BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13870.1
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920270 jgi|Araly1|920270|scaffold_101551.1 1526 0.0
> Ahg920270 jgi|Araly1|920270|scaffold_101551.1
Length=951
Score = 1526 bits (826), Expect = 0.0
Identities = 909/950 (96%), Gaps = 1/950 (0%)
Strand=Plus/Plus
Query 50 CAGTGTGTTTAAAAACCAATGGCGCTAGTTGTGATTTGTGGGCAACCTTGTAGTGGTAAG 109
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3 CAGTGTGTTTAAAAACCAATGGCACTAGTTGTGATTTGTGGGCAACCTTGTAGTGGTAAG 62
Query 110 TCAATAGCTGCAGTAACTTTAGCTGAAACATTGAAAGAGTCTGAAACGAAACAGAGTGTT 169
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 63 TCAATAGCTGCAGTAACTTTAGCTGAAACCTTGAAAGAGTCTGAAACGAAACAGAATGTT 122
Query 170 AGGATCATCGATGAGGCTTCGTTTCATCTAGACCGCAACCAAAACTATGCTAACATGCCT 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AGGATCATCGATGAGGCTTCGTTTCATCTAGACCGCAACCAAAACTATGCTAACATGCCT 182
Query 230 GCTGAGAAGAATCTGAGAGGAAAGCTTAGGTCAGATGTTGATAGATCAGTTTCGACAGGC 289
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 183 GCAGAGAAGAATCTGAGAGGAAAGCTCAGGTCAGATGTTGATAGATCAGTTTCGAGAGGC 242
Query 290 GAGATTGTTATTGTAGATTCCTTGAATAGTATCAAAGGTTACAGATATGAGCTATGGTGT 349
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 243 GATATTGTTATAGTAGATTCCTTGAACAGTATCAAAGGTTACAGATATGAGCTATGGTGT 302
Query 350 ATCGCTCGTGCTGCTGGGATTAGGTATTGTGTTGTTTATTGTGATGTAGATGAAGCTCAT 409
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 303 ATCGCACGTGCTGCCGGGATTAGGTATTGTGTTGTTTATTGTGATGTGGATGAAGCTAAT 362
Query 410 TGTAGGCAATGGAATAAGGAACGGAGTGATAGAGGTGAAGATGGATATGACGATGGTATA 469
|| |||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||
Sbjct 363 TGCAGGCAATGGAATAAAGAACGAAGTGATAGAGGTGAGGATGGATATGACAATGGTATA 422
Query 470 TTCGAAGATCTGGTTAGAAGATTTGAGAAACCTGAGAGAAGAAACCGATGGGATTCACCT 529
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 423 TTCGAAGATCTGGTTAGAAGATTCGAGAAACCTGAGAGAAGAAACCGATGGGATTCACCT 482
Query 530 CTCTTTGAGCTATACCCTTCTCGTGAAGTTATAGACAAATCCTCTCCTGTGATTTTAGAG 589
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||
Sbjct 483 CTCTTTGAGCTATACCCTTCTCGAGAAGTAATAGATAAATCCTCTCCTGTGATTTCAGAG 542
Query 590 GCTGTGACTTATCTAACCAAGACTGTTGACTCCAAAACCCAAGATGTGAGAATTCTCCAA 649
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 543 GCTGTGACTTATCTAACCAAGACTGTTGATTCCAAAACCCAAGATGTGAGAATTCTCCAA 602
Query 650 CCAAGTATTGCCACTCAGGCTGCTAGATTTTCAGAAGCAAATTCTCTTTACGAGTTGGAC 709
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 603 CCAAGTATTGCGACTCAGGCTGCTAGATTTTCAGAAGCGAATTCTCTTTACGAGTTGGAC 662
Query 710 AGAGCGACACAAGAAATCATCAACGCGATTGTGGAACAACAATCACTGGGCGCGGCTATA 769
|||||||||||||||||| |||||||||||||||||||||||||||| || | |||||||
Sbjct 663 AGAGCGACACAAGAAATCGTCAACGCGATTGTGGAACAACAATCACTTGGTGGGGCTATA 722
Query 770 AGCAGAGTTACTCTTGGCAATGAACTACCTCCGATTGAAATCTGCAGACCGATTGGGCTA 829
||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| ||
Sbjct 723 AGCAGAGTTACTCTTGGAAATGAACTACCTCCAATCGAAATCAGCAGACCGATTGGACTT 782
Query 830 CCGGAGCTAAGGAGGCTTCGAAGAACGTTTGTTAAATTGATGGGTCAATCGAGTCTAAGC 889
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CCGGAGCTAAGGAGGCTTCGAAGAACGTTTGTTAAATTGATGGGTCAATCGAGTCTAAGT 842
Query 890 GGTCCACCGTTACCAACTGATGCAGACAGTGCAAAGAGACGTTTTGTGGATTACTTGAAC 949
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 843 GGTCCACCATTACCAACTGATGCAGACAGTGCAAAGAGGCGTTTTGTGGATTACTTGAAC 902
Query 950 AGAGAGTTTGGAGGTAATAACGCTTGAAATTTGTTGGGTGAAAAACATCT 999
|||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 903 AGAGAGTTTGGAGGTAATAACGCTTGAAATTTGT-GGGTAAAAAACATCT 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42812035791
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5