BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13880.1
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471548 jgi|Araly1|471548|fgenesh2_kg.1__1502__AT1G13880.1 2409 0.0
> Ahg471548 jgi|Araly1|471548|fgenesh2_kg.1__1502__AT1G13880.1
Length=1674
Score = 2409 bits (1304), Expect = 0.0
Identities = 1526/1631 (94%), Gaps = 24/1631 (1%)
Strand=Plus/Plus
Query 1 ATCCGAGTTAAATCCGGGTTTCAAAATCGGGTCTTTCCCCTAATCGAAAAGCACGAATTT 60
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCCGAATTTAATCCGGGTTTCAAAATCGGGTCTTTCCCCTAATCGAAAAGCACGAATTT 60
Query 61 TCAACCCTAGCCGCTTTCGAAAATTCCCCCAATTTTAtttttttCCCCTACCAAATTTTC 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAACCCTAGCCGCTTTCCAAAATTCCCCCAATTTTATTTTTTTCCCCTACCAAATTTTC 120
Query 121 TTCGAATTTCAGCTCAGATCCCTTCCTTCTTCCAGATCGATCTTCAGATCTATTGTTTTT 180
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 121 TTCGAATTTGAGCTCAGATCCCTTCCTTCTTCCAAATCGATCTTCAGATCTATTTTTTTT 180
Query 181 TA--AGAATGGGTTTCAAGCGAACGTTTGACGCTGAAGATGTTCAAGAGCTCAACGTTAA 238
|| |||||||||| ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct 181 TATCCGAATGGGTTTTAAGCGTACTTTTGATGCTGAGGATGTGCAAGAGCTCAACGTTAA 240
Query 239 GAATGGAAGACAGATTAGTTACTGTAATAAGCTGGCCAAACTAGATGAAGGAGTTCCATA 298
| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCATGCAAGACAGATTAGTTATTGTAATAAGCTGGCCAAACTAGATGAAGGAGTTCCATA 300
Query 299 TCGTCTTTCACTGGAGAAGCCAGGTGTCGTAGGATATGATATAAGTGATCTCTACGGGTA 358
|||| |||||||||||||| || ||||||||||| ||||||||||||||||||| |||||
Sbjct 301 TCGTGTTTCACTGGAGAAGTCAAGTGTCGTAGGAGATGATATAAGTGATCTCTATGGGTA 360
Query 359 TAAATGTGAGGATAACGTTGACAAGGGGTTTGAGACCAATGCGCCTTTCTCTTGGATCAC 418
|||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct 361 TAAATGTGAGGATAACCTTGAGAAGGGGTTTGAGACCAACGCGTCTTTCTCTTGGATCAC 420
Query 419 AACTGGTTTGTCTGAGGAGGATTCTCAGTCTGGAGCTACGATTCAGTCTACCATTTCTCA 478
||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 421 AACTGGTTTGTGTGAGGAGGATTCTCAGTCTGGAGCTACGACTCAGTCTACCCTTTCTCA 480
Query 479 TGAATCTCCTGAGTCAGATATACCTTGGAGACCGGTTTGCTCTGGGGAAGAAGATGGCTA 538
|||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 481 TGAATCGCCTGAGTCGGATATACCTTGGAGACCGGTTTGCTC---GGAAGAAGATGTTTA 537
Query 539 TTGGTGTCCGATTTCTCCTAGAAAAACGGTTCCAATCGGGTCAGATTACCAGGCTGATAT 598
|||||||||| |||||||||||||||| |||||||| ||| | |||||||||||||||||
Sbjct 538 TTGGTGTCCGGTTTCTCCTAGAAAAACAGTTCCAATAGGGCCGGATTACCAGGCTGATAT 597
Query 599 TCCTGAATGTGTCAAGGAAGAGGCAAATGATCAGTCGGGTCA---AGGTGTTGGTTACGA 655
||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||
Sbjct 598 CCCTGAATGTGTCAAGGAAGAGGCAAGTGATCAGTCGGGTCAGGCAGCTGTTGATTACGA 657
Query 656 TGAAGAACAAGTGACAGGGAAGTGCGTAATTCCAATGCCTGACTGTGAAACCGAGGTCTG 715
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 TGAAGAACAAGTGACGGGGAAGTGCGTGATTCCAATGCCTGACTGTGAAACCGAGGTCTG 717
Query 716 CAAGATTGGTAAAGGAAGAAAGGAATGCATTTGCCTGGATAAAGGTTCCATCAGATGTGT 775
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAAAATTGGTAAAGGAAGAAAGGAATGCATTTGCCTGGATAAAGGTTCCATCAGATGTGT 777
Query 776 ACAGCAGCATATTATGGAAAACAGGGAAGATTTGTTTGCAACTATTGGGTACGACAGGTG 835
||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 778 GCAGCAGCATATAATGGAAAACAGGGAAGACTTGTTTGAAACTATTGGGTACGACAGATG 837
Query 836 TCTGGATATAGGTCTTTGTGAAATGGGGGAGGAAGTTGCTGCT-AGACTAACTGAAGACG 894
|||| || ||||||||| ||||||||| ||||||||||| | | || |||||||||||||
Sbjct 838 TCTGAATTTAGGTCTTTATGAAATGGGTGAGGAAGTTGCGGGTAAG-CTAACTGAAGACG 896
Query 895 AGGAAGATCTGTTTCATGAGATTGTTTACTCCAATCCGGTTTCAATGGACCGGGATTTCT 954
|||||||||| ||||| |||||||| |||||||| ||||||||||||||| |||||||||
Sbjct 897 AGGAAGATCTATTTCACGAGATTGTGTACTCCAACCCGGTTTCAATGGACAGGGATTTCT 956
Query 955 GGAAACACCTAAAGTCTGCGTTTCCTTCACGAACCATGAAGGAAATTGTGAGCTATTATT 1014
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 957 GGAAATACCTAAAGTCTGCGTTTCCTTCACGAACTATGAAGGAAATTGTGAGCTATTATT 1016
Query 1015 TCAATGTCTTTATCCTGCGAAGACGAGCTATCCAGAACCGTTCTAAAAGCCTGGATGTTG 1074
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1017 TCAATGTCTTTATCCTGCGAAGACGAGCTATCCAGAATCGTTCTAAAAGCCTGGATGTTG 1076
Query 1075 ATAGTGATGATGATGAGTGGCAAGTAGAGTATGACAACACCTTTTATGGTGCTGAAACTC 1134
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ATAGTGATGATGACGAGTGGCAAGTAGAGTATGACAACACCTTTTATGGTGCTGAAACTC 1136
Query 1135 CATCAGATGACAAAGCCGAAAAAAGCCTCTCAAGAGACGAAGGAGAAGAGGTTAATGCTA 1194
|||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1137 CATCTGATGAAAAAGCCGAAAAAAGCCTCTCAAGAGACGAAGAAGAAGAGGGTAATGCTA 1196
Query 1195 ATGAAGATTCGTACATGTCCTTTGAGAATCAGTCCAACGCAATCTACTCTCGATGTCCAG 1254
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1197 ATGAAGATTCGTACATGTCCTTTGAGTATCAGTCCAACGCAGTCTACTCTCGATGTCCAG 1256
Query 1255 TTAGAAATAGAGAAGAATCCAACATTGGGAATTACTGGCGCCACTGCAATGATCTTGTGG 1314
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTAGAAACAGAGAAGAATCCAACATTGGGAATTACTGGCGCCACTGCAATGATCTTGTGG 1316
Query 1315 ATCAGTCGTATTCATTTGATCCTTGTGATTCAATACTGCCAGATCATTGTTGGACTAAGA 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATCAGTCGTATTCATTTGATCCTTGTGATTCAATACTGCCAGATCATTGTTGGACTAAGA 1376
Query 1375 ACATTGATCTGCTTCCAACTTCAAACATTATCGACGAAATCTTTGGTCAAGACCACCCAT 1434
|||||||||| ||||||||||||||||| || ||||| |||||||||||||||| | ||
Sbjct 1377 ACATTGATCTTCTTCCAACTTCAAACATCATTGACGAGATCTTTGGTCAAGACC-C--AT 1433
Query 1435 GGGATGATTTCTCCAGAGGGAAGTAAATGAAGAAT--T-GTCTCCCATGTCCATTGCTAC 1491
||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||
Sbjct 1434 GGGATGATTTCTCCAGAGGGAAGTAAATGAAGAATAATTGTCTCCCATCTCCATTGTTAC 1493
Query 1492 TCTGCTCCAAGTTCTGAATCTTCTGTATGTAAATGCATTATTTAAGAAAATCTCAAGTTG 1551
||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1494 TCTACTCCAAGTTCTGAATCTT--GT--GTAAATGCATTATTTAAGAAAATCTCAAGTTG 1549
Query 1552 GAAGTTTTGAGGGAGGCATGTC-GTGTATAGTTTTATGGCCGTGGAAACTTATGTGtttt 1610
||||||||||||||| | |||| ||||||||||| ||||| |||||||||| ||||||||
Sbjct 1550 GAAGTTTTGAGGGAGTCCTGTCCGTGTATAGTTT-ATGGCAGTGGAAACTT-TGTGTTTT 1607
Query 1611 tgatactttag 1621
||||| |||||
Sbjct 1608 TGATA-TTTAG 1617
Score = 100 bits (54), Expect = 3e-20
Identities = 61/64 (95%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 1641 tttagattttGTTGTAAGAAGATaaaaaaaaTTCTTCAACTGTTTAATAAACTAACTTTT 1700
|||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 1613 TTTAGATTTTGTTGTAAGAAGA-AGAAAAAAT-CTTCAACTGTTTAATAAACTAACTTTT 1670
Query 1701 GTTC 1704
||||
Sbjct 1671 GTTC 1674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63953521355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5