BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13910.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471551 jgi|Araly1|471551|fgenesh2_kg.1__1505__AT1G13910.1 1923 0.0
> Ahg471551 jgi|Araly1|471551|fgenesh2_kg.1__1505__AT1G13910.1
Length=1332
Score = 1923 bits (1041), Expect = 0.0
Identities = 1240/1335 (93%), Gaps = 18/1335 (1%)
Strand=Plus/Plus
Query 3 GTTTTTGGTTAGTTTAGTTTCCACTGAGCTTGCTTTCTTCCATGGCGATGATAAATAATT 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTTTGGTTAGTTTAGTTTCCACTGAGCTTGCTTTCTTCCATGGCGATGATAAATAATT 60
Query 63 CTTCTTCTTCCTCACACACAATTTCACTTTCCGATTTTATAAAATTGATTCTTCTCTTCT 122
||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTTCTTTCTCCCACACCATTTCACTTTCCGATTTTATAAAATTGATTCTTCTCTTCT 120
Query 123 TCTTAAACCCATGAAGAGTTCATGA-TT--T---CT-TA-AG--C-TC-GCAGCATAATC 170
||||||||||| ||||| ||||||| || | || || || | || | |||||||||
Sbjct 121 TCTTAAACCCACGAAGAATTCATGATTTCGTAAGCTCTATAGATCATCTGAAGCATAATC 180
Query 171 GATGGCGAATTTGAGTTTGAGCTTGTATCTAATCCTCCGGATTTACGCTCTTT-TGTTGC 229
||||||||| ||||||||||||||| ||| ||| ||||||||| |||| ||| | ||||
Sbjct 181 AATGGCGAATCTGAGTTTGAGCTTGTCTCTGATCTTCCGGATTTGCGCT-TTTCTATTGC 239
Query 230 TGTTCAATGTCTCCTTCGCTAAAACACTTAAACGAGACATGAAAGCTTTGAATG-AGATA 288
|| |||||||||||||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 240 TGATCAATGTCTCCTTCGCCAAAACACTTAAACGAGACATGAAAGCTTTGAATGAAG-TA 298
Query 289 AAGAAATTGGTGGGATGGAGATTGGTATACTCTTGGGTTGGAGATGATCCTTGTGGCGAT 348
|||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 299 AAGAGATTGGTGGGATGGAGATTGGTGTACTCTTGGGTCGGTGATGATCCTTGTGGCGAT 358
Query 349 GGAGTTTTGCCTCCGTGGTCTGGAGTTACTTGCTCTAA-AGTTGGCGATTATCGTGTCGT 407
||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 359 GGAGTTTTGCCTCCGTGGTCTGGAGTTACTTGCTC-AACAGTTGGCGATTACCGTGTCGT 417
Query 408 CGTCAAGCTAGAAGTGTATTCAATGTCGATAGTTGGGAATTTCCCAAAGGCTATAACGAA 467
| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 418 CATCAAGCTAGAAGTGTATTCAATGTCGATAGTGGGGAATTTCCCAAAGGCTGTAACGAA 477
Query 468 GCTCTTAGATCTCACTGTTTTGGATATGCATAATAACAAATTAACAGGTCCTATTCCTCC 527
||||||||||||||||||||||||| | || || |||||||||||||| ||||||||| |
Sbjct 478 GCTCTTAGATCTCACTGTTTTGGATCTTCACAACAACAAATTAACAGGCCCTATTCCTTC 537
Query 528 AGAAATTGGGCGGCTTAAGCGGCTTATCACACTGAATTTGAGGTGGAACAAACTTCAACA 587
|||||||||| |||||||||| |||| ||||| |||||||||||||| ||||||||| |
Sbjct 538 AGAAATTGGGAGGCTTAAGCGTCTTAAGACACTAAATTTGAGGTGGAATAAACTTCAATA 597
Query 588 GGCACTGCCTCCTGAAATTGGTGGATTGAAGAGTCTAACTTATCTGTACCTGAGTTTTAA 647
| ||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 598 TGTACTACCTCCTGAAATTGGTGGATTGAAGAGTCTAACTAATCTGTACCTAAGCTTTAA 657
Query 648 CAATTTCAAAGGAGAAATCCCCAAAGAACTTGCAAATCTCCATGAGCTCCAGTACTTACA 707
|||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 658 CAATTTCAGAGGAGAAATCCCCAAAGAACTTGCAAATCTTCATGAGCTCCAATACTTACA 717
Query 708 TATTCAGGAGAATCATTTTACTGGGCGAATTCCAGCAGAGCTGGGAACATTACAAAAACT 767
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 718 TATTCAGGAGAATCATTTTACTGGGCGGATTCCGGCAGAGCTGGGAACATTACAAAAACT 777
Query 768 TCGCCACTTGGATGCTGGCAACAATAACTTAGTGGGGAGTATAAGCGATCTTTTTCGCAT 827
||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 778 TCGCCGCTTGGATGCTGGCAACAATAACTTAGTGGGAAGTATAAGTGATCTTTTTCGCAT 837
Query 828 TGAAGGATGCTTTCCAGCTCTTAGAAACCTGTTTTTAAACAATAATTACTTGACTGGAGG 887
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 838 AGAAGGATGCTTTCCAGCTCTTAGAAACCTGTTTTTAAACAATAATTACTTCACTGGAGG 897
Query 888 ACTCCCAAACAAGCTTGCAAATCTAACAAACCTGGAGATCTTGTACTTATCTTTCAACAA 947
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 898 ACTCCCAAACAAGCTTGCAAATCTAACAAACCTAGAGATCTTGTACTTATCTTACAACAA 957
Query 948 AATGACTGGAGCAATACCCGCTGCACTTGCCAGTATACCAAGACTAACTAACTTGCACTT 1007
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 958 ATTGACTGGAGCAATACCCGCTGCACTTGCCAATATACCAAGACTAACTAACTTGCACTT 1017
Query 1008 GGACCACAATCTATTCAATGGAAGTATACCTGAAGCCTTCTACAAGCATCCAAACCTAAA 1067
|||||| |||||||||||||||||||| |||||||| |||||||||||||| ||| ||||
Sbjct 1018 GGACCATAATCTATTCAATGGAAGTATCCCTGAAGCTTTCTACAAGCATCCCAACTTAAA 1077
Query 1068 AGATATGTACATAGAAGGGAATGCTTTCAAATCAGACGTGAAGGCGATTGGTGCACATAA 1127
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1078 AGATATGTACATAGAAGGGAATGCCTTCAAACCAGACGTGAAGGCGATTGGTGCACATCG 1137
Query 1128 GGTCCTCGAACTTTCTGACACAGACTTCCTTGTTTAGTTATGTATAGCACAACTTTGTTT 1187
|||||| ||||||||||||||||||||||||||||||||| | || | |||||| |||||
Sbjct 1138 GGTCCTTGAACTTTCTGACACAGACTTCCTTGTTTAGTTAAGCATCGTACAACTCTGTTT 1197
Query 1188 CATTTACAGATAGGAATTTGGCAGTGTTAACTGGTTATTTAAGATTCATTTTCTCTGTTA 1247
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1198 CATTTACAGATTGGAATTTGGCAGTGTTATCTGGTTATTTAAGATTCATTTTCTCTGTTA 1257
Query 1248 AAGCGAGATTGTAGTTGATGTGTTTTCTGAATGTAAAAGATTCCTTATCCATGTATGAAA 1307
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 1258 AAGCGAGATTGTAGTTGATGTGTTTTCTGAATGTTAAAGATTCCTTATCCATATGTGAAA 1317
Query 1308 ATTGAATATAAAAGG 1322
|||||||| ||||||
Sbjct 1318 ATTGAATAAAAAAGG 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5