BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14020.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471563 jgi|Araly1|471563|fgenesh2_kg.1__1517__AT1G14020.1 3000 0.0
Ahg896294 jgi|Araly1|896294|Al_scaffold_0005_260 905 0.0
Ahg471564 jgi|Araly1|471564|fgenesh2_kg.1__1518__AT1G14030.1 84.2 3e-15
> Ahg471563 jgi|Araly1|471563|fgenesh2_kg.1__1517__AT1G14020.1
Length=1898
Score = 3000 bits (1624), Expect = 0.0
Identities = 1814/1905 (95%), Gaps = 15/1905 (1%)
Strand=Plus/Plus
Query 78 AAGGAGAGAAGAAGCATTTCATTTCGCGTTTGTCATCTAATTTCAATTTCTGACATCTCA 137
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGGAGAGAAGAAGCATTCCATTTCGCGTTTGTCATCTAATTTCAATTTCTGACATCTCA 60
Query 138 CAAGATCGGAGAAATTTAGGTTATAGT-AA--TTTTATTCTCATGAAGCGGCGACGACGA 194
|||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||
Sbjct 61 CAAGATCGGAGAAATTTAGGTTTTAGTAAATTTTTTAATCTCATGAAGCGGCGACGACGA 120
Query 195 TCGTCGGAGGAGGGAGATGGAAGTTAGATCGGAGAGTAATATTACTCAGGCGCGAAGCG- 253
|||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 121 TCGTCGGAGGAGGGAGATGGAAGTTAAATCGGAGAGTGATAATACTCAGGCGCGAAGCGA 180
Query 254 --ATAAGCTTCCGCTTCCGCCGGCAGTTCCGAAGCCTCGTGTACAAGTATGGTTCGTTAG 311
|||||||||||| |||| |||| |||| |||||||||||| |||||||||||||||||
Sbjct 181 TAATAAGCTTCCGCCTCCGTCGGCTGTTCTGAAGCCTCGTGTTCAAGTATGGTTCGTTAG 240
Query 312 AGTTTGCTCCAGCATTTTGGTTTGGACGTGTTTGGTTCAGCTTTTCGCCGCCGGTGAGCT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTTTGCTCCAGCATTTTGGTTTGGACGTGTTTGGTTCAGCTTTTCGCCGCCGGTGAGCT 300
Query 372 TTGGCATTCCCGGATCTTCACTGGTTTAACCAATCAGATTTCTAGATTCTCAGCCCCTGT 431
||||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 301 TTGGCGTTCCCGGATCTTCACTGGTTTTACCAATCAGATTTCCAGATTCTCTGCCCCTGT 360
Query 432 TGAGCCAGTTCCATTGCCACCTCCTCTACCTCCTCCGAGGAATTATACAAGCAATGGTAT 491
||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||
Sbjct 361 CGAGCCAGTTCCTTTGCCGCCTCATCTACCTCCTCCGAGAAATTATACAAGCAATGGTAT 420
Query 492 TCTACTTGTATCCTGTAATGGTGGATTGAATCAAATGCGATCCGCGATATGTGATATGGT 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTACTTGTATCCTGTAATGGTGGATTGAATCAAATGCGATCCGCGATATGTGATATGGT 480
Query 552 GACTGTTGCTCGGTTATTGAATCTCACTCTCGTTGTTCCAGAGCTTGACAAAACATCTTT 611
|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 GACTATTGCTCGGTTACTAAATCTCACTCTCGTTGTTCCAGAGCTTGACAAAACATCATT 540
Query 612 CTGGGCTGATCCTAGTGGTTTTGAGGATATTTTTGATGTGAGACATTTCATTGATTCATT 671
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 CTGGGCTGATCCTAGTGGTTTTGAGGATATTTTTGATGTGACACATTTCATTGATTCATT 600
Query 672 AAGAGATGAAGTTCGGATCTTAAGGAGGCTTCCTAAACGGTTTAGTAGAAAGTATGGATA 731
||||||||||||||||| ||||||| ||||| |||||||||| || |||||||||||
Sbjct 601 GAGAGATGAAGTTCGGATTTTAAGGAAACTTCCAAAACGGTTTACAAGGAAGTATGGATA 660
Query 732 TCAAATGTTCGAAATGCCTCCTGTGAGCTGGTCTGATGAAAAATATTACTTGAAGCAGGT 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 TCAAATGTTCGAAATGCCTCCTGTGAGCTGGTCTGATGAAAAATATTACTTGAAGCAGAT 720
Query 792 ATTGCCTCTCTTCAGCAAGCATAAAGTTGTACACTTCAATAGGACTGATACCCGCCTGGC 851
||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 ATTGCCTCTTTTCAGCAAACATAAAGTTATACACTTCAATAGGACTGATACCCGCCTGGC 780
Query 852 AAACAATGGTCTTCCGCTCTCTCTCCAGTGGCTCAGGTGCCGGGTGAATTTTCAGGGACT 911
||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 781 AAACAATGGTCTTCCGCTCGCACTCCAGTGGCTCAGGTGCCGGGTGAACTTTCAGGGACT 840
Query 912 AAAGTTCACTCCACAGCTTGAGGCTTTGGGATCTAAGTTAGTTCGGATTCTACAACAAAG 971
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 AAAGTTCACTCCACAGCTTGAGGCTTTGGGAGCTAAGTTAGTTCGGATTCTACAACAAAG 900
Query 972 AGGGCCATTTGTGGCTTTGCATCTGAGATATGAGATGGACATGTTAGCTTTCTCTGGCTG 1031
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGGGCCATTTGTGGTTTTGCATCTGAGATATGAGATGGACATGTTAGCTTTCTCTGGCTG 960
Query 1032 CACTCATGGTTGCACTGAGGAAGAAGCGGAAGAGCTAAAAAAGATGAGGTACACATATCC 1091
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 961 CACTCATGGTTGCACTGAGGAAGAAGCTGAAGAGCTAAAAAAGATGAGGTACACATATCC 1020
Query 1092 CTGGTGGAGAGAGAAGGAGATAGTCTCAGAGGAGAGGAGGGCGCAAGGGCTGTGTCCTTT 1151
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1021 CTGGTGGAGAGAGAAGGAGATAGTCTCAGAGGAGAGGAGAGCGCAAGGGCTGTGTCCTTT 1080
Query 1152 GACGCCAGAGGAGGTGGCCTTGGTATTAAAAGCGTTGGGATTTGAGAAAAATACACAGAT 1211
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1081 GACGCCAGAGGAGGTGGCCTTGGTTTTAAAAGCATTGGGATTCGAGAAAAATACACAGAT 1140
Query 1212 ATACATTGCAGCTGGTGAGATTTATGGGAGCGAGCATAGACTATCCGTGTTAAGGGAAGC 1271
|||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||||
Sbjct 1141 ATACATTGCAGCTGGTGAGATTTATGGGGGCGAGCATAGACTATCAGTTTTAAGGAAAGC 1200
Query 1272 ATTCCCGAGAATTGTAAAGAAGGAAATGCTATTGGAGTCAGCAGAGCTGCAACAGTTTCA 1331
|||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 1201 ATTCCCGAGAATTGTAAAGAAGGAAATGCTATTGGAGTCAACGGAGCTACAACAGTTTCA 1260
Query 1332 GAACCATTCGTCTCAAATGGCTGCTCTAGATTTCATGGTATCTGTGGCCAGCAACACTTT 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1261 GAACCATTCGTCTCAAATGGCTGCTCTAGATTTCATGGTATCTGTGGCCAGCAACACATT 1320
Query 1392 TATTCCTACGTATGATGGAAACATGGCAAAAGTCGTGGAAGGTCATCGTAGATACCTTGG 1451
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1321 TATTCCTACGTATGATGGAAACATGGCAAAAGTCGTGGAAGGTCATCGGAGATACCTTGG 1380
Query 1452 ATATAAGAAGACAATCCTGCTTGACCGTAAGAGACTCGTGGAGCTACTAGACTTACATCA 1511
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GTATAAGAAGACAATCCTGCTTGACCGTAAGAGACTCGTGGAGCTACTAGACTTACATCA 1440
Query 1512 CAACAAGACCCTCACGTGGGATCAGTTTGCAGTAGCAGTCAAGGAAGCCCATGAGAGACG 1571
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1441 CAACAAGACCCTCACGTGGGATCAGTTTGCAGTAGCCGTCAAGGAAGCCCATGAGAGACG 1500
Query 1572 AGCAGGAGCACCTACTCATCGAAGAGTAATCTCTGACAAACCTAAGGAGGAAGATTACTT 1631
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AGCAGGAGCACCTACACATCGAAGAGTAATCTCTGACAAACCTAAGGAGGAAGATTACTT 1560
Query 1632 CTACGCAAATCCTCAAGAATGTCTTTGTGAAGGTACAAATTGCCACGACCTGTTTGGCCA 1691
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1561 CTACGCAAACCCTCAAGAATGTCTTTGTGAAGGTACAAATTGCCACGACCTATTTGGC-A 1619
Query 1692 TAGAAATTTAACACATTGAAGTCATGTTTTTAGCATATTATATCTCATTGCTTCCGCAAG 1751
|||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 1620 TAGAAATTTAACACATTGAAGTCATGTTTT-AGCATATTAT--CTCATTGCTTCTGCAAG 1676
Query 1752 AGGACGGCATGTCAAACACTTGAACGGGAGCTGCATAGTTCCTTCCCTGAGtttttccat 1811
|||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| |||
Sbjct 1677 GGGACGGCATGCCAAACACTTAAACGGGAGCTGCATAGTTCCTTCCTTGAGTTTTTACAT 1736
Query 1812 ttttgtttgtaatttttttcaattttCCTGCATAGTTGCTGATCTTGATTTATTTAGTTT 1871
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1737 TTTTGTTTGTAATTTTTT-CAATTTTCCTGCATAGTTGCTGATCTTGATTTATTTAATTT 1795
Query 1872 TACGTAAATTAAGATGTAACTAAAAAGAAGATTATGTCTCA-TCTTATAGAATTTCAAAA 1930
|| |||| |||||||||||||||| ||||||||||||||| | ||||| ||||||||||
Sbjct 1796 TATGTAAGTTAAGATGTAACTAAAT-GAAGATTATGTCTCAAT-TTATACAATTTCAAAA 1853
Query 1931 A-GCCTGCTTTTGGCAATAGCCTAACATACAAATTGTGGTCTCTC 1974
| || ||||||||||| |||| ||||||||||||||||||||||
Sbjct 1854 AAGCAAGCTTTTGGCAAGAGCCCAACATACAAATTGTGGTCTCTC 1898
> Ahg896294 jgi|Araly1|896294|Al_scaffold_0005_260
Length=1530
Score = 905 bits (490), Expect = 0.0
Identities = 865/1043 (83%), Gaps = 37/1043 (4%)
Strand=Plus/Plus
Query 631 TTTGAGGATATTTTTGATGTGAGA-CATTTCATTGATTCATTAAGAGATGAAGTTCGGAT 689
|||||||| ||||||||||| | | |||||||||||||| ||||||||||||||| ||||
Sbjct 478 TTTGAGGACATTTTTGATGT-AAAGCATTTCATTGATTCGTTAAGAGATGAAGTTAGGAT 536
Query 690 CTTAAGGAGGCTTCCTAAACGGTTTAGT-AGAAAGTATGGATATCAAA-TGTTCGAAATG 747
| ||||||| ||||| ||||| | |||| || ||||||||||| |||| |||||||||||
Sbjct 537 CATAAGGAGACTTCCAAAACGATATAGTAAG-AAGTATGGATA-CAAATTGTTCGAAATG 594
Query 748 CCTCCTGTGAGCTGGTCTGATGAAAAATATTACTTG-AAGCAGGTATTGCCTCTCTTCAG 806
|| |||||||||||||| | || |||||||||||| || ||||||||||| | |||||
Sbjct 595 CCGCCTGTGAGCTGGTCCAACGACAAATATTACTTGCAA-CAGGTATTGCCGCGATTCAG 653
Query 807 CAAGCATAAAGTTGTACACTTCAATAGGACTGATACCCGCCTGGCAAACAATGGTCTTCC 866
|| | ||||||| |||| ||| ||||| |||||| || |||| ||||| |||||| |
Sbjct 654 TAAACGTAAAGTTATACATTTCCTTAGGAGTGATACGCGATTGGCTAACAACGGTCTTTC 713
Query 867 GC-TCTCTCTCCAGTGGCTCAGGTGCCGGGTGAATTTTCAGGGACTAAAG-TTCACTCCA 924
| | | || || |||| || || || || |||||||| ||| | || ||||||||
Sbjct 714 TCTTGAC-CTTCAAAGGCTGAGATGTCGAGTTAATTTTCAAGGA-TTGAGATTCACTCCG 771
Query 925 CAGCTTGAGGCTTTGGGATCTAAGTTAGTTCGGATTCTACAACAAAGAGGGCCATTTGTG 984
| | |||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||
Sbjct 772 CCGATTGAGGCTTTGGGATCAAAGTTAGTTCGGATTCTTCAACAAAGAGGGTCTTTTGTG 831
Query 985 GCTTTGCATCTGAGATATGAGATGGACATGTTAGCTTTCTCTGGCTGCACTCATGGTTGC 1044
||||||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 832 GCTTTGCATTTAAGATATGAGATGGACATGTTGGCTTTCTCTGGTTGCACACATGGTTGT 891
Query 1045 ACTGAGGAAGAAGCGGAAGAGCT-AAAAAAGATGAGGTACACATATCCCTGGTGGAGAGA 1103
|| ||||||||||| ||||| || |||||| |||||||| ||||||| |||||||||||
Sbjct 892 ACCGAGGAAGAAGCCGAAGAACTCAAAAAA-ATGAGGTATGCATATCCATGGTGGAGAGA 950
Query 1104 GAAGGAGATAGTCTCAGAGGAGAGGAGGGCGCAAGGGCTGTGTCCTTTGACGCCAGAGGA 1163
||| |||||||| ||||| || ||||| | |||||| |||||||| ||||| || |||||
Sbjct 951 GAAAGAGATAGTTTCAGAAGAAAGGAGAGTGCAAGGACTGTGTCCCTTGACACCGGAGGA 1010
Query 1164 GGTGGCCTTGGT-ATTAAAAGCGTTGGGATTTGAGAAA-AATACACAGATATACATTGCA 1221
|| || ||||| || ||||| ||||| ||| | ||| ||||||| ||||||||||||
Sbjct 1011 GGCGGTTTTGGTCCTT-AAAGCATTGGGGTTTCA-AAAGGATACACAAATATACATTGCA 1068
Query 1222 GCTGGTGAGATTTATGGGAGCGAGCATAGAC-T-ATC-CGTGTTAAGGGAAGCATTCCCG 1278
||||||||||||||||| | | ||| ||| | | | | | | |||| || |||| ||
Sbjct 1069 GCTGGTGAGATTTATGGT-G-GTGCAAAGAGATTAGCTCTTCTGAAGG-AATCATTTCC- 1124
Query 1279 A-GAATTGT-AAAGAAGGAAATGCTATTGGAGTC-AGCAGAGCTGCAACAGTTTCAGAAC 1335
| ||||||| ||| |||||||||||||| || || | |||| |||||||||||||||||
Sbjct 1125 ACGAATTGTGAAA-AAGGAAATGCTATTAGA-TCCAACAGAATTGCAACAGTTTCAGAAC 1182
Query 1336 CATTCGTCTCAAATGGCTGCTCTAGATTTCATGGTATCTGTGGCCAGCAACACTTTTATT 1395
||||| || |||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1183 CATTCATCACAAATGGCAGCTCTAGATTTCATAGTATCTGTAGCCAGCAACACTTTTATT 1242
Query 1396 CCTACGTATGATGGAAACATGGCAAAAGTCGTGGAAGGTCATCGTAGATACCTTGGATAT 1455
||||| ||| ||||||||||||||||||| || ||||||||||| ||||| || || | |
Sbjct 1243 CCTACCTATTATGGAAACATGGCAAAAGTTGTTGAAGGTCATCGAAGATATCTCGGGTTT 1302
Query 1456 AAGAAGACAATCCTGCTTGACCGTAAGAGACTCGTGGAGCTACTAGACTTACATCACAAC 1515
||||| |||||| |||| ||||| |||||||| |||||||| | ||||| ||| |||||
Sbjct 1303 AAGAAAACAATCTTGCTAGACCGGAAGAGACTTGTGGAGCTTTTGGACTTGCATTACAAC 1362
Query 1516 AAGACCCTCACGTGGGATCAGTTTGCAGTAGCAGTCAAGGAAGCCCATGAGAG-ACGA-G 1573
|| || ||| | |||||||||||||||||||| ||||||||| | ||| | || |||| |
Sbjct 1363 AAAACGCTCTCTTGGGATCAGTTTGCAGTAGCTGTCAAGGAAACTCATCA-AGGACGACG 1421
Query 1574 CA-GG-AGCACCTACTCATCG-AAGAGTAATCTCTGACAAACCTAAGGAGGAAGATTACT 1630
| || || ||| || ||||| || ||| ||||| || | ||| ||||| ||||||||||
Sbjct 1422 AATGGGAGAACCAACACATCGGAA-AGTTATCTCCGATAGACCGAAGGAAGAAGATTACT 1480
Query 1631 TCTACGCAAATCCTCAAGAATGT 1653
|||| || |||||||||||||||
Sbjct 1481 TCTATGCCAATCCTCAAGAATGT 1503
Score = 255 bits (138), Expect = 7e-67
Identities = 288/355 (81%), Gaps = 31/355 (9%)
Strand=Plus/Plus
Query 274 GCAGTT-CCGAAGCCTCG-TGTACAAGTATGGTTCGTTAGAGTTTGCTCCAGCATTTTGG 331
||| || || ||| |||| | ||||||| |||||| |||||||||| || |||||||||
Sbjct 61 GCAATTCCCAAAG-CTCGAT-TACAAGTTTGGTTCTTTAGAGTTTGTTCTTGCATTTTGG 118
Query 332 TTTGGACGTGTTTGGTTCAGCTTTTCGCCGCCGGTGAGCTTTGGCATTCCCGGATCTTCA 391
||||||| |||||| |||||| | | | |||||||||||| |||||||
Sbjct 119 TTTGGACTTGTTTGATTCAGC---T------C--T----TTTGGCATTCCCAAATCTTCA 163
Query 392 CTGGTTTAACCAATCAGATTTCTAGATTCTCAG-CCCCTGTTGAGCCAGTTCCATTGCCA 450
||||||||||||||||||||||||||||||| |||| ||||| |||||||||| |
Sbjct 164 CTGGTTTAACCAATCAGATTTCTAGATTCTCTCTCCCC-GTTGAATCAGTTCCATT---A 219
Query 451 CCTCCTCTACCTCCTCCGAGGAATTATACAAGCAATGGTATTCTACTTGTATCCTGTAAT 510
|| |||| | |||||| ||||| |||||||| ||||| ||| |||| || || ||||||
Sbjct 220 CCGCCTC--C-TCCTCCAAGGAACTATACAAGTAATGGGATTTTACTAGTGTCTTGTAAT 276
Query 511 GGTGGATTGAATCAAATGCGATCC-GCGATATGTGATATGGTGACTGTTGCTCGGTTATT 569
||||| |||||||||||||| | | ||| | ||||||||||| ||||||||| || ||||
Sbjct 277 GGTGGTTTGAATCAAATGCG-TGCAGCGGTTTGTGATATGGTTACTGTTGCTAGGCTATT 335
Query 570 GAATCTCACTCTCGTTGTTCCAGAGCTTGACAA-AACATCTTTCTGGGCTGATCC 623
|||| | ||||| |||||||| |||||||| || || ||||||||||||||||||
Sbjct 336 GAATTTGACTCTTGTTGTTCCTGAGCTTGATAAGAA-ATCTTTCTGGGCTGATCC 389
> Ahg471564 jgi|Araly1|471564|fgenesh2_kg.1__1518__AT1G14030.1
Length=1663
Score = 84.2 bits (45), Expect = 3e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 1927 AAAAAGCCTGCTTTTGGCAATAGCCTAACATACAAATTGTGGTCTCTC 1974
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1663 AAAAAGCCAGCTTTTGGCAATAGCCTAACATACAAATTGTGGTCTCTC 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5