BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13960.1
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471557 jgi|Araly1|471557|fgenesh2_kg.1__1511__AT1G13960.1 2964 0.0
Ahg916062 jgi|Araly1|916062|Al_scaffold_0008_813 1306 0.0
Ahg484242 jgi|Araly1|484242|fgenesh2_kg.5__234__AT2G03340.1 440 2e-122
> Ahg471557 jgi|Araly1|471557|fgenesh2_kg.1__1511__AT1G13960.1
Length=1886
Score = 2964 bits (1605), Expect = 0.0
Identities = 1812/1908 (95%), Gaps = 30/1908 (2%)
Strand=Plus/Plus
Query 2 TTAATTTTGGGGATCGATGTCGGAAAAGGAAGAAGCTCCGTCGACATCGAAGTCCACCGG 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 TTAATTTTGGGGATCGATGTCGGAAAAGGAAGAAGCTCCGTCGACATCGAAGTCTGCCGG 60
Query 62 AGCTCCGTCGCGTCCGACTTTATCTCTTCCTCCACGGCCGTTTAGTGAGATGTTCTTTAA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTCCGTCGCGTCCGACTTTATCTCTTCCTCCACGGCCGTTTAGTGAGATGTTCTTTAA 120
Query 122 CGGTGGCGTTGGATTCAGTCCTGGTCCGATGACTCTGGTCTCTAATATGTTCCCTGATTC 181
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CGGTGGCGTTGGATTTAGTCCTGGTCCGATGACTTTGGTCTCTAATATGTTCCCTGATTC 180
Query 182 CGATGAGTTTAGGTCTTTCTCTCAGCTTCTCGCTGGAGCCATGTCTTCTCCAGCGACTGC 241
||||||||||||||||||||||||||| || |||||||||||| ||||||| | | | |
Sbjct 181 CGATGAGTTTAGGTCTTTCTCTCAGCTCCTTGCTGGAGCCATGACTTCTCC-G-G-C-G- 235
Query 242 AgctgctgctgctgctgctgcGACGGCTAGTGATTACCAGAGACTTGGTGAAGGGACTAA 301
| |||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 236 A-------CTGCAACTGCTGCGACGGCTAGTGATTACCAGAGAATTAGTGAAGGGACTAA 288
Query 302 TAGCTCTAGTGGTGATGTTGACCCGAGATTCAAGCAAAACAGACCAACCGGTTTGATGAT 361
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 289 TAGCTCGAGTGGTGATGTTGACCCGAGATTCAAGCAGAACAGACCAACCGGTTTGATGAT 348
Query 362 TTCTCAATCTCAATCGCCGTCGATGTTCACCGTACCGCCTGGTTTAAGTCCAGCTATGTT 421
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 349 TTCTCAATCTCAATCGCCGTCGATGTTCACCGTACCGCCTGGTTTAAGCCCGGCCATGTT 408
Query 422 GCTCGATTCACCAAGCTTTTTGGGTCTTTTCTCTCCCGTTCAGGGATCATATGGAATGAC 481
| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 409 GATGGATTCACCAAGCTTTTTGGGTCTTTTCTCTCCCGTTCAGGGAGCATATGGAATGAC 468
Query 482 ACATCAGCAAGCTCTAGCTCAAGTCACTGCTCAAGCAGTTCAAGCCAATGCCAATATGCA 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TCATCAGCAAGCTCTAGCTCAAGTCACTGCTCAAGCAGTTCAAGCCAATGCCAATATGCA 528
Query 542 ACCACAAACAGAGTACCCTCCTCCCTCTCAAGTTCAATCATTTTCATCGGGTCAAGCGCA 601
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 529 ACCACAAACCGAGTACCCTCCTTCCTCTCAAGTTCAATCATTTTCATCGGGTCAAGCTCA 588
Query 602 GATCCCGACCTCGGCTCCACTACCAGCTCAAAGAGAAACCTCAGATGTAACCATCATAGA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 589 GATCCCGACCTCGGCTCCACTACCAGCTCAAAGAGAAACCTCAGATGTAACCATCATCGA 648
Query 662 GCACAGGTCACAACAGCCTCTAAATGTTGACAAACCAGCTGATGATGGCTATAACTGGCG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GCACAGGTCACAACAGCCTCTAAATGTTGACAAACCAGCTGATGATGGCTATAACTGGCG 708
Query 722 AAAATATGGGCAAAAGCAAGTTAAAGGTAGCGAGTTTCCACGAAGCTATTACAAGTGTAC 781
|||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 709 AAAATACGGGCAAAAGCAAGTTAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAGTGTAC 768
Query 782 TAATCCAGGATGTCCTGTCAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TAATCCAGGATGTCCTGTCAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGA 828
Query 842 GATTATCTACAAAGGTCAGCACAATCATGAACCTCCTCAAAACACTAAGCGAGGTAACAA 901
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 829 AATCGTCTACAAAGGTCAGCACAATCATGAACCTCCTCAAAACACTAAGCGAGGAAACAA 888
Query 902 AGATAACACCGCGAATATAAATGGGAGTTCGATAAATAACAATCGCGGGAGTTCTGAATT 961
||||| |||||| |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 889 AGATAGCACCGCAAATATAAATGGGAGTTCGGTACATAACAATCGCGGGAGTTCTGAATT 948
Query 962 GGGGGCATCACAGTTTCAAACTAATAGCTCCAACAAGACTAAGAGAGAGCAACATGAAGC 1021
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 949 GGGGGCATCACAGTTTCAAACTAATAACTCCAACAAGACTAAGAGAGAGCAACATGAAGC 1008
Query 1022 AGTAAGTCAAGCTACGACAACAGAGCACTTGTCTGAGGCAAGTGACGGTGAAGAAGTTGG 1081
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1009 AGCAAGTCAAGCTACGACAACAGAGCACTTGTCTGAGGCAAGTGACAGTGAAGAAGTTGG 1068
Query 1082 TAATGGAGAAACTGATGTGAGAGAGAAAGATGAGAATGAGCCTGATCCCAAGAGAAGAAG 1141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TAATGGAGAAACTGATGTGAGAGAGAAAGATGAGAATGAGCCTGATCCCAAGAGAAGAAT 1128
Query 1142 TACAGAAGTTCGGATTTCAGAACCAGCTCCTGCTGCTTCACATAGAACTGTGACAGAGCC 1201
||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||
Sbjct 1129 TACAGAAGTTCGGGTTTCAGAACCAGCTGCTACTGCTTCACATAGAACCGTGACAGAGCC 1188
Query 1202 TAGAATTATTGTCCAAACGACGAGTGAAGTTGATCTTCTAGATGATGGATATAGGTGGCG 1261
| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TCGAATTATTGTCCAAACAACTAGTGAAGTTGATCTTCTAGATGATGGATATAGGTGGCG 1248
Query 1262 TAAATATGGACAGAAAGTTGTCAAAGGGAATCCTTATCCGAGGAGCTACTACAAGTGCAC 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 CAAATATGGACAGAAAGTTGTCAAAGGGAATCCTTATCCGAGGAGCTACTACAAGTGCAC 1308
Query 1322 AACACCAGGATGTGGTGTGAGGAAACATGTAGAGAGAGCAGCAACAGATCCAAAAGCTGT 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 AACACCAGGATGTGGTGTGAGGAAACATGTAGAGAGAGCAGCAACAGATCCAAAAGCTGT 1368
Query 1382 AGTAACAACATATGAAGGAAAACATAACCATGACCTTCCCGCTGCTAAATCAAGCAGCCA 1441
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1369 AGTAACAACATATGAAGGAAAACATAACCATGACCTTCCAGCAGCTAAATCAAGCAGCCA 1428
Query 1442 TGCCGCTGCAGCGGCACAGTTAAGGCCAGATAATCGACCTGGCGGTTTGGCTAACTTAAA 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 TGCCGCTGCAGCGGCACAGTTAAGGCCAGATAATCGACCTGGCGGTTTGGCTAACTTAAA 1488
Query 1502 TCAACAGCAGCAGCAACAGCCCGTTGCGCGGCTAAGGCTTAAAGAAGAGCAAACAACTTG 1561
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1489 TCAACAGCAGCAGCAGCAGCCCGTTGCGCGTCTAAGGCTGAAAGAAGAGCAAACAACTTG 1548
Query 1562 AGAGAAGAAAACTCTTGACC---GTTTTT-CATTACAAAAGCTTTCAAATTCCACTCACA 1617
|||||||| |||||| |||| |||||| ||||| ||| | | |||||||||||||| |
Sbjct 1549 AGAGAAGAGAACTCT-GACCTTTGTTTTTTCATTATAAAGG-TCTCAAATTCCACTCATA 1606
Query 1618 CACTTGTCTGAAAAATCTAGCAGTTTGCAGGAAAGAAACAGCTTCA-A-G-AGGTTGTAG 1674
||||||||||| ||||||||||||||||||||||| || ||||||| | | || |||| |
Sbjct 1607 CACTTGTCTGAGAAATCTAGCAGTTTGCAGGAAAGTAAGAGCTTCAGAAGGAG-TTGTTG 1665
Query 1675 TTCTTCTATGTTCTGGTGTAAAACTTAAAA-GCTTTTTAGGGTTTTCAGATTTCTGTTTA 1733
||||||||||| || ||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct 1666 TTCTTCTATGT-CTTGTGTAAAACTTAAAAAGCTTTTTAGG-TTTACAGATTTCTGTTTA 1723
Query 1734 CTAATACTGTATGTGAATTCTTTTGTACATGAGGAAGAAAATTACAGGGGGATATTTTGT 1793
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724 CTAA-A----ATGTGAATTCTTTTGTACATGAGGAAGAAAATTACAGGGGGATATTTTGT 1778
Query 1794 GTTGTATCTTTTGTGTTATTGTTTCAGTAAAAGATAGGTCTTACATTTTGTGTATGAAAA 1853
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1779 GTTGTATCTTTTGTGTTATTGTTTCAGAAAAAGATAGGTTTTACATTTTGTGTATGAAAA 1838
Query 1854 TGAAAGTATTTGTTGTAATATCAAACTTTTTTCTTTTGTTTATTATTA 1901
||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1839 TGAAAGTATTTGTTGTAATATCAAACTGTTTTCTTTTGTTTATTATTA 1886
> Ahg916062 jgi|Araly1|916062|Al_scaffold_0008_813
Length=828
Score = 1306 bits (707), Expect = 0.0
Identities = 796/837 (95%), Gaps = 14/837 (2%)
Strand=Plus/Plus
Query 18 ATGTCGGAAAAGGAAGAAGCTCCGTCGACATCGAAGTCCACCGGAGCTCCGTCGCGTCCG 77
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGTCGGAAAAGGAAGAAGCTCCGTCGACATCGAAGTCTACCAGAGCTCCGTCGCGTCCG 60
Query 78 ACTTTATCTCTTCCTCCACGGCCGTTTAGTGAGATGTTCTTTAACGGTGGCGTTGGATTC 137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTTATCTCTTCCTCCACGGCCGTTTAGTGAGATGTTCTTTAACGGTGGCGTTGGATTT 120
Query 138 AGTCCTGGTCCGATGACTCTGGTCTCTAATATGTTCCCTGATTCCGATGAGTTTAGGTCT 197
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 AGTCCTGGTCCGATGACTCTGGTCTCTAATATGTTCTCTGATTCCGATGAGTTTAGGTCT 180
Query 198 TTCTCTCAGCTTCTCGCTGGAGCCATGTCTTCTCCAGCGACTGCAgctgctgctgctgct 257
||||||||||| || |||||||||||| ||||||| || | | | |||| |||
Sbjct 181 TTCTCTCAGCTCCTTGCTGGAGCCATGACTTCTCC--CG-C-G-A-------CTGCAGCT 228
Query 258 gctgcGACGGCTAGTGATTACCAGAGACTTGGTGAAGGGACTAATAGCTCTAGTGGTGAT 317
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 229 GCTGCGACGGCTAGTGATTACCAAAGAATTGGTGAAGGGACTAATAGCTCGAGTGGTGAT 288
Query 318 GTTGACCCGAGATTCAAGCAAAACAGACCAACCGGTTTGATGATTTCTCAATCTCAATCG 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GTTGACCCGAGATTCAAGCAAAACAGACCAACCGGTTTGATGATTTCTCAATCTCAATCG 348
Query 378 CCGTCGATGTTCACCGTACCGCCTGGTTTAAGTCCAG-CTATGTTGCTCGATTCACCAAG 436
||||||||||||||||||||||||||||||||||| | || ||||| | |||||||||||
Sbjct 349 CCGTCGATGTTCACCGTACCGCCTGGTTTAAGTCCGGCCT-TGTTGATGGATTCACCAAG 407
Query 437 CTTTTTGGGTCTTTTCTCTCCCGTTCAGGGATCATATGGAATGACACATCAGCAAGCTCT 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CTTTTTGGGTCTTTTCTCTCCCGTTCAGGGATCATATGGAATGACACATCAGCAAGCTCT 467
Query 497 AGCTCAAGTCACTGCTCAAGCAGTTCAAGCCAATGCCAATATGCAACCACAAACAGAGTA 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AGCTCAAGTCACTGCTCAAGCAGTTCAAGCCAATGCCAATATGCAACCACAAACAGAGTA 527
Query 557 CCCTCCTCCCTCTCAAGTTCAATCATTTTCATCGGGTCAAGCGCAGATCCCGACCTCGGC 616
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 528 CCCTCCTTCCTCTCAAGTTCAATCATTTTCATCGGGTCAAGCTCAGATCCCGACCTCGGC 587
Query 617 TCCACTACCAGCTCAAAGAGAAACCTCAGATGTAACCATCATAGAGCACAGGTCACAACA 676
|||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||
Sbjct 588 TCCACTACCAGCTCAAAGAGAAACCTCATATGTGACCATCATCGAGCACAGGTCCCAACA 647
Query 677 GCCTCTAAATGTTGACAAACCAGCTGATGATGGCTATAACTGGCGAAAATATGGGCAAAA 736
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 648 CCCTCTAAATGTTGACAAACCAGCTGATGATGGTTATAACTGGCAAAAATATGGGCAAAA 707
Query 737 GCAAGTTAAAGGTAGCGAGTTTCCACGAAGCTATTACAAGTGTACTAATCCAGGATGTCC 796
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 708 GCAAGTTAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAGTGTACTAATCCAGGATGTCC 767
Query 797 TGTCAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGAGATTATCTACAA 853
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 768 TGTCAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGAAATCATCTACAA 824
> Ahg484242 jgi|Araly1|484242|fgenesh2_kg.5__234__AT2G03340.1
Length=1909
Score = 440 bits (238), Expect = 2e-122
Identities = 406/483 (84%), Gaps = 27/483 (6%)
Strand=Plus/Plus
Query 972 CAGTTTCAAA-C--TAATAGC--TC-CAACAAGACTAAGAGAGAGCAACATGAAGCAGTA 1025
|||||||||| | ||||||| || |||||||| |||||| | | | || ||| | |
Sbjct 1123 CAGTTTCAAACCAGTAATAGCAGTCTCAACAAGAGTAAGAG-G-G-ACCAGGAA--A-CA 1176
Query 1026 AGTCAAGCTACGACAACAGAGCACTTGTCTGAGGCAAGTGACGGTGAAGAAGTTGGTAAT 1085
|| |||| ||| ||||||||||| ||||||| |||||||| | || || |||||||||
Sbjct 1177 AGCCAAGTTACAACAACAGAGCAGATGTCTGAAGCAAGTGATAGCGAGGAGGTTGGTAAT 1236
Query 1086 GGAGAAACTGA-TGTGAGAGAGAAAGATGAGA-ATGAGCCTGATCCCAAGAGAAGAAGTA 1143
| ||| ||| | |||| |||| ||| | | | |||||||||||||||||||||||| ||
Sbjct 1237 GCAGAGACT-ACTGTGGGAGAAAAACA-CAAAGATGAGCCTGATCCCAAGAGAAGAAATA 1294
Query 1144 CAGAAGTTCGGATTTCAGAACCAGCTCCTGCTGCTTCACATAGAACTGTGACAGAGCCTA 1203
||||||||||| |||||||||||| | |||| | || ||||||||||||||||||||||
Sbjct 1295 CAGAAGTTCGGGTTTCAGAACCAG-T--TGCTTCATCGCATAGAACTGTGACAGAGCCTA 1351
Query 1204 GAATTATTGTCCAAACGACGAGTGAAGTTGATCTTCT-AGATGATGGATATAGGTGGCGT 1262
|||||||||||||||||| |||||||||||| || || |||||||||||||||||||||
Sbjct 1352 GAATTATTGTCCAAACGAAGAGTGAAGTTGACCT-CTTAGATGATGGATATAGGTGGCGC 1410
Query 1263 AAATATGGACAGAAAGTTGTCAAAGGGAATCCTTATCCGAGGAGCTACTACAAGTGCACA 1322
|| ||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||| ||
Sbjct 1411 AAGTATGGTCAGAAAGTAGTCAAAGGAAATCCTTATCCAAGGAGCTACTATAAGTGTACG 1470
Query 1323 ACACCAGGAT-GTGGTGTGAGGAAACATGTAGAGAGAGCAGCAACA-GATCCAAAAGCTG 1380
||||| |||| | || || ||||||||||||||||||||||||| | || || |||||||
Sbjct 1471 ACACC-GGATTGCGGAGTAAGGAAACATGTAGAGAGAGCAGCAA-ATGACCCGAAAGCTG 1528
Query 1381 TAGTAACAACATATGAAGGAAAACATAACCATGACCTTCCCGCTGCTA-AATCAAGCAGC 1439
| ||||||||||||||||| ||||||||||| ||| |||| |||| || || || |||||
Sbjct 1529 TCGTAACAACATATGAAGGGAAACATAACCACGACGTTCCAGCTGGTAGAACCA-GCAGC 1587
Query 1440 CAT 1442
|||
Sbjct 1588 CAT 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72104833785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5