BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13860.4
Length=2629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471543 jgi|Araly1|471543|fgenesh2_kg.1__1497__AT1G13860.3 3225 0.0
Ahg896320 jgi|Araly1|896320|Al_scaffold_0005_286 1718 0.0
> Ahg471543 jgi|Araly1|471543|fgenesh2_kg.1__1497__AT1G13860.3
Length=2497
Score = 3225 bits (1746), Expect = 0.0
Identities = 1987/2100 (95%), Gaps = 30/2100 (1%)
Strand=Plus/Plus
Query 511 TGGGACCATGAAGGTTGCCTCAGTTATTGGTCTTAGACCAAGGATCAGTGGTTTACTTTT 570
||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||
Sbjct 360 TGGGACCATGAAGGTTGCCTCAGTTTTTGGTCTTAGACCACGGATCAGCGGGTTACTTTT 419
Query 571 CTTAACCCTCGGTGTTATTGCTCTCATTACCATTTTAGTACCAAATTCAGATTCTTCTTC 630
||| | | ||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 CTTGATCATCGGTGTCATTGCTCTCATTACCATTTTAGTACCAAATTCAGATGATTCTTC 479
Query 631 TACAACTTCAACTACGCGAGTACCGCCA-AGCAACATTTATAGTAACTATGGGAGGGTTA 689
||||||||||||||||||||| || ||| | ||||||||||||||||||||||||| | |
Sbjct 480 TACAACTTCAACTACGCGAGTGCCCCCACA-CAACATTTATAGTAACTATGGGAGGATAA 538
Query 690 AGGAACAAGCAGCTGTTGATTATCTAGATCTAAGGTTTTTCTCCTTAGGGGTTAATCGGT 749
|||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 539 AGGAACAAGCAGCTATTGATTACCTAGATCTAAGGTTCTTCTCCTTAGGGGTTAATCGGT 598
Query 750 TAAAAGAGTTTCCTTTATGTGGTAAAGAAAGAGACAATTATGTTCCTTGTTATAACGTAA 809
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |
Sbjct 599 TAAAAGAGTTTCCTTTATGTGGTAAAGAAAGAGACAACTATGTTCCTTGCTATAACATTA 658
Query 810 CAGAGAGTGATCGGAATTGTGAGTTTGCAAGAGAAGAGGAAAGATGTCTAGTTCGTCCTC 869
|||||| |||||||||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 659 CAGAGACTGATCGGAATTGTGAGTTTGTAAGAGAAGGGGAAAGATGTGTAGTTCGTCCTC 718
Query 870 CAAGGGATTATAAGATACCACTTAGATGGCCTGTTGGTAGAGATATCATATGGACTGGGA 929
||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 719 CAAGGGATTATAAAATACCACTTCGATGGCCTGTTGGTAGAGATATTATATGGACTGGGA 778
Query 930 ATGTGAAGATTACTAAAGATCAGTTTCTTTCATCAGGAACTATGACTAAAAGGCTAATGT 989
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 ATGTGAAGATTACTAAAGATCAGTTTCTTTCATCAGGGACTATGACTAAAAGGCTAATGT 838
Query 990 TGCTTGAAGAGAATCAAATTACGTTTCACTCGGATGATGGCTTGATCTTTGATGGGGTTA 1049
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
Sbjct 839 TGCTTGAAGAGAATCAAATTACATTTCACTCGGAAGATGGCTTGATCTTTGACGGGGTCA 898
Query 1050 AAGATTACGCTTTTCAAATTGCTGAGATGATTGGATTAGGAAGCGATACTGAGTTTCCTC 1109
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 899 AAGATTACGCTTTTCAAATTGCTGAGATGATTGGATTAGGAAGCGATATTGAGTTTCCTC 958
Query 1110 AAGCTGGTATACGGACTGTGTTGGACATCGGTTGCGGATTTGGTAGCTTTGGTGCACATC 1169
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 959 AAGCTGGTATACGGACTGTGTTAGACATCGGTTGCGGATTTGGTAGCTTTGGTGCACATC 1018
Query 1170 TAGTGTCTTTGAACGTGATGCCTATATGTATAGCAGAGTATGAGACAAGTGGAAGCCAAG 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TAGTGTCTTTGAACGTGATGCCTATATGTATAGCAGAGTATGAGACAAGTGGAAGCCAAG 1078
Query 1230 TCCAATTAGCTCTAGAGAGAGGCCTTCCTGCAATGATTGGAAATTTCTTTTCGAAACAGC 1289
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCCAGTTAGCTCTAGAGAGAGGCCTTCCTGCAATGATTGGAAATTTCTTTTCGAAACAGC 1138
Query 1290 TTCCATATCCAGCTTTATCATTTGACATGGTCCACTGTGCTCAATGTGGGATTACTTGGG 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTCCATATCCAGCTTTATCATTTGACATGGTCCACTGTGCTCAATGTGGGATTACTTGGG 1198
Query 1350 ATATAAAAGATGCAATGCTACTTTTAGAAGTGGATCGTGTTCTCAAGCCTGGGGGTTATT 1409
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 ATATAAAAGATGCAATGCTACTTTTAGAAGTGGATCGTGTTCTCAAGCCCGGGGGTTATT 1258
Query 1410 TTGTTTTGACCTCTCCTACAAGCAAAGCACAGGGAAATTCTCCTGATACTAAGAAAACAA 1469
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTGTTTTAACCTCTCCTACAAGCAAAGCACAGGGAAATTCTCCTGATACTAAGAAAACAA 1318
Query 1470 GTATCTCAACACGAGTGGATGAGTTATCTAAGAAAATCTGCTGGAGTCTCTCAGGTCAGC 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GTATCTCAACACGAGTGGATGAGTTATCTAAGAAAATCTGCTGGAGTCTCTCAGGTCAGC 1378
Query 1530 AAGATGAGACGTTTCTTTGGCAGAAAACAGCAGACCCAAATTGCTACTCATCTCGCTCGC 1589
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1379 AAGATGAGACGTTTCTTTGGCAGAAAGCAGCAGATCCAAATTGCTACTCATCTCGCTCGC 1438
Query 1590 AAGCTTCTATACCTGTTTGCAAAGATGATGATAGTGTTCCATATTACCATCCTCTTGTTC 1649
|||||||||||||| ||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1439 AAGCTTCTATACCTCTTTGCAAAGATGATGATAGTGTTCCGTATTACCAACCCCTTGTTC 1498
Query 1650 CATGTATAAGTGGAACCAAGAGTAAACGCTGGATTCCTATTCAGAATAGGTCTAGAGCTT 1709
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1499 CATGTATAAGTGGAACCAAGAGCAAACGCTGGATTCCTATTCAGAATAGGTCTAAAGCTT 1558
Query 1710 CAGGAACAAGTTTGTCTGAGCTTGAAATTCATGGTATTAAACCTGAAGAATTCGATGAGG 1769
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1559 CCGGAACAAGTTTGTCTGAGCTTGAAAATCATGGTATTAAACCTGAAGAATTCGATGAGG 1618
Query 1770 ATATACAAGTATGGAGATCAGCCCTTAAAAACTATTGGTCCTTGCTTACACCTTTGATTT 1829
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1619 ATATACAAGTTTGGAGATCAGCCCTGAAAAACTATTGGTCCTTGCTTACACCTTTGATTT 1678
Query 1830 TCTCAGACCACCCAAAAAGACCTGGCGATGAAGATCCTGTCCCACCTTTTTACATGATAC 1889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TCTCAGACCACCCAAAAAGACCTGGCGATGAAGATCCTGTCCCACCTTTTTACATGATAC 1738
Query 1890 GCAATGCTATGGACATGAATGCTCGTTATGGGAATCTGAATCAGGCCTTACTTAACCAAG 1949
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1739 GCAATGCCATGGACATGAATGCTCGTTATGGGAATCTGAATCTCGCCTTACTTAACCAAG 1798
Query 1950 GGAAATCAGTTTGGGTGATGAATGTTGTCCCAGTCAAAGCACGTAATACTCTTCCTATAA 2009
| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1799 GAAAATCAGTTTGGGTGATGAATGTTGTCCCAGTTAAAACACGTAATACTCTTCCTATAA 1858
Query 2010 TACTTGATCGAGGTTTTACCGGCGCTCTACATGACTGGTGTGAACCATTCCCTACCTATC 2069
||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1859 TACTTGATCGAGGTTTTGCCGGCGTTCTACATGACTGGTGTGAACCATTCCCTACTTATC 1918
Query 2070 CTCGAACATATGACATGCTTCATGCCAATGAACTTCTCACACATCTTAGCTCAGAACGGT 2129
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 CGCGAACATATGACATGCTTCATGCCAATGAACTTCTCACACATCTTAGCTCAGAACGGT 1978
Query 2130 GCAGCCTAATGGACTTGTTCTTGGAAATGGACCGGATTCTCCGCCCTGAGGGATGGGTTG 2189
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1979 GCAGCCTAATGGACTTGTTCTTGGAGATGGACCGGATTCTCCGCCCTGAGGGATGGGTTG 2038
Query 2190 TGCTAAGTGATAAGCTTGGAGTGATAGAGATGGCGCGTACACTTGCTGCTCGTGTACGCT 2249
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2039 TGCTAAGTGATAAGCTTGGAGTGATAGAGATGGCGCGTACATTTGCTGCTCGTGTACGCT 2098
Query 2250 GGGAAGCAAGAGTCATCGATATTCAAGACGGTAGTGACCAACGGCTCCTTGTTTGTcaaa 2309
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 2099 GGGAAGCAAGAGTCATCGATATTGAAGACGGTAGTGACCAACGGCTCCTTGTTTGCCAAA 2158
Query 2310 aaccattattaaaaaaataactcaaaagaaaa------gaagcaaaattagcaaaCTGTC 2363
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2159 AACCTTTCCTAAAAAAATAACTCAAAAGAAAAAAAAAAGAAGCAAAATTAGCAAACTGTC 2218
Query 2364 AACGAGTTTGCTTCTCTGCACCATCGACA-C--TAAGTACAGttttttt--A-ATAGATC 2417
||| ||||||||||||||||||||| ||| | |||||||||||||||| | |||| |
Sbjct 2219 AACAAGTTTGCTTCTCTGCACCATCAACAACACTAAGTACAGTTTTTTTTTATATAGTTT 2278
Query 2418 -CA-AGTAC---TGATGCTTGCAGATTCTGGAGAGAAATCAAGACGATGAAAATGGGAGA 2472
|| | | | |||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 2279 ACAGA-TCCAAATGATGCTTGCAGATTCTGGAGAGAAATCAAGAGGATGAAAATGT-AGA 2336
Query 2473 CTTCTGCGACTTTCTTAGCAGTGCAACG-GTT-ATTCAAATTACGACATTCTTTACATTT 2530
|| | ||||| |||| |||||||| | ||| || || |||||||||||||||||||||
Sbjct 2337 CTG--G-GACTTACTTACCAGTGCAA-GAGTTTAT-CAGATTACGACATTCTTTACATTT 2391
Query 2531 TTTCTGTTTGCAAACAAGAATTGTTCTCAGTTTTATTTTTT-GTTCGTTTCGTAATTATT 2589
|||||||||||||||| |||||||| | |||| |||||| ||||||||||||||||||
Sbjct 2392 TTTCTGTTTGCAAACA-GAATTGTTTTTTTTTTTTTTTTTTTGTTCGTTTCGTAATTATT 2450
Score = 344 bits (186), Expect = 2e-93
Identities = 245/271 (90%), Gaps = 14/271 (5%)
Strand=Plus/Plus
Query 1 ACAGAGCAGAAAAAGCTTACACTCATATCACTGAGCTGCTTTGGCTTCGCCAATCGCCAT 60
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 ACAGAGCAGAAAAAGCTTACACTCATATCACTGAGCT--T--GGCTTCGCCAATCGCCAT 56
Query 61 TGTTGTTTCGAAATATAATTACTGCTTCTCAAAACCCTTTTGTTGGTTTTTGTTTTCGTT 120
||||||| |||||| ||||| |||||| |||||||||||| |||| ||||||||||||||
Sbjct 57 TGTTGTT-CGAAATCTAATTTCTGCTTGTCAAAACCCTTT-GTTGATTTTTGTTTTCGTT 114
Query 121 GTCGATCATTGCTTCAATCTCTTTCCTTTCGATCTGAATCATCTGATCTCTGATCTTCTT 180
|||||||||||| |||| ||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 115 GTCGATCATTGCGTCAAGCTCCTTCCTTTCGATCTGAATCATCTGATCTCTGACCCTCTT 174
Query 181 CGAGATCTCACTAATAGGATTTTGAGATTGAGTTTTGTCCACAGAATCACGAGGTTTTGT 240
|||||||||||||||| || ||||||||||||||| ||| ||||||||||||||||||||
Sbjct 175 CGAGATCTCACTAATAAGAATTTGAGATTGAGTTT-GTCAACAGAATCACGAGGTTTTGT 233
Query 241 TGATTTGGTGTACCGTAATTGGCAATTACGA 271
||||| |||||||||||||||||||
Sbjct 234 TGATT-------CCGTAATTGGCAATTACGA 257
Score = 73.1 bits (39), Expect = 1e-11
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 384 AATGGCTTGATTAGGTAAATGTTAGTTGGAGTTTTAGGT 422
|||||||||||||||||||||||||||||||||||||||
Sbjct 294 AATGGCTTGATTAGGTAAATGTTAGTTGGAGTTTTAGGT 332
> Ahg896320 jgi|Araly1|896320|Al_scaffold_0005_286
Length=1860
Score = 1718 bits (930), Expect = 0.0
Identities = 1335/1529 (87%), Gaps = 34/1529 (2%)
Strand=Plus/Plus
Query 818 GATCGGA-ATTGTGAGTTTGCAAGAGAAG-AGGAAAGATGTCTAGTTCGTCCTCCAAGGG 875
|||| || |||||||||||| ||||| || ||||||||||| ||||||| ||||| || |
Sbjct 349 GATC-GACATTGTGAGTTTGAAAGAG-AGAAGGAAAGATGTGTAGTTCGACCTCCGAGAG 406
Query 876 ATTATAAGATACCACTTAGATGGCCTGTTGGTAGAGATATCATATGGACTGGGAATGTGA 935
||||||| ||||||||||| ||||| ||||||||||||||||||||| ||| || ||||
Sbjct 407 ATTATAAAATACCACTTAGGTGGCCACTTGGTAGAGATATCATATGGAGTGGTAACGTGA 466
Query 936 AGATTACTAAAGATCAGTTTCTTTCATCAGGAACTATGACTAA-AAGGCTAATGTTGCTT 994
||||||| ||||| ||||||||||| |||||||| |||| || ||| |||||||||||
Sbjct 467 AGATTACCAAAGACCAGTTTCTTTCGTCAGGAACCGTGAC-AACGAGGTTAATGTTGCTT 525
Query 995 GAAGAGAATCAAATTACGTTTCACTCGGATGATGGCTTGATCTTTGATGGGGTTAAAGAT 1054
||||||||||||||||| ||||||||||| || ||| || ||||||||||||| |||||
Sbjct 526 GAAGAGAATCAAATTACTTTTCACTCGGAGGACGGCCTGGTCTTTGATGGGGTCAAAGAC 585
Query 1055 TACGCTTTTCAAATTGCTGAGATGATTGGATTAGGAAGCGATACTGAGTTTCCTCAAGCT 1114
|| ||| ||||||||||||||||||||| |||||||| |||||||||||| | |||||
Sbjct 586 TATGCTCGTCAAATTGCTGAGATGATTGGTTTAGGAAGTGATACTGAGTTTGCGCAAGCG 645
Query 1115 GGTATACGGACTGTGTTGGACATCGGTTGCGGATTTGGTAGCTTTGGTGCACATCTAGTG 1174
||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 646 GGTGTACGGACTGTGTTAGACATTGGTTGCGGCTTTGGTAGCTTTGGTGCACATTTAGTG 705
Query 1175 TCTTTGAACG-TGATGCCTATATGTATAGCAGAGTATGAGACAAGTGGAAGCCAAGTCCA 1233
|||||||| | |||||||||||||||| || ||||||||| ||| ||| |||||||||||
Sbjct 706 TCTTTGAA-GCTGATGCCTATATGTATCGCTGAGTATGAGGCAACTGGGAGCCAAGTCCA 764
Query 1234 ATTAGCTCTAGAGAGAGGCCTTCCTGCAATGATTGGAAATTTCTTTTCGAAACAGCTTCC 1293
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 765 GTTAGCTCTAGAGAGAGGCCTTCCTGCAATGATTGGCAATTTCTTTTCAAAACAGCTTCC 824
Query 1294 ATATCCAGCTTTATCATTTGACATGGTCCACTGTGCTCAATGTGGGATTACTTGGGATAT 1353
|| || || || || ||||| |||||||| |||||||||||||| | ||||||||||||
Sbjct 825 TTACCCGGCATTGTCTTTTGATATGGTCCATTGTGCTCAATGTGGCACTACTTGGGATAT 884
Query 1354 AAAAGATGCAATGCTACTTTTAGAAGTGGATCGTGTTCTCAAGCCTGGGGGTTATTTTGT 1413
|||||||||||||||||||| ||||||||||||||||| || || ||||| || |||||
Sbjct 885 CAAAGATGCAATGCTACTTTTGGAAGTGGATCGTGTTCTGAAACCCGGGGGATACTTTGT 944
Query 1414 TTTGACCTCTCCTACAAGCAAAGCACAGGGAAA-TTCTCCTGATACTAAGAAAACAAGTA 1472
||| || || || |||| ||||||||| ||||| || || ||||| |||||||| || |
Sbjct 945 TTTAACTTCCCCCACAAACAAAGCACAAGGAAACTT-ACCAGATACCAAGAAAACGAGCA 1003
Query 1473 TCTCAACACGAGTGGATGAGTTATCTAAGAAAATCTGCTGGAGTCTCTCAGGTCAGCAAG 1532
|||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||| |
Sbjct 1004 TCTCAACACGGGTGGATGAGTTATCTAAGAAAATCTGTTGGAGTCTAACAGCTCAGCAGG 1063
Query 1533 ATGAGACGTTTCTTTGGCAGAAAACAGCAGACCCAAATTGCTACTCATCTCGCTCGCAAG 1592
||||||||||||||||||||||||| | ||| ||| |||||| || ||||| |||||||
Sbjct 1064 ATGAGACGTTTCTTTGGCAGAAAACTGTAGATTCAAGTTGCTATTCGTCTCGTTCGCAAG 1123
Query 1593 CTTCTATACCTGTTTGCAAAGAT-GATGATAGTGTTCCATATTACCATCCTCTTGTTCCA 1651
||||||||||| ||||||||||| || ||||||||||| |||||||| || || ||||||
Sbjct 1124 CTTCTATACCTCTTTGCAAAGATGGA-GATAGTGTTCCGTATTACCACCCACTGGTTCCA 1182
Query 1652 TGTATAAGTGGAACCA-AGAGTAAACGCTGGATTCCTATTCAGAATAGGTCTAG-AGCTT 1709
|||||||| ||||||| | |||||||||||||||||||| ||||| |||||| | | ||
Sbjct 1183 TGTATAAGCGGAACCACA-AGTAAACGCTGGATTCCTATACAGAACAGGTCT-GCTG-TT 1239
Query 1710 -CAGGAACAA-GTTTGTCTGAGCTTGAAATTCATGGTATT-AAACCTGAAGAATTCGAT- 1765
||||||||| | || ||| |||||||||||||||| || ||||| ||||||||| |
Sbjct 1240 GCAGGAACAACCTCTG-CTGGGCTTGAAATTCATGGT-TTAAAACCGGAAGAATTC-TTC 1296
Query 1766 GAGGATATACAAGTATGGAGATCAGCCCTTAAAAACTATTGGTCCTTGCTTACACCTTTG 1825
||||||| |||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 1297 GAGGATACACAAGTATGGAGATCAGCTCTGAGAAACTATTGGTCCTTGCTTACACCTTTG 1356
Query 1826 ATTTTCTCAGACCACCCAAAAAGACCTGGCGATGAAGATCCTGTCCCACCTTTTTACATG 1885
|||||||| ||||||||||| ||||| || |||||||||||| |||| |||||| |||||
Sbjct 1357 ATTTTCTCTGACCACCCAAAGAGACCCGGTGATGAAGATCCTCTCCCGCCTTTTAACATG 1416
Query 1886 ATACGCAATGCT-ATGGACATGAATGCTCGTTATGGGAATCTGAAT-CAGGCCTTACTTA 1943
|||||||||| | ||||||||||||||||||| ||||||| | ||| || |||||||||
Sbjct 1417 ATACGCAATG-TGATGGACATGAATGCTCGTTTTGGGAATTTAAATGCA-GCCTTACTTG 1474
Query 1944 ACCAAGGGAAA-TCAGTTTGGGTGATGAATGTTGTCCCAGTCAAAGCACGTAATACTCTT 2002
|| || ||||| || | |||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1475 ACGAA-GGAAAGTCCGCTTGGGTAATGAACGTTGTCCCAGTCAAGGCACGTAATACTCTT 1533
Query 2003 CCTATAATACTTGATCGAGGTTTTACCGGCGCT-CTACATGACTGGTGTGAACCATTCCC 2061
||||| ||||||||||| ||||| |||| | | ||||||||||||||||||||||||||
Sbjct 1534 CCTATCATACTTGATCGTGGTTTCGCCGGTG-TCCTACATGACTGGTGTGAACCATTCCC 1592
Query 2062 TACCTATCCTCGAACATATGACATGCTTCATGCCAATGAACTTCTCACACATCTTAGCTC 2121
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 GACATATCCTCGAACATATGACATGCTTCATGCCAATGAACTTCTCACACATCTTAGCTC 1652
Query 2122 AGAACGGTGCAGCCTAATGGACTTGTTCTTGGAAATGGACCGGATTCTCCGCCCTGAGGG 2181
|||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1653 AGAACGATGCAGCCTAATGGACTTATTCTTGGAGATGGACCGGATTCTTCGCCCTGAGGG 1712
Query 2182 ATGGGTTGTGCTAAGTGATAA-GCTTGGAGTGATAGAGATGGCGCGTACACTTGCTGCTC 2240
||||||||| ||||| || || | | ||||| || |||||||| || ||||||| ||||
Sbjct 1713 ATGGGTTGTTCTAAGCGACAAAG-TGGGAGTAATCGAGATGGCTCGCGCACTTGCAGCTC 1771
Query 2241 GTGTACGCTGGGAAGCAAGAGTCATCGATATTCAAGACGGTAGTGACCAACGGCTCCTTG 2300
| ||||| |||||| || ||||||| ||| ||||||| |||||||||||| | || || |
Sbjct 1772 GAGTACGTTGGGAATCACGAGTCATTGATCTTCAAGATGGTAGTGACCAAAGACTTCTCG 1831
Query 2301 TTTGTcaaaaaccattattaaaaaaataa 2329
| |||||||||||||| | |||||||||
Sbjct 1832 TCTGTCAAAAACCATTCCTCAAAAAATAA 1860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99148907735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5