BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13830.1
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471542 jgi|Araly1|471542|fgenesh2_kg.1__1496__AT1G13830.1 1190 0.0
Ahg936143 jgi|Araly1|936143|scaffold_500334.1 239 3e-62
> Ahg471542 jgi|Araly1|471542|fgenesh2_kg.1__1496__AT1G13830.1
Length=808
Score = 1190 bits (644), Expect = 0.0
Identities = 760/814 (93%), Gaps = 15/814 (2%)
Strand=Plus/Plus
Query 7 TAACTTCTCTCTCCAAAGCCATCATCTTAATTAGTTTTGGTTAGTACCTGCAGGTTCTTG 66
||||||||||||| |||||||||||||| | | ||||||||||||||| ||||||||
Sbjct 1 TAACTTCTCTCTCTAAAGCCATCATCTT-A--A-TTTTGGTTAGTACCT---GGTTCTTG 53
Query 67 GTTTTTAAAGTCAAAGTCTCTTTTGTGCTTCTCGTAAAGAGCGATCATGAAAGTGCTTCT 126
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 54 GTTTTGAAAGTCAAAGTCTCTTTTGTGCTTCTCCTAAAGAGCGATCATGAAAGTGCTTCT 113
Query 127 CGGTCTTTTGCTTCTCTTGTCCTTGACCAATTCTTCAAGTGCAATTTACTGTCTCTGTAA 186
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||
Sbjct 114 GGGTCTTTTGCTTCTCTTGGCCTTGACCAAATCTTCAAGTGCAATTTACTGTCTCTGCAA 173
Query 187 AGATGGGATAGGAGACACAGAGCTTCAAACATCAATAGACTATGCATGTGGAACCTTAGC 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 174 AGATGGGATAGGAGACACAGAGCTTCAAACATCAATAGACTATGCATGTGGAACTTTAGC 233
Query 247 TGATTGTAATCCTATACATGATAAGGGTACTTGTTATCAACCAGACACCATCAAAAGCCA 306
||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||
Sbjct 234 AGATTGTAATCCTATACATGATAACGGTTCTTGTTTTCAACCAAACACCATCAAAAGCCA 293
Query 307 CTGTGATTGGGCTGTGAATAGCTACTTCCAAAACGCAGCTCAAGTCCCTGGAAGCTGCAA 366
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CTGTGATTGGGCTGTTAACAGCTACTTCCAAAACGCAGCTCAAGTCCCTGGAAGCTGCAA 353
Query 367 TTTCTCTGGCACTGCCACTACCAATCCAAACCCACCTTCCAATTTGGCTAATGGTTGCAT 426
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TTTCTCCGGCACTGCCACTACCAATCCAAACCCACCTTCCAATTTGGCTAATGGTTGCAT 413
Query 427 CTATCCGTCAAGCCCTAGCTCTACTAGGTCTCCTCCATCAACAACACCACCAACGGGAAC 486
|||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 414 CTATCCTTCAAGCGCTAGCTCTACAAGGTCGCCTCCATCAACAACACCACCAACGGGAAG 473
Query 487 ---AAC---TCCCACAAACGGAACCACTCCATTTCCGGGAACTCCATTTCCAGGAACACC 540
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 474 TGGAACACCTCCCACAAACGGAACCACTCCATTTCCGGGAACTCCATTTCCAGGAACTCC 533
Query 541 GTTCCCGGGAACTCCTCCGGTGTTTGGTCCAACCGGAGTCTTCAACCCAAGCAACCCAGG 600
||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 534 GTTTCCAGGAACTCCTCCGGTTTTTGGTCCAACCGGAGTCTTTAACCCAAGCAACCCAGG 593
Query 601 CAGTGGTGCTTCAAGTTTGGGCACCTCCTCTGTTTTCACACTCTGTTTTTCATTACTAGC 660
||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 594 CAGTGGTGCCTCAAGTTTGGTTATCTCCTCTGTTTACACACTCTGTTTTTCATTACTAGT 653
Query 661 CTTTCTATGGGGCTCTGATGTAAGGTTCGGATTTAGCCACGTGTAGAGACTA-AAAGACA 719
||||| || || |||||||||||||| |||||||||||||||||||||| | |||||||
Sbjct 654 GTTTCTTTGTGGTTCTGATGTAAGGTTTGGATTTAGCCACGTGTAGAGAC-AGAAAGACA 712
Query 720 TCCACTTGTGTTAGTCTTTGATTCTATTTTGGGTGGAACAAGAAGCTTAGGCGTTTGTTG 779
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 713 TCCACTTGTGTTAGTCTTTGATTCTGTTTTGGGTGGAACAAGAAGTTTAGGCGTTTGTTG 772
Query 780 AGCTTTCGTCTATGTAAAGGTTGCTCTAATAGAA 813
||||||||||||||||||||||||||||||||||
Sbjct 773 AGCTTTCGTCTATGTAAAGGTTGCTCTAATAGAA 806
> Ahg936143 jgi|Araly1|936143|scaffold_500334.1
Length=543
Score = 239 bits (129), Expect = 3e-62
Identities = 270/338 (80%), Gaps = 10/338 (3%)
Strand=Plus/Plus
Query 110 ATCATGAAAGTGCTTCTCGGTCTTTTGCTTCTCTTGTCCTTGACCA-ATTCTTCAAGTGC 168
||||||| | ||||||| ||||| ||| |||||||| | || |||| | | ||||||||
Sbjct 19 ATCATGAGATTGCTTCTTGGTCTCTTGTTTCTCTTGGCTTTAACCACCTAC-TCAAGTGC 77
Query 169 AATTTACTGTCTCTGTAAAGATGGGATAGGAGACACAGAGCTTCAAACATCAATAGACTA 228
|| ||| ||||| |||| |||||| || | ||| | ||| ||||||||||||||||||||
Sbjct 78 AACTTATTGTCTATGTAGAGATGGTATTGAAGAGAAAGATCTTCAAACATCAATAGACTA 137
Query 229 TGCATGTGGAACCTTAGCTGATTGTAATCCTATACATGATAAGGGTACTTGTTATCAACC 288
|||||||||| ||| |||||||||| || ||||| || ||| ||||||| |||||
Sbjct 138 TGCATGTGGAGTTTTAAAAGATTGTAATCAAATTCATGACAAAGGTCCTTGTTACCAACC 197
Query 289 AGACACCATCAAAAGCCACTGTGATTGGGCTGTGAATAGCT-ACTTCCAAA-ACGCAGCT 346
| |||| |||| || || ||||||||||| || |||| || | ||||||| | | | |
Sbjct 198 AAACACTGTCAAGAGTCATTGTGATTGGGCGGTTAATA-CTTATTTCCAAAGAT-CTGGT 255
Query 347 CAAGTCCCTGGAAGCTGCAATTTCTCTGGCACTGCCACTACCAATCCAAAC-CCACCTTC 405
|||||| |||||||||| |||||||| || ||||| ||||||| ||||| || |||||
Sbjct 256 CAAGTCTCTGGAAGCTGTAATTTCTCAGGAACTGCTACTACCAG-CCAAAATCCTCCTTC 314
Query 406 CAATT-TGGCTAATGGTTGCATCTATCCGTCAAGCCCT 442
|| | ||| || ||||||||||||||| ||||| |||
Sbjct 315 -AACTGTGGTTACTGGTTGCATCTATCCTTCAAGTCCT 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30765194019
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5