BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14010.1
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920285 jgi|Araly1|920285|scaffold_101566.1 1062 0.0
Ahg471561 jgi|Araly1|471561|fgenesh2_kg.1__1515__AT1G14000.1 111 7e-24
> Ahg920285 jgi|Araly1|920285|scaffold_101566.1
Length=680
Score = 1062 bits (575), Expect = 0.0
Identities = 645/680 (95%), Gaps = 0/680 (0%)
Strand=Plus/Plus
Query 40 TCTCTCTATATCGGAGCCGTCATGAATCATCGTCGGAGCTCGATCGTACTATTGATCCTC 99
|||||||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTATACCGGAGCCGCCATGGATCTTCGTCGGAGCTCGATCGTACTATTGATCCTC 60
Query 100 TCAATTTTATCTCCCGTGACACTCTCTATACGATACGAGCTACTTTCTGGGCACACGAAA 159
|||||||||| ||| ||||| |||||||||||||||||| || |||||||||||||||||
Sbjct 61 TCAATTTTATTTCCAGTGACGCTCTCTATACGATACGAGATATTTTCTGGGCACACGAAA 120
Query 160 TGCATCTCAGAGGAGATTCACGCAAACGCAATGACCATCGGAAAATACAGCATTATAAAC 219
|||||||| |||||||||||||||||||||||| || |||| ||||||||||| ||||||
Sbjct 121 TGCATCTCCGAGGAGATTCACGCAAACGCAATGTCCGTCGGGAAATACAGCATCATAAAC 180
Query 220 CCTCACGAGGATCATCCTCTTCCTTCTTCCCATAAAGTCACCGTCAGGGTCACATCGCCA 279
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTAACGAAGATCATCCTCTTCCTTCTTCCCATAAAGTCACCGTCAGGGTCACATCGCCG 240
Query 280 CAAGGGACGGCTTATCACGAATCGGACGGAGTAGAATCGGGACAATTCTCGTTTGTAGCT 339
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 CAAGGAACGGCTTATCACGAATCGGACGGAGTAGAATCGGGACAATTCTCGTTTACAGCT 300
Query 340 GTGGAAACAGGGGATTACATAAGTTGCTTCTCCGCCGTCGATCACAAACCAGAGACGACG 399
||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 301 GTGGAAACAGGGGATTACATATCTTGCTTCTCAGCCGTCGATCACAAACCTGAGACGACG 360
Query 400 CTGATCATTGACTTTGATTGGAGGACGGGTATTCATACCAAGGATTGGTCGAATGTGGCA 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTGATCATTGACTTTGATTGGAGGACGGGTATTCATACCAAGGATTGGTCGAATGTGGCC 420
Query 460 AAGAAGAGCCAAGTCGAAACGATGGAGTTTGAGGTTAAGAAGTTATTTGAAACCGTGAAT 519
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGAAGAGCCAAGTTGAAACGATGGAGTTTGAGGTTAAGAAGTTATTTGAAACCGTGAAT 480
Query 520 GGAATCCACGATGAGATGTTCTATCTCCGCGACAGGGAAGAAGAAATGCACAATCTGAAC 579
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 TCCATCCACGACGAGATGTTCTATCTCCGCGACAGGGAAGAAGAAATGCACAATTTGAAC 540
Query 580 ATAGCGACAAATTCGAAGATGGCATGGTTGAGTTTCGTGTCGCTTGCAGTTTGTTTATCG 639
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATAGCGACAAATTCGAAAATGGCATGGTTGAGTTTCGTGTCGCTTGCAGTTTGTTTATCG 600
Query 640 GTCGCAGGTCTTCAGTTTTGGCACTTGAAGACTTTCTTCCAGAAAAAGAAGCTTATCTGA 699
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 601 GTCGCAGGTCTTCAGTTTTGGCACTTGAAGACTTTCTTCCAGAAGAAGAAGCTCATCTGA 660
Query 700 AAACCATTACCATCTCCTGA 719
|||||||||||||||| |||
Sbjct 661 AAACCATTACCATCTCTTGA 680
> Ahg471561 jgi|Araly1|471561|fgenesh2_kg.1__1515__AT1G14000.1
Length=1758
Score = 111 bits (60), Expect = 7e-24
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 803 CGGAAACAGACATTTTATCCTGTCTGATATGATATGAACTTCTCATTAACCTGCAAACTC 862
|||||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1758 CGGAAACAGACACTTTATCCTGTCTGATATGATCTTAACATCTCATTAACCTGCAAACTC 1699
Query 863 AATCCAATCCAT 874
||||||||||||
Sbjct 1698 AATCCAATCCAT 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33929396130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5