BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13970.1
Length=2050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471558 jgi|Araly1|471558|fgenesh2_kg.1__1512__AT1G13970.1 2998 0.0
Ahg931098 jgi|Araly1|931098|scaffold_303555.1 368 8e-101
Ahg931097 jgi|Araly1|931097|scaffold_303554.1 285 9e-76
> Ahg471558 jgi|Araly1|471558|fgenesh2_kg.1__1512__AT1G13970.1
Length=2059
Score = 2998 bits (1623), Expect = 0.0
Identities = 1914/2047 (94%), Gaps = 50/2047 (2%)
Strand=Plus/Plus
Query 37 ACAGAGAAACAAATAGAGGCAGAGAGCAGAAGAAAGACGAAACAGAGGA---TTTTCAT- 92
||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |
Sbjct 30 ACA-AGAAACAAATAGAGGCAGAGAGAAGAAGAAAGACGAAACAGAGGATTTTTTTTTTC 88
Query 93 AGAGAATCCtctttcttcctcctttcttcgcctt-ct-tc-tgttct--t--ct--tctt 143
| |||||||||||||||||||||||||||||||| || || | |||| | | | ||
Sbjct 89 AAAGAATCCTCTTTCTTCCTCCTTTCTTCGCCTTCCTCTCTTCTTCTCCTGGTTAGTTTT 148
Query 144 ctCCTGGGTCTTGAAGATACATGAA-ACAACATCTCATTGTTATGAA---TGTTGATGCA 199
|| |||||||||||||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 149 CTTCTGGGTCTTGAAGATACATGAATA-AACATCTCATTGTTATGAATGTTGTTGATGCA 207
Query 200 TTCTTTTATGTAAACTTAACTTTTTACAGGTGACCTCTCTGAAAGATTGTAAGGTTCCTT 259
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 208 TTCTTTTATGTAAACTTAACTTCTTACAGGTGACCTCTCTGAAAGATTATAAGG-T-AAA 265
Query 260 ACA-AAAAT-TTGATTTCGT-TTGGTGA-ATGAA-AT-AGTTAGAAATTCTCCAAAACAA 313
| | ||| || |||| | || | | | || || | ||||||||||| ||||| ||
Sbjct 266 AGATTCAATCTTTTTTTC-TATT-TTCAGA-CAAGATCA-TTAGAAATTCT-CAAAA-AA 319
Query 314 -AATATGGGTGGCTGTGTTTCTTCTCAGAGAAAACTCAGTAACAAGCTTCAACAGAAGAA 372
|| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 320 GAAAATGGGTGGCTGCGTTTCTTCCCAGAGAAAACTGAGCAACAAGCTTCAACAGAAGAA 379
Query 373 GCAGAAACGCGGCAGATCTGGCAAATGTCGGTCCAAAATATCGGCTTCTATGCCCGATGT 432
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 380 GCAGAAACGCGGCAGATCTGGCAAATGCCGGTCCAAAATCTCGGCTTCTATGCCCGATGT 439
Query 433 TCCTATGAAACGCATGAGTAATGCGAGTGTTAGGGATTTTGCGGTGAGCGAATATGTTCA 492
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 440 TCCTATGAAACGCATGAGTAACGCGAGTGTCAGGGATTTTGCGGTGAGCGAATATGTTCA 499
Query 493 TCTTGATTTCGACAATTGTGCAGCCAAGATGATGTGTAAGAGAGCT---GAGATGTCTAA 549
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 500 TCTTGATTTCGACAATTGCGCAGCCAAGATGATGTGTAAGAGAGCTGCAGAGATGTCTAA 559
Query 550 TGCTAACTTCCATTTAACTCAGCTTCAATGGAACTGCAGCCAAATCGATGGAAACCGAAT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TGCTAACTTCCATTTAACTCAGCTTCAATGGAACTGCAGCCAAATCGATGGAAACCGAAT 619
Query 610 TTCACATGAGGAGGCTTGGTATGATTCCTTTAGCTACATCGATTCTGATTCTGATGATGG 669
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 620 TTCACATGAGGAGGCTTGGTATGATTCTTTTAGCTACATCGATTCTGATTCTGATGATGG 679
Query 670 TTCAAATAGTAGTGTCTTCGAAGATGCAAATGCTTCTGCAATGGGACAAGTGATTCAGTA 729
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 680 TTCAAATAGTAGTGTCTTTGAAGATGCAAATGCTTCTGCAATGGGACAAGTGATTCAGTA 739
Query 730 TGAAGAATTCTACGAAAGTTACCTGAAAATAGATGGAAACAAAGGTGAGACTTACTCGAG 789
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 740 TGAAGAATTCTACGAAAGTTACCTGAAAATAGATGGAAACAAAGGTGAGACATACTCAAG 799
Query 790 CAAGAATGAGGTTAGTATAAAGAGAAACCAAGTGGCTGATGAATCTCACCATGAAACCTT 849
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 800 CAAGAATGAAGTTAGCATAAAGAGAAACCAAGTGGCTGATGAATCTCATCATGAAACCTT 859
Query 850 CAAGACTACTACTTGTGAAGATCATCAAGATCACAGAAAGAAATCATCAAAAGTTGTTAT 909
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 860 CAAGACTACTACTTGTGAAGATCATCAAGATCACAGGAAGAAATCATCAAAAGTTGTTAT 919
Query 910 GGTTTCTGTGAGAAGAACATCTATTGATAGCAAATCAACACCATCTGAATTCTCTTCAGC 969
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 920 GGTTTCTGTGCGAAGAACATCTATTGATAGCAAATCAACAGCATCTGAATTCTCTTCAGC 979
Query 970 TGAGAAGCTCTTGTACCGTCCAAAAGCCGGTTCTATGATTCAACGTTCTTTAGGAGAGAA 1029
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 980 TGAGAAGCTCTTGTATCGTCCAAAAGCCGGTTCTGTGATTCAACGTTCTTTGGGAGAGAA 1039
Query 1030 GATGACCAGTCAAGGAAGTTGGTCAGAAGTTTCTCCGTCGAGTTTCAAGCTCCGTGGATT 1089
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1040 GCTGACCAGTCAAGGAAGCTGGTCAGAAGTTTCTCCGTCGAGTTTCAAGCTCCGTGGACT 1099
Query 1090 GAATTTCTTCAGAGACAAGCAAAAGTGTCCTGCACCAAATTGTAGTCCTTACATACCAAT 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 GAATTTCTTCAGAGACAAGCAAAAGTGTCCTGCACCAAATTGTAGTCCTTACATACCAAT 1159
Query 1150 TGGAGTCGACCTTTTTGCATGTCCTAAAAAGATCAACCACATTGCTCAACACATTGAGCT 1209
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TGGAGTCGATCTTTTCGCATGTCCTAAAAAGATCAACCACATTGCTCAACACATTGAGCT 1219
Query 1210 TCCTAATTTGAAACCGGCATCATCACAAGTCTGCGATATCCCCAATCTTTTGATAGTGAA 1269
||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1220 TCCTAATCCGAAACCGGCGTCATCACAAGTCTGCGACATCCCCAATCTCTTGATTGTGAA 1279
Query 1270 CATCCAGCTTCCAATGTATCCAACCTCTATGTTTGGTGACTATGATGGTGAAGGACTTAG 1329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1280 CATCCAGCTTCCAATGTATCCAACCTCTATGTTTGGTGACTATGATGGTGAAGGACATAG 1339
Query 1330 CTTAGTATTGTACTTCAAACGCAATGAGAACTATCACAAAGAAATCTCATCTCACTTTAA 1389
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1340 CTTAGTCTTGTACTTCAAACGCAATGAGAATTATCACAAAGAAATCTCATCTCACTTTAA 1399
Query 1390 AGAAACCATCAAGAGATTCATGGAAGATGAAATGGAGAAAGTAAAAGGATTCACAAGAGA 1449
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1400 AGAAACCATCAAGAGATTTATGGATGATGAAATGGAGAAAGTCAAAGGATTCACAAGAGA 1459
Query 1450 ATCAACAGTTCCATTCAGAGAGAGGTTAAAGATCATGGCAGGTTTGGTAAATCCTGAGGA 1509
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1460 ATCAACAGTTCCATTCAGAGAGAGGTTAAAGATCATGGCAGGTTTGGTCAATCCTGAGGA 1519
Query 1510 T-TTCCAGCTAAGTTCTACTGAGAGAAAACTTATCACAGCTTACAACGATAGACCGGTTC 1568
| ||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1520 TCTTC-AGCTAAGTTCTACTGAGAGAAAACTCATCACAGCTTACAATGATAGACCGGTTC 1578
Query 1569 TTTCTCGTCCGCAACACGATTTCTTTCAGGGACCAAACTACTTTGAGATAGATTTGGATA 1628
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1579 TTTCTCGTCCGCAACACGATTTCTTTCAGGGACCAAACTACTTTGAGATCGATTTGGATA 1638
Query 1629 TACACAGATTCAGTTACATTTCGAGGAAAGGACTCGAATCTTTCAGGGATCGTATCAAGA 1688
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 TACACAGATTCAGTTACATATCGAGGAAAGGACTCGAATCTTTCAGGGATCGTATCAAGA 1698
Query 1689 ACGGGATTCTTGATTTGGGATTAACAATTCAGGCTCAATCACCAGAGGAACTTCCAGAGC 1748
| |||||||||||| |||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 1699 ATGGGATTCTTGATCTGGGTTTAACTATTCAGGCTCAATCACCAGAGGAACTGCCAGAGC 1758
Query 1749 AAGTACTGTGTTGTGTCAGGCTGAACAAGATTGATTTCGTGAATCACGGACAAATTCCAA 1808
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1759 AAGTACTGTGTTGTGTCAGGCTGAACAAGATTGATTTCGTGAATCACGGACAGATTCCAA 1818
Query 1809 CGCTTTTAACTAACAAACAATGAAGTGATCAC--TACATAATAACACAGAGAGAGAGACA 1866
||||||||||||||||||||||| | ||| | |||| ||||||||||||||||| ||
Sbjct 1819 CGCTTTTAACTAACAAACAATGATGAGATTTCGGTACAAAATAACACAGAGAGAGA--CA 1876
Query 1867 AAGATCAATCAATCAATCAATGGGGAGAGCaaaaaaa--gacaaaaagcaaaaaCAGAGA 1924
|||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1877 AAGATCAATCAATCAATCAATGAGGAGAGCAAAAAAAAAGATAAAAAGCAAAAACAGAGA 1936
Query 1925 ACGTTTTCACATATTT-GTATTGTTGAGAGACAAAAGAAGAAGATAAAATTCAATTGTCT 1983
|||||||||||||||| |||||| |||||||||||||||||||||||| |||| ||||
Sbjct 1937 ACGTTTTCACATATTTTGTATTGC--AGAGACAAAAGAAGAAGATAAAAT-CAAT-GTCT 1992
Query 1984 TTTTTGGAAACAAGATTTGCTCGGGAATTTATTAATCTCATGAAAAAGATTCATTTGTAC 2043
| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1993 TATTTGGAAACATGATTTGCTCCGGAATTTATTAATCTCATGAAAAAGATTCATTTGTAC 2052
Query 2044 AAATGTC 2050
|||||||
Sbjct 2053 AAATGTC 2059
> Ahg931098 jgi|Araly1|931098|scaffold_303555.1
Length=368
Score = 368 bits (199), Expect = 8e-101
Identities = 285/322 (89%), Gaps = 23/322 (7%)
Strand=Plus/Plus
Query 1401 AGAGATTCATGGAAGATGAAATGGAGAAAGTAAAAGGATTCACAAGAGAATCAACAGTTC 1460
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 13 AGAGATTTATGGATGATGAAATGGAGAAAGTCAAAGGATTCACAAGAGAATCAACAGTTC 72
Query 1461 CATTCAGAGAGAGGTTAAAGATCATGGCAGGTTTGGTAAATCCTGAGGAT-TTCCAGCTA 1519
| |||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||
Sbjct 73 CGTTCAGAGAGAGGTTAAAGATTATGGCAGGTTTGGTAAATCCTGAGGATCTT-CAGCTA 131
Query 1520 AGTTCTACTGAGAGAAAACTTATCACAGCTTACAACGATAGACCGGTTCTTTCTCGTCCG 1579
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 132 AGTTCTACTGAGAGAAAACTAATCACAGCTTACAACGATAGACCGGTTCTTTCTCGTCCG 191
Query 1580 CAACACGATTTCTTTCAGGGACCAAACTACTTTGAGATAGATTTGGATATACACAGATTC 1639
|||| | | || || | | ||||| |||||||||||||||||||||
Sbjct 192 CAAC--G----C---CA---AC-A--C------GAGATCGATTTGGATATACACAGATTC 230
Query 1640 AGTTACATTTCGAGGAAAGGACTCGAATCTTTCAGGGATCGTATCAAGAACGGGATTCTT 1699
|||||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct 231 AGTTACATATCGAGGAGAGGACTGGAATCTTTCAGGGATCGTATCAAGAATGGGATTCTT 290
Query 1700 GATTTGGGATTAACAATTCAGG 1721
||| |||| ||||| |||||||
Sbjct 291 GATCTGGGTTTAACTATTCAGG 312
> Ahg931097 jgi|Araly1|931097|scaffold_303554.1
Length=202
Score = 285 bits (154), Expect = 9e-76
Identities = 173/182 (95%), Gaps = 1/182 (1%)
Strand=Plus/Plus
Query 1174 TAAAAAGATCAACCACATTGCTCAACACATTGAGCTTCCTAATTTGAAACCGGCATCATC 1233
||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 22 TAAAATGATCAACCACATTGCTCAACACATTGAGCTTCCTAATCCGAAACCGGCGTCATC 81
Query 1234 ACAAGTCTGCGATATCCCCAATCTTTTGATAGTGAACATCCAGCTTCCAATGTATCCAAC 1293
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 82 ACAAGTCTGCGATATCCCCAATCTCTTGATTGTGAATATCCAGCTTCCAATGTATCCAAC 141
Query 1294 CTCTATGTTTGGTGACTATGATGGTGAAGGACTTAGCTTAGTATTGTACTTCAAACGCAA 1353
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 142 CTCTATGTT-GGTGACTATGATGGTGAAGGACTTAGCTTAGTCTTGTACTTCAAACGCAA 200
Query 1354 TG 1355
||
Sbjct 201 TG 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77094655880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5