BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14000.1
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471561 jgi|Araly1|471561|fgenesh2_kg.1__1515__AT1G14000.1 2490 0.0
> Ahg471561 jgi|Araly1|471561|fgenesh2_kg.1__1515__AT1G14000.1
Length=1758
Score = 2490 bits (1348), Expect = 0.0
Identities = 1508/1581 (95%), Gaps = 27/1581 (2%)
Strand=Plus/Plus
Query 229 TCATCTGAATCGGTTTTGAGATGAGCTCCGATTCACCGGCGGCTGGAGACGGTGGCGAAC 288
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 199 TCATCTGAATCGG-TTTGAGATGAGCTCCGATTCACCGGCGTCTGGAGACGGTGGCGAAC 257
Query 289 AAGCCGCTGCGGGAACAAGCGTGCCTTCACCTTCATACGACAAACAAAAGGAGAAGGCAC 348
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 258 AAGCCGCTGCAGGAACAAGCGTGCCTTCACCGTCTTACGACAAACAAAAGGAGAAGGCAC 317
Query 349 GTGTGAGTAGAACATCTCTGATACTATGGCACGCGCACCAAAACGACGCAGCTGCAGTTC 408
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 318 GTGTGAGTAGAACATCTCTGATTCTATGGCACGCGCACCAAAACGACGCAGCTGCAGTTC 377
Query 409 GGAAACTCTTGGAGGAAGATCCGACTTTGGTTCACGCTAGAGACTATGACAAACGAACGC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GGAAACTCTTGGAGGAAGATCCGACTTTGGTTCACGCTAGAGACTATGACAAACGAACGC 437
Query 469 CTCTCCACGTGGCGTCGCTTCATGGATGGATCGATGTTGTTAAATGTCTGCTTGAGTTTG 528
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CTCTTCACGTTGCGTCGCTTCATGGATGGATCGATGTTGTTAAATGTCTGCTTGAGTTTG 497
Query 529 GTGCTGATGTCAATGCTCAGGATAGGTGGAAGAACACGCCACTGGCTGATGCAGAAGGAG 588
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 498 GTGCTGATGTCAACGCTCAGGATAGGTGGAAGAACACGCCTCTGGCTGATGCAGAAGGAG 557
Query 589 CTAGGAAGCAGAAAATGATTGAACTGCTGAAATCTCATGGTGGTTTGTCTTATGGTCAAA 648
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 558 CTAGGAAGCAGAAAATGATTGAATTGCTGAAATCTCATGGTGGTTTATCTTATGGTCAAA 617
Query 649 ACGGAAGTCACTTTGAACCAAAGCCTGTGCCACCACCAATTCCAAAGAAATGTGACTGGG 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 ACGGAAGTCACTTTGAACCAAAGCCTGTGCCACCACCAATTCCAAAGAAATGTGACTGGG 677
Query 709 AAATTGAACCTGCTGAGCTGGATTTTTCAAATGCTGCAATGATTGGAAAGGGTTCATTTG 768
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 678 AAATTGAACCTGCTGAGCTGGATTTTTCAAATGCCGCTATGATTGGAAAGGGTTCATTTG 737
Query 769 GTGAGATTGTGAAAGCCTATTGGAGAGGAACACCGGTAGCTGTGAAACGTATTCTTCCTT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GTGAGATTGTGAAAGCCTATTGGAGAGGAACACCGGTAGCTGTGAAACGTATTCTTCCTT 797
Query 829 CTCTTTCAGATGATAGACTGGTTATTCAGGACTTCAGGCATGAGGTTGATTTGCTAGTTA 888
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 798 CTCTTTCAGATGATAGACTGGTTATTCAGGACTTCAGGCACGAGGTTGATTTGTTAGTTA 857
Query 889 AGCTTCGCCATCCAAATATAGTCCAATTCTTAGGAGCGGTAACCGAAAGAAAGCCCCTTA 948
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 858 AGCTTCGCCATCCGAATATAGTGCAATTCTTAGGAGCGGTAACCGAAAGAAAGCCCCTTA 917
Query 949 TGTTAATCACTGAGTACTTACGCGGGGGAGATCTTCATCAATACCTCAAGGAGAAGGGCG 1008
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TGTTAATCACAGAATACTTGCGCGGGGGAGATCTTCATCAATACCTCAAGGAGAAGGGCG 977
Query 1009 GTCTTACTCCAACAACTGCTGTCAACTTTGCTTTGGATATCGCGAGAGGAATGACATATC 1068
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 978 GTCTTACTCCAGCAACTGCTGTCAACTTTGCGTTGGATATCGCGAGAGGAATGACATATC 1037
Query 1069 TTCACAATGAACCTAATGTTATCATTCACCGAGATCTTAAACCAAGGAACGTTCTTCTGG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TTCACAATGAACCTAATGTTATCATTCACCGAGATCTTAAACCAAGGAACGTTCTTCTGG 1097
Query 1129 TTAATTCTAGTGCAGACCACTTGAAAGTTGGAGACTTTGGACTTAGTAAGCTCATAAAAG 1188
||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 1098 TTAATTCCAGTGCAGACCACTTAAAAGTTGGTGACTTTGGACTTAGTAAGCTCATAAAGG 1157
Query 1189 TTCAAAACTCTCATGATGTCTACAAAATGACTGGAGAAACAGGAAGCTATCGTTATATGG 1248
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1158 TTCAAAACTCTCATGATGTCTACAAAATGACTGGAGAAACCGGAAGCTATCGTTACATGG 1217
Query 1249 CTCCTGAAGTATTCAAGCATAGAAGATATGACAAGAAAGTCGATGTCTTCTCCTTTGCAA 1308
||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1218 CTCCTGAAGTATTCAGGCATAGAAGATACGATAAGAAAGTCGATGTCTTCTCCTTTGCAA 1277
Query 1309 TGATACTTTACGAGATGCTTGAAGGAGAGCCACCATTTGCGAACCATGAGCCATATGAAG 1368
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1278 TGATACTTTACGAGATGCTTGAAGGAGAGCCACCGTTTGCGAACCATGAGCCGTATGAAG 1337
Query 1369 CAGCCAAACATGTATCTGATGGACATAGACCTACATTCCGTTCCAAAGGATGCACACCAG 1428
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1338 CAGCCAAACATGTATCTGATGGACACAGACCTACATTCCGTTCCAAAGGATGCACACCAG 1397
Query 1429 ATCTAAGAGAGTTAATTGTGAAATGCTGGGACGCAGACATGAACCAGAGACCGTCGTTTC 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 ATCTAAGAGAGTTAATTGTGAAATGCTGGGACGCAGACATGAACCAGAGACCGTCGTTTC 1457
Query 1489 TGGACATTCTCAAGAGACTTGAAAAGATCAAGGAAACTCTACCATCAGATCACCATTGGG 1548
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 TGGACATCCTCAAGAGACTTGAAAAGATCAAGGAAACTCTACCATCAGATCACCATTGGG 1517
Query 1549 GCTTATTCACTTCATAATACACAAAATCCATTATTTAAGCACAAAAACAACCAGAAACAA 1608
|||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||
Sbjct 1518 GCTTATTCACTTCATAATACACCAAATC-ATTATTTAAGAACAAAAACAACCAGACACAC 1576
Query 1609 GAAAGTATCATTCTCTGTTTGCCTTATTA--AT-CTCTGtttcatt-tcttttgtaaaga 1664
||||| | || | |||||||||||||||| || ||||||||| || |||||||||||||
Sbjct 1577 GAAAGCAACAAT-TCTGTTTGCCTTATTATTATTCTCTGTTTC-TTGTCTTTTGTAAAGA 1634
Query 1665 ttgtttcttttt--catcttttcatttgctttAAAAGAGTGTGAGATAGAAAGCTTTTAT 1722
|||||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 1635 TTGTTTCTTTTTTTCATCTTTTCATTTGCTTTAAAAGAGTGTGAGATA-AAA------A- 1686
Query 1723 TGTTGTTACATGGATTGGATTGAGTTTGCAGGTTAATGAGAAGTTCATATCATATCAGAC 1782
| ||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 1687 -------A--TGGATTGGATTGAGTTTGCAGGTTAATGAGATGTTAAGATCATATCAGAC 1737
Query 1783 AGGATAAAATGTCTGTTTCCG 1803
|||||||| ||||||||||||
Sbjct 1738 AGGATAAAGTGTCTGTTTCCG 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67762545855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5