BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13950.1
Length=731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471555 jgi|Araly1|471555|fgenesh2_kg.1__1509__AT1G13950.1 913 0.0
Ahg926235 jgi|Araly1|926235|scaffold_201796.1 409 2e-113
> Ahg471555 jgi|Araly1|471555|fgenesh2_kg.1__1509__AT1G13950.1
Length=661
Score = 913 bits (494), Expect = 0.0
Identities = 590/635 (93%), Gaps = 12/635 (2%)
Strand=Plus/Plus
Query 28 ATCCTCGTCGAAGCTCGCTGCTGCAACCATGTCCGACGAGGAGCATCACTTTGAGTCCAG 87
|||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1 ATCCTCGTCGAAGCTCTCTGCTGAAACCATGTCCGACGAGGAGCATCATTTTGAGTCCAG 60
Query 88 TGACGCCGGAGCGTCCAAAACCTACCCTCAACAAGCTGGAACCATCCGTAAGAATGGTTA 147
|||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 61 TGACGCCGGAGCTTCCAAAACTTACCCACAACAAGCTGGAACCATCCGTAAGAATGGTTT 120
Query 148 CATCGTCATCAAAAATCGTCCCTGCAAGGTTGTTGAGGTTTCAACCTCGAAGACTGGCAA 207
||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 121 CATCGTCATCAAAGGTCGTCCCTGCAAGGTTGTTGAGGTTTCAACGTCAAAGACTGGCAA 180
Query 208 GCATGGTCATGCTAAATGTCATTTTGTAGCTATTGATATCTTCACCAGCAAGAAACTCGA 267
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 181 GCATGGTCATGCTAAATGTCATTTTGTAGCTATAGATATCTTCACCAGCAAGAAACTTGA 240
Query 268 AGATATTGTTCCTTCTTCCCACAATTGTGATGTTCCTCATGTCAACCGTACTGATTATCA 327
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGACATTGTTCCTTCTTCCCACAATTGTGATGTTCCTCATGTCAACCGTACTGATTATCA 300
Query 328 GCTGATTGACATTTCTGAAGATGGATATGTCAGTTTGTTGACTGATAACGGTAGTACCAA 387
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 301 ACTGATTGACATTTCTGAAGATGGATATGTCAGTTTGTTGACTGACAATGGTAGCACCAA 360
Query 388 GGATGACCTTAAGCTCCCTAATGATGACACTCTGCTCCAACAGATCAAGAGTGGGTTTGA 447
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGATGACCTCAAGCTCCCTACTGATGACACTCTGCTCCAACAGATCAAGAGTGGGTTTGA 420
Query 448 TGATGGAAAAGATCTAGTGGTGAGTGTGATGTCAGCTATGGGAGAGGAACAGATCAATGC 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 TGATGGAAAAGATCTAGTGGTGAGTGTGATGTCAGCTATGGGAGAGGAACAGATAAATGC 480
Query 508 TCTTAAGGACATCGGTCCCAAGTGAGACTAACAAAGCCTCCCCTTTGTTATGA-----GA 562
||| |||||||| ||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 481 TCTCAAGGACATTGGTCCCAAGTGAGACTAACAAAGCCGCCCCTTTGTTATAACTTATGA 540
Query 563 --TTCTTCTTCTTCT-T--CTGTAGGCTTCCATTACTCATCGGAGATTATCTTGTTTTTG 617
||||||||||||| | || ||||||||| ||||| || |||||||||||||| ||||
Sbjct 541 GCTTCTTCTTCTTCTCTTTCTTTAGGCTTCCGTTACTTATTGGAGATTATCTTGTGTTTG 600
Query 618 GGTGACTCCTA-TTTTGGATATTTAAACTTTTGTT 651
||| |||| | ||||||||||| |||||||||||
Sbjct 601 GGTTACTCTTTGTTTTGGATATT-AAACTTTTGTT 634
> Ahg926235 jgi|Araly1|926235|scaffold_201796.1
Length=517
Score = 409 bits (221), Expect = 2e-113
Identities = 400/485 (82%), Gaps = 18/485 (4%)
Strand=Plus/Plus
Query 55 CATGTCCGACGAGGAGCATCACTTTGAGTCCAGTGACGCCGGAGCGTCCAAAACCTACCC 114
|||||| ||||| ||||| ||||| || ||||| ||||||||||| || || || || ||
Sbjct 20 CATGTCGGACGACGAGCACCACTTCGAATCCAGCGACGCCGGAGCTTCGAAGACTTATCC 79
Query 115 TCAACAAGCTGG-AACCATCCGT-AAGAATGGTTACATCGTCATCAA-AAATCGTCCCTG 171
||||||||| || || ||||||| ||| |||| ||||||||||||| | ||||||||
Sbjct 80 TCAACAAGCCGGTAA-CATCCGTAAAG-GTGGTCACATCGTCATCAAGGGA-CGTCCCTG 136
Query 172 CAAGGTTGTTGAGGTTTCAACCTCGAAGACTGGCAAGCATGGTCATGCTAAATGTCATTT 231
|||||| |||||||| ||||| || |||||||| ||||||||||| || |||||||||||
Sbjct 137 CAAGGTGGTTGAGGTATCAACTTCAAAGACTGGGAAGCATGGTCACGCCAAATGTCATTT 196
Query 232 TGTAGCTATTGATATCTTCACCAGC-AAGAAACTCGAAGATATTGTTCCTTCTTCCCACA 290
||| || ||||||||||||| | | ||||| || |||||||| ||||||||||||||||
Sbjct 197 TGTTGCCATTGATATCTTCA-CTTCTAAGAAGCTTGAAGATATCGTTCCTTCTTCCCACA 255
Query 291 ATTGTGATGTTCCTCATGTCAACCGTACTGATTATCAGCTGATTGACATTTCTGAAGATG 350
||||||||||||| ||||| || ||| |||||| ||| ||||||| || ||||||||||
Sbjct 256 ATTGTGATGTTCCACATGTGAATCGTGTTGATTACCAGTTGATTGATATCTCTGAAGATG 315
Query 351 GATATGTCAGT-TTGTTGACTGATAACGGTAGTACCAAGGATGACCTTAAGCTCCCTAA- 408
| | ||| ||| || || |||||||| |||||||| |||||||| || ||||| || ||
Sbjct 316 GCTTTGTTAGTCTTCTT-ACTGATAATGGTAGTACTAAGGATGATCTGAAGCTGCC-AAC 373
Query 409 TGATGACA-CTCTGCTC-CAACAGATCAAGAGTGGGTTTGATGATGGAAAAGATCTAGTG 466
|||||| | || ||||| || ||| |||||| ||| |||||||| || || ||| ||||
Sbjct 374 TGATGA-AGCTTTGCTCACA-CAGCTCAAGAATGGATTTGATGAGGGCAAGGATATAGTT 431
Query 467 GTGAGTGTGATGTCAGCTATGGGAGAGGAACAGATCAATGCTCTTAAGGACA-TCGGTCC 525
||| ||| ||||| || ||||||||||||||||| |||||| ||||| | | |||||
Sbjct 432 GTGTCTGTCATGTCTGCAATGGGAGAGGAACAGATGTGTGCTCTCAAGGA-AGTTGGTCC 490
Query 526 CAAGT 530
|||||
Sbjct 491 CAAGT 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26914779402
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5