||||
Sbjct 1768 ATATCAAACTGTGGACATCTTCCCCACGTCAAAAAACCGGCTGCTGTTGCTAAACTTATC 1827
Query 1042 GCAGAGTTTGTTAGAGAGACTTGCCGGTGTAAAGAGGTTGAAAGTATATCTTAG 1095
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1828 GCAGAGTTTGTTAGAGAGACGTGCCGGTGTAAAGAGGTTGAAAGTATATCTTAG 1881
Score = 396 bits (214), Expect = 2e-109
Identities = 293/328 (89%), Gaps = 18/328 (5%)
Strand=Plus/Plus
Query 124 GTGGAATGTACAATCAAAAGGACGTTTAAAGTGACGGCGGAGAAGTTTCCGACGTTTCTG 183
|||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 973 GTGGAATGTACAATGAAAAGGCCGTTTAAAGTAACGGCGGAGAAGTTTCCGACGTTTCTG 1032
Query 184 CCGACCGATGTCGAGAAAATTAAAGACACGTTTGCTCTAAAGCTCGCCGCCAGAATAGAG 243
|||| |||||| |||| ||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 1033 CCGAGCGATGTTGAGAGAATCAAAGACACGTTTGCTCTAAAGCTCGCCACCAGAATCGAG 1092
Query 244 AGGCTTCCTGTATCTGTGAGCTTCAGGGAAGATAGTATTATGAGCAGTTGCGTGACACCG 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1093 AGGCTTCCTGTATCTGTGAGCTTCAGGGAAGATAGTATTATGAGTAGTTGCGTGACACCG 1152
Query 304 CTGATGCGGAACGAGACAACTCCTGTTGTGCTTCTTCACGGATTTGATAGTTCTTGTTTA 363
|| || ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1153 CTAATTCGGAACGGGACAACTCCTGTTGTGCTTCTTCACGGATTTGATAG---------A 1203
Query 364 GAGTGGAGATACACTTATCCGTTGCTTGAAGAAGCCGGTTTAGAAACATGGGCATTTGAT 423
| | ||||||||| ||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1204 ---T--A----CACTTATCCATTGCTAGAAGAAGCTGGTTTAGAAACGTGGGCATTTGAT 1254
Query 424 ATCCTTGGTTGGGGTTTTTCTGATTTAG 451
||||||||||||||||||||||||||||
Sbjct 1255 ATCCTTGGTTGGGGTTTTTCTGATTTAG 1282
> Ahg334678 jgi|Araly1|334678|fgenesh1_pg.C_scaffold_1001243
Length=384
Score = 331 bits (179), Expect = 7e-90
Identities = 209/223 (94%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 876 GGTTTCACAGAAGACATTGATACTATGGGGAGAGGATGACCAAATCATTAGCAACAAGCT 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 GGTTTCACAGAAGACATTGATACTATGGGGAGAGGATGACCAAATCATTAGCAACAAGCT 221
Query 936 CGCTTGGAGACTGCACGGAGAATTATCGAATGCACGTGTCAAACAAATATCTAACTGTGG 995
||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 222 CGCTTGGAGACTGCATGGAGAGTTATCGAATGCACGTGTTGAACAAATATCAAACTGTGG 281
Query 996 ACATCTTCCCCATGTCGAAAAGCCGGCTGCTGTCACTAAACTTATAGCAGAGTTTGTTAG 1055
|||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||
Sbjct 282 ACATCTTCCCCACGTCGAAAAACCGGCTGCTGTTGCTAAACTTATCGCAGAGTTTGTTAG 341
Query 1056 AGAGACTTGC--C-GGTGTAAAGAGGTTGAAAGTATATCTTAG 1095
|||||| ||| | |||||||||||||||||||||||||||||
Sbjct 342 AGAGACGTGCAGCAGGTGTAAAGAGGTTGAAAGTATATCTTAG 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48072998337
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5