BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13930.1
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471553 jgi|Araly1|471553|fgenesh2_kg.1__1507__AT1G13930.1 889 0.0
> Ahg471553 jgi|Araly1|471553|fgenesh2_kg.1__1507__AT1G13930.1
Length=647
Score = 889 bits (481), Expect = 0.0
Identities = 614/672 (91%), Gaps = 33/672 (5%)
Strand=Plus/Plus
Query 9 aaaacaaaacaaaaaattatattcaaga-gaaa-aagga-aaaaaTGAATTTCATCTCCG 65
||||||||||||||| |||||||| ||| ||| || | ||||||||||||||||||||
Sbjct 1 AAAACAAAACAAAAAGTTATATTC-AGACAAAAGAAAAACAAAAATGAATTTCATCTCCG 59
Query 66 ATCAGGTAAAGAAACTCTCAAGCTC-AACACCAGAGGAGCCAGACCACAACAAGCCAGTC 124
||||||||||||| ||||| ||||| || |||||||||||| ||||| |||| |||||||
Sbjct 60 ATCAGGTAAAGAACCTCTCGAGCTCGAA-ACCAGAGGAGCCGGACCAGAACATGCCAGTC 118
Query 125 GAAGGAACCGAAACAGCTACAAGACCAGCTACCAACGCCGAGCTCATGGCAAGTGCCAAG 184
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GATGGAACCGAAACAGCCACAAGACCAGCTACCAACGCCGAGCTCATGGCAAGTGCCAAG 178
Query 185 GTTGTAGCTGAAGCTGCTCAAGCCGCAGCTCGTAACGAATCAGACAAACTCGACAAGGGT 244
|||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 179 GTTGTAGCTGAAGCTGCTCAAGCCGCAGCTAGTAACGAATCAGGCAAACTTGACAAGGGC 238
Query 245 AAAGTCGCCGGAGCCTCTGCTGATATCTTAGACGCTGCCGAGAAATACGGTAAGTTCGAT 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 239 AAAGTCGCCGGAGCCTCTGCTGATATCTTAGACGCCGCCGAGAAATACGGTAAGTTCGAT 298
Query 305 GAAAAGAGTAGCACTGGTCAGTACCTCGACAAGGCTGAGAAGTATCTCAACGACTACGAG 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 GAAAAGAGTAGCACTGGTCAGTACCTCGACAAGGCCGAGAAGTATCTCAACGACTACGAG 358
Query 365 TCGTCACACTCCACCGGTGCTGGT-G-G-TCCTCCTCCTCCGACGAGTCAGGCTGAGCCA 421
|||||||| |||||||| || ||| | | ||||||||||||| ||||||||| |||||||
Sbjct 359 TCGTCACAATCCACCGGCGCCGGTAGTGGTCCTCCTCCTCCGGCGAGTCAGGATGAGCCA 418
Query 422 GCAAGTCAGCCTGAGCCGGCGGCTAAGAAAGACGATGAAGAGTCTGGTGGTGGGCTTGGA 481
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 GCAAGTCAGCCTGAGCCGGCGGCTAAGAAAGACGATGAAGAGTCTGGCGGTGGGCTTGGA 478
Query 482 GGTTATGCCAAGATGGCTCAAGGTTTCTTGAAGTGATTTGATCTTTAATTGTTGTTCATC 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 479 GGTTATGCCAAGATGGCTCAAGGTTTCTTGAAGTGATTTGATCTTTAATTGTTGTT--TC 536
Query 542 ATTTTCGTAATAATAAATTAAATAACTAGTATCGTTTGTG-ACTAGTTTATGTTGCTTCG 600
||||||||||| ||||| || ||| |||||||||||| |||||||||||||| | |
Sbjct 537 ATTTTCGTAAT--TAAAT-AACTAA---GTATCGTTTGTGGACTAGTTTATGTTG-T--G 587
Query 601 TTTATGTTTATGGGGAGTGACGAGTGAGTGTAATAACTTCTGGTGATCATGAATCTAATC 660
| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 588 -----G-----GG--AGTTACGAGTGAGTGTAATAACTTCTGGTGATCATGAATCTAATC 635
Query 661 CATCTTTGTTGT 672
||||||||||||
Sbjct 636 CATCTTTGTTGT 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25123002303
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5