BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13890.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334683 jgi|Araly1|334683|fgenesh1_pg.C_scaffold_1001248 1282 0.0
> Ahg334683 jgi|Araly1|334683|fgenesh1_pg.C_scaffold_1001248
Length=795
Score = 1282 bits (694), Expect = 0.0
Identities = 763/796 (96%), Gaps = 5/796 (1%)
Strand=Plus/Plus
Query 1 ATGTTTGGGTTTTTCAAATCTCCGGGGAACAATAAACTTCCCAATGAATCATCAAACAAC 60
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1 ATGTTTGGATTTTTCAAATCTCCGGGGAACAATAAGCTTCCCAATGAATCGTCAAACAAC 60
Query 61 AAAGGAGGAACAATCACTGCAGGAAGAAGGACTTCTTCAGAACCAATCCTGATAACACCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGGAGGAACAATCACTGCAGGAAGAAGGACTTCTTCAGAACCAATCCTGATAACACCA 120
Query 121 GATTTCGACGATGACGACAAATACAAGAACGGTTTCAACGATTCTGGTGGTCTGCAGAGC 180
||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||
Sbjct 121 GATTTCGACGATGACGACAAATACAAGAACGGTTTCAGCGATTCCGGTGGTTTGCAGAGC 180
Query 181 CAAACGACAGAAGAATTAGAAAAATATGCAGTTTATAAAGCTGAAGAAACAACCAAAGGT 240
||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 181 CAAACAACAGAAGAATTAGAAAACTACGCGGTTTATAAAGCTGAAGAAACAACCAAAGGT 240
Query 241 GTTAATAATTGTCTTAAGATCGCTGAAGATATAAGATCAGATGGTGCAAGAACGCTCGAA 300
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 241 GTTAATAATTGTCTTAAGATCGCTGAAGATATAAGATCAGATGCTACAAGAACGCTCGAA 300
Query 301 ATGTTGCATCAGCAAGGTGAACAAATCAACAGGACTCATGAAATGGCTGTTGATATGGAT 360
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 301 ATGTTGCATCAGCAAGGTGAACAGATCAACAGGACTCATGTTATGGCTGTTGATATGGAT 360
Query 361 AAAGATCTCAGTCGGGGGGAGAAGCTTTTGAACAACTTAGGAGGAATGTTTTCAAAGCCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGATCTCAGTCGGGGGGAGAAGCTTTTGAACAACTTAGGAGGAATGTTTTCAAAGCCA 420
Query 421 TGGAAACCAAAGAAGACTAAAAATATCACAGGACCTATGATCACACCAGATAAACCGTCG 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGAAACCTAAGAAGACTAAAAATATCACAGGACCTATGATCACACCAGATAAACCGTCG 480
Query 481 AAGAAGAGCGAGAATCACAAGGAAGAGCGGGAGAAACTTGGTTTGGGTGCAAAAGGACGA 540
|||||||||||||||||||| ||||| || |||||||| ||||||||||| ||||| |||
Sbjct 481 AAGAAGAGCGAGAATCACAAAGAAGAACGAGAGAAACTCGGTTTGGGTGCGAAAGGTCGA 540
Query 541 TCGAGCAGTCAA-C--CAGCATTA-GATCAACCAACAAATGCGTTGCAGAAAGTTGAGCA 596
|||||||||||| | ||| |||| || ||||||||||| ||||||||||||||||||||
Sbjct 541 TCGAGCAGTCAACCATCAGGATTAGGA-CAACCAACAAACGCGTTGCAGAAAGTTGAGCA 599
Query 597 AGAGAAGGCAAAGCAAGACGATGGACTTTCAGATTTAAGTGACATATTGGGTGATCTTAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGAGAAGGCAAAGCAAGACGATGGACTTTCAGATTTAAGTGACATATTGGGTGATCTTAA 659
Query 657 GAGCATGGCCGTTGATATGGGATCTGAGATCGACAAGCAAAACAAAGCTCTTGATCATCT 716
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 GAGCATGGCCGTTGATATGGGATCTGAGATCGACAAGCAAAACAAAGCCCTTGATCATCT 719
Query 717 CGGCGACGATGTTGATGAGCTTAACTCTCGTGTTCAAGGAGCTAATCAACGGGCACGTCA 776
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 CGGAGACGATGTTGATGAGCTTAACTCTCGTGTTCAAGGAGCTAATCAACGCGCACGTCA 779
Query 777 CTTGCTTTCCAAATAA 792
||||||||| ||||||
Sbjct 780 CTTGCTTTCTAAATAA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5